RNA–Protein interactions for RNA: ENST00000498500.1

THBS3-209, Transcript of thrombospondin 3, humanhuman

TSL 2

Gene THBS3, Length 768 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-209ENST00000498500 NISCHQ9Y2I1 1504 aa30.42■■■□□ 2.46
THBS3-209ENST00000498500 ABCC9O60706 1549 aa27.86■■■□□ 2.05
THBS3-209ENST00000498500 CCDC180Q9P1Z9 1646 aa27.5■■□□□ 1.99
THBS3-209ENST00000498500 DNAJC5BQ9UF47 199 aa26.43■■□□□ 1.82
THBS3-209ENST00000498500 RB1CC1Q8TDY2 1594 aa26.36■■□□□ 1.81
THBS3-209ENST00000498500 NACADO15069 1562 aa26.07■■□□□ 1.76
THBS3-209ENST00000498500 DCAF8L2P0C7V8 631 aa25.95■■□□□ 1.74
THBS3-209ENST00000498500 PABPN1Q86U42 306 aaKnown RBP eCLIP25.88■■□□□ 1.73
THBS3-209ENST00000498500 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
THBS3-209ENST00000498500 BICRAQ9NZM4 1560 aa25.57■■□□□ 1.68
THBS3-209ENST00000498500 MYO15BQ96JP2 1530 aa25.53■■□□□ 1.68
THBS3-209ENST00000498500 CC2D2AQ9P2K1 1620 aa25.15■■□□□ 1.62
THBS3-209ENST00000498500 SHROOM4Q9ULL8 1493 aa25.15■■□□□ 1.62
THBS3-209ENST00000498500 ZCCHC6Q5VYS8 1495 aaKnown RBP25.12■■□□□ 1.61
THBS3-209ENST00000498500 CECR2Q9BXF3 1484 aa25.12■■□□□ 1.61
THBS3-209ENST00000498500 DCAF1Q9Y4B6 1507 aa25.08■■□□□ 1.61
THBS3-209ENST00000498500 SCRIBQ14160 1630 aa25.05■■□□□ 1.6
THBS3-209ENST00000498500 EIF4G1Q04637 1599 aaKnown RBP24.99■■□□□ 1.59
THBS3-209ENST00000498500 DNAJC5Q9H3Z4 198 aa24.55■■□□□ 1.52
THBS3-209ENST00000498500 CUX2O14529 1486 aa24.13■■□□□ 1.45
THBS3-209ENST00000498500 ERCC6Q03468 1493 aa24.1■■□□□ 1.45
THBS3-209ENST00000498500 NCAPD3P42695 1498 aa24.04■■□□□ 1.44
THBS3-209ENST00000498500 ATAD2BQ9ULI0 1458 aa23.93■■□□□ 1.42
THBS3-209ENST00000498500 SMARCA2P51531 1590 aa23.86■■□□□ 1.41
THBS3-209ENST00000498500 HMGXB3Q12766 1538 aa23.84■■□□□ 1.41
THBS3-209ENST00000498500 SMARCA4P51532 1647 aa23.84■■□□□ 1.41
THBS3-209ENST00000498500 NESP48681 1621 aa23.81■■□□□ 1.4
THBS3-209ENST00000498500 BAZ1BQ9UIG0 1483 aaKnown RBP23.71■■□□□ 1.39
THBS3-209ENST00000498500 BAZ1AQ9NRL2 1556 aaPredicted RBP23.65■■□□□ 1.38
THBS3-209ENST00000498500 THOC2Q8NI27 1593 aaKnown RBP23.65■■□□□ 1.38
THBS3-209ENST00000498500 LAMC3Q9Y6N6 1575 aa23.6■■□□□ 1.37
THBS3-209ENST00000498500 PEG3Q9GZU2 1588 aa23.57■■□□□ 1.36
THBS3-209ENST00000498500 KIF21AQ7Z4S6 1674 aa23.55■■□□□ 1.36
THBS3-209ENST00000498500 PDS5BQ9NTI5 1447 aa23.47■■□□□ 1.35
THBS3-209ENST00000498500 MROH2BQ7Z745 1585 aa23.44■■□□□ 1.34
THBS3-209ENST00000498500 TRIM41Q8WV44 630 aa23.39■■□□□ 1.33
THBS3-209ENST00000498500 CADPSQ9ULU8 1353 aa23.3■■□□□ 1.32
THBS3-209ENST00000498500 MRC2Q9UBG0 1479 aa23.28■■□□□ 1.32
THBS3-209ENST00000498500 WDR62O43379 1518 aa23.23■■□□□ 1.31
THBS3-209ENST00000498500 WIZO95785 1651 aa23.19■■□□□ 1.3
THBS3-209ENST00000498500 CEP164Q9UPV0 1460 aa23.13■■□□□ 1.29
THBS3-209ENST00000498500 FANCD2Q9BXW9 1451 aa23.05■■□□□ 1.28
THBS3-209ENST00000498500 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
THBS3-209ENST00000498500 CFTRP13569 1480 aa22.95■■□□□ 1.26
THBS3-209ENST00000498500 URB2Q14146 1524 aaKnown RBP22.88■■□□□ 1.25
THBS3-209ENST00000498500 TOP2AP11388 1531 aaKnown RBP22.83■■□□□ 1.25
THBS3-209ENST00000498500 RSF1Q96T23 1441 aaPredicted RBP22.81■■□□□ 1.24
THBS3-209ENST00000498500 PRDM2Q13029 1718 aa22.79■■□□□ 1.24
THBS3-209ENST00000498500 RIMBP3CA6NJZ7 1639 aa22.75■■□□□ 1.23
