RNA–Protein interactions for RNA: ENST00000498443.5

TSPAN1-209, Transcript of tetraspanin 1, humanhuman

TSL 5

Gene TSPAN1, Length 1,071 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN1-209ENST00000498443 NISCHQ9Y2I1 1504 aa23.94■■□□□ 1.42
TSPAN1-209ENST00000498443 ABCC9O60706 1549 aa22.06■■□□□ 1.12
TSPAN1-209ENST00000498443 CCDC180Q9P1Z9 1646 aa21.39■■□□□ 1.01
TSPAN1-209ENST00000498443 DNAJC5BQ9UF47 199 aa21.09■□□□□ 0.97
TSPAN1-209ENST00000498443 RB1CC1Q8TDY2 1594 aa20.66■□□□□ 0.9
TSPAN1-209ENST00000498443 PABPN1Q86U42 306 aaKnown RBP eCLIP20.49■□□□□ 0.87
TSPAN1-209ENST00000498443 DCAF8L2P0C7V8 631 aa20.43■□□□□ 0.86
TSPAN1-209ENST00000498443 NACADO15069 1562 aa20.34■□□□□ 0.85
TSPAN1-209ENST00000498443 UNC13AQ9UPW8 1703 aa20.22■□□□□ 0.83
TSPAN1-209ENST00000498443 BICRAQ9NZM4 1560 aa20.05■□□□□ 0.8
TSPAN1-209ENST00000498443 ZCCHC6Q5VYS8 1495 aaKnown RBP19.92■□□□□ 0.78
TSPAN1-209ENST00000498443 CECR2Q9BXF3 1484 aa19.86■□□□□ 0.77
TSPAN1-209ENST00000498443 CC2D2AQ9P2K1 1620 aa19.84■□□□□ 0.77
TSPAN1-209ENST00000498443 MYO15BQ96JP2 1530 aa19.76■□□□□ 0.75
TSPAN1-209ENST00000498443 DNAJC5Q9H3Z4 198 aa19.69■□□□□ 0.74
TSPAN1-209ENST00000498443 DCAF1Q9Y4B6 1507 aa19.65■□□□□ 0.74
TSPAN1-209ENST00000498443 EIF4G1Q04637 1599 aaKnown RBP19.64■□□□□ 0.73
TSPAN1-209ENST00000498443 SCRIBQ14160 1630 aa19.62■□□□□ 0.73
TSPAN1-209ENST00000498443 SHROOM4Q9ULL8 1493 aa19.6■□□□□ 0.73
TSPAN1-209ENST00000498443 ERCC6Q03468 1493 aa19.09■□□□□ 0.65
TSPAN1-209ENST00000498443 CUX2O14529 1486 aa19.08■□□□□ 0.64
TSPAN1-209ENST00000498443 TRIM41Q8WV44 630 aa18.83■□□□□ 0.6
TSPAN1-209ENST00000498443 NESP48681 1621 aa18.78■□□□□ 0.6
TSPAN1-209ENST00000498443 NCAPD3P42695 1498 aa18.77■□□□□ 0.59
TSPAN1-209ENST00000498443 ATAD2BQ9ULI0 1458 aa18.69■□□□□ 0.58
TSPAN1-209ENST00000498443 SMARCA2P51531 1590 aa18.62■□□□□ 0.57
TSPAN1-209ENST00000498443 THOC2Q8NI27 1593 aaKnown RBP18.62■□□□□ 0.57
TSPAN1-209ENST00000498443 HMGXB3Q12766 1538 aa18.59■□□□□ 0.57
TSPAN1-209ENST00000498443 SMARCA4P51532 1647 aa18.56■□□□□ 0.56
TSPAN1-209ENST00000498443 MROH2BQ7Z745 1585 aa18.55■□□□□ 0.56
TSPAN1-209ENST00000498443 BAZ1BQ9UIG0 1483 aaKnown RBP18.54■□□□□ 0.56
TSPAN1-209ENST00000498443 KIF21AQ7Z4S6 1674 aa18.52■□□□□ 0.56
TSPAN1-209ENST00000498443 BAZ1AQ9NRL2 1556 aaPredicted RBP18.47■□□□□ 0.55
TSPAN1-209ENST00000498443 LAMC3Q9Y6N6 1575 aa18.47■□□□□ 0.55
TSPAN1-209ENST00000498443 PDS5BQ9NTI5 1447 aa18.4■□□□□ 0.54
TSPAN1-209ENST00000498443 WIZO95785 1651 aa18.35■□□□□ 0.53
TSPAN1-209ENST00000498443 RSF1Q96T23 1441 aaPredicted RBP18.34■□□□□ 0.53
TSPAN1-209ENST00000498443 MRC2Q9UBG0 1479 aa18.29■□□□□ 0.52
TSPAN1-209ENST00000498443 PEG3Q9GZU2 1588 aa18.28■□□□□ 0.52
TSPAN1-209ENST00000498443 WDR62O43379 1518 aa18.23■□□□□ 0.51
TSPAN1-209ENST00000498443 CADPSQ9ULU8 1353 aa18.22■□□□□ 0.51
TSPAN1-209ENST00000498443 OSCARQ8IYS5 282 aa18.2■□□□□ 0.5
TSPAN1-209ENST00000498443 CEP164Q9UPV0 1460 aa18.14■□□□□ 0.49
TSPAN1-209ENST00000498443 SUPT5HO00267 1087 aaKnown RBP18.09■□□□□ 0.49
TSPAN1-209ENST00000498443 FANCD2Q9BXW9 1451 aa18.07■□□□□ 0.48
TSPAN1-209ENST00000498443 RIMBP3CA6NJZ7 1639 aa18.04■□□□□ 0.48
TSPAN1-209ENST00000498443 RIMBP3BA6NNM3 1639 aa18.04■□□□□ 0.48
TSPAN1-209ENST00000498443 RIMBP3Q9UFD9 1639 aa18.04■□□□□ 0.48
TSPAN1-209ENST00000498443 TOP2AP11388 1531 aaKnown RBP18.03■□□□□ 0.48
TSPAN1-209ENST00000498443 CCDC88BA6NC98 1476 aa17.94■□□□□ 0.46
TSPAN1-209ENST00000498443 URB2Q14146 1524 aaKnown RBP17.93■□□□□ 0.46
TSPAN1-209ENST00000498443 TRHP20396 242 aaPredicted RBP17.93■□□□□ 0.46
TSPAN1-209ENST00000498443 ARHGEF11O15085 1522 aa17.91■□□□□ 0.46
TSPAN1-209ENST00000498443 CYB5RLQ6IPT4 315 aa17.89■□□□□ 0.45
TSPAN1-209ENST00000498443 CFTRP13569 1480 aa17.88■□□□□ 0.45
TSPAN1-209ENST00000498443 ZNF608Q9ULD9 1512 aaPredicted RBP17.83■□□□□ 0.45
TSPAN1-209ENST00000498443 AEBP2Q6ZN18 517 aaPredicted RBP17.79■□□□□ 0.44
TSPAN1-209ENST00000498443 IFT140Q96RY7 1462 aa17.75■□□□□ 0.43
TSPAN1-209ENST00000498443 FBLN2P98095 1184 aa17.73■□□□□ 0.43
TSPAN1-209ENST00000498443 EIF4G3O43432 1585 aaKnown RBP17.7■□□□□ 0.42
TSPAN1-209ENST00000498443 CHD1O14646 1710 aa17.7■□□□□ 0.42
TSPAN1-209ENST00000498443 PRDM2Q13029 1718 aa17.7■□□□□ 0.42
TSPAN1-209ENST00000498443 ARAP1Q96P48 1450 aa17.69■□□□□ 0.42
TSPAN1-209ENST00000498443 TOPBP1Q92547 1522 aa17.65■□□□□ 0.42
TSPAN1-209ENST00000498443 AQRO60306 1485 aaKnown RBP eCLIP17.63■□□□□ 0.41
TSPAN1-209ENST00000498443 DNMBPQ6XZF7 1577 aa17.53■□□□□ 0.4
TSPAN1-209ENST00000498443 ABCC8Q09428 1581 aa17.51■□□□□ 0.39
TSPAN1-209ENST00000498443 TARBP1Q13395 1621 aaKnown RBP17.5■□□□□ 0.39
TSPAN1-209ENST00000498443 RAD54L2Q9Y4B4 1467 aa17.44■□□□□ 0.38
TSPAN1-209ENST00000498443 TDRD9Q8NDG6 1382 aaKnown RBP17.44■□□□□ 0.38
TSPAN1-209ENST00000498443 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
TSPAN1-209ENST00000498443 SNAPC4Q5SXM2 1469 aa17.43■□□□□ 0.38
TSPAN1-209ENST00000498443 CHMP7Q8WUX9 453 aaPredicted RBP17.42■□□□□ 0.38
TSPAN1-209ENST00000498443 CLASP1Q7Z460 1538 aa17.39■□□□□ 0.37
TSPAN1-209ENST00000498443 SYNJ1O43426 1573 aa17.38■□□□□ 0.37
TSPAN1-209ENST00000498443 SOGA1O94964 1423 aa17.37■□□□□ 0.37
TSPAN1-209ENST00000498443 CUX1P39880 1505 aa17.37■□□□□ 0.37
TSPAN1-209ENST00000498443 GAPVD1Q14C86 1478 aa17.31■□□□□ 0.36
TSPAN1-209ENST00000498443 FGD5Q6ZNL6 1462 aa17.29■□□□□ 0.36
TSPAN1-209ENST00000498443 MAGI1Q96QZ7 1491 aaPredicted RBP17.27■□□□□ 0.36
TSPAN1-209ENST00000498443 SYNJ2O15056 1496 aa17.24■□□□□ 0.35
TSPAN1-209ENST00000498443 GRIN2BQ13224 1484 aa17.24■□□□□ 0.35
TSPAN1-209ENST00000498443 WRNQ14191 1432 aaPredicted RBP eCLIP17.23■□□□□ 0.35
TSPAN1-209ENST00000498443 WDR97A6NE52 1622 aa17.21■□□□□ 0.35
TSPAN1-209ENST00000498443 PBRM1Q86U86 1689 aa17.2■□□□□ 0.34
TSPAN1-209ENST00000498443 ERCC6L2Q5T890 1561 aa17.18■□□□□ 0.34
TSPAN1-209ENST00000498443 TOP2BQ02880 1626 aa17.13■□□□□ 0.33
TSPAN1-209ENST00000498443 BIVM-ERCC5R4GMW8 1640 aa17.11■□□□□ 0.33
TSPAN1-209ENST00000498443 KIF13AQ9H1H9 1805 aa17.06■□□□□ 0.32
TSPAN1-209ENST00000498443 CEP170Q5SW79 1584 aa17.06■□□□□ 0.32
TSPAN1-209ENST00000498443 ABCA10Q8WWZ4 1543 aa17.04■□□□□ 0.32
TSPAN1-209ENST00000498443 GRIN2AQ12879 1464 aa17.04■□□□□ 0.32
TSPAN1-209ENST00000498443 ABCA5Q8WWZ7