THBS3-209ENST00000498500 RIMBP3BA6NNM3 1639 aa22.75■■□□□ 1.23
THBS3-209ENST00000498500 RIMBP3Q9UFD9 1639 aa22.75■■□□□ 1.23
THBS3-209ENST00000498500 ZNF608Q9ULD9 1512 aaPredicted RBP22.67■■□□□ 1.22
THBS3-209ENST00000498500 IFT140Q96RY7 1462 aa22.66■■□□□ 1.22
THBS3-209ENST00000498500 ARHGEF11O15085 1522 aa22.62■■□□□ 1.21
THBS3-209ENST00000498500 TOPBP1Q92547 1522 aa22.58■■□□□ 1.21
THBS3-209ENST00000498500 CCDC88BA6NC98 1476 aa22.58■■□□□ 1.2
THBS3-209ENST00000498500 EIF4G3O43432 1585 aaKnown RBP22.55■■□□□ 1.2
THBS3-209ENST00000498500 ABCC8Q09428 1581 aa22.52■■□□□ 1.2
THBS3-209ENST00000498500 CYB5RLQ6IPT4 315 aa22.51■■□□□ 1.19
THBS3-209ENST00000498500 CHD1O14646 1710 aa22.49■■□□□ 1.19
THBS3-209ENST00000498500 DNMBPQ6XZF7 1577 aa22.47■■□□□ 1.19
THBS3-209ENST00000498500 AQRO60306 1485 aaKnown RBP eCLIP22.42■■□□□ 1.18
THBS3-209ENST00000498500 TRHP20396 242 aaPredicted RBP22.42■■□□□ 1.18
THBS3-209ENST00000498500 FBLN2P98095 1184 aa22.41■■□□□ 1.18
THBS3-209ENST00000498500 TARBP1Q13395 1621 aaKnown RBP22.41■■□□□ 1.18
THBS3-209ENST00000498500 ARAP1Q96P48 1450 aa22.35■■□□□ 1.17
THBS3-209ENST00000498500 POLA1P09884 1462 aaPredicted RBP22.32■■□□□ 1.16
THBS3-209ENST00000498500 RAD54L2Q9Y4B4 1467 aa22.26■■□□□ 1.15
THBS3-209ENST00000498500 TDRD9Q8NDG6 1382 aaKnown RBP22.24■■□□□ 1.15
THBS3-209ENST00000498500 SOGA1O94964 1423 aa22.23■■□□□ 1.15
THBS3-209ENST00000498500 SNAPC4Q5SXM2 1469 aa22.18■■□□□ 1.14
THBS3-209ENST00000498500 CHMP7Q8WUX9 453 aaPredicted RBP22.16■■□□□ 1.14
THBS3-209ENST00000498500 WDR97A6NE52 1622 aa22.15■■□□□ 1.14
THBS3-209ENST00000498500 CLASP1Q7Z460 1538 aa22.15■■□□□ 1.14
THBS3-209ENST00000498500 SYNJ1O43426 1573 aa22.14■■□□□ 1.13
THBS3-209ENST00000498500 FGD5Q6ZNL6 1462 aa22.14■■□□□ 1.13
THBS3-209ENST00000498500 MAGI1Q96QZ7 1491 aaPredicted RBP22.1■■□□□ 1.13
THBS3-209ENST00000498500 GRIN2BQ13224 1484 aa22.07■■□□□ 1.12
THBS3-209ENST00000498500 AEBP2Q6ZN18 517 aaPredicted RBP22.05■■□□□ 1.12
THBS3-209ENST00000498500 CUX1P39880 1505 aa22.05■■□□□ 1.12
THBS3-209ENST00000498500 SYNJ2O15056 1496 aa22.04■■□□□ 1.12
THBS3-209ENST00000498500 PBRM1Q86U86 1689 aa22.01■■□□□ 1.11
THBS3-209ENST00000498500 GAPVD1Q14C86 1478 aa21.96■■□□□ 1.11
THBS3-209ENST00000498500 ABCA5Q8WWZ7 1642 aa21.86■■□□□ 1.09
THBS3-209ENST00000498500 ABCA10Q8WWZ4 1543 aa21.85■■□□□ 1.09
THBS3-209ENST00000498500 ERCC6L2Q5T890 1561 aa21.79■■□□□ 1.08
THBS3-209ENST00000498500 GRIN2AQ12879 1464 aa21.78■■□□□ 1.08
THBS3-209ENST00000498500 CEP170Q5SW79 1584 aa21.74■■□□□ 1.07
THBS3-209ENST00000498500 ADAMTS12P58397 1594 aa21.73■■□□□ 1.07
THBS3-209ENST00000498500 NUP160Q12769 1436 aa21.7■■□□□ 1.06
THBS3-209ENST00000498500 WRNQ14191 1432 aaPredicted RBP eCLIP21.7■■□□□ 1.06
THBS3-209ENST00000498500 SHROOM2Q13796 1616 aa21.67■■□□□ 1.06
THBS3-209ENST00000498500 KIF13AQ9H1H9 1805 aa21.65■■□□□ 1.06
THBS3-209ENST00000498500 FHAD1B1AJZ9 1412 aa21.64■■□□□ 1.06
THBS3-209ENST00000498500 BIVM-ERCC5R4GMW8 1640 aa21.62■■□□□ 1.05
THBS3-209ENST00000498500 SUPT5HO00267 1087 aaKnown RBP21.61■■□□□ 1.05
THBS3-209ENST00000498500 TOP2BQ02880 1626 aa21.61■■□□□ 1.05
THBS3-209ENST00000498500 ERICH3Q5RHP9 1530 aa21.58■■□□□ 1.04
THBS3-209ENST00000498500 PRG4Q92954 1404 aaPredicted RBP21.55■■□□□ 1.04
THBS3-209ENST00000498500 JPH4Q96JJ6 628 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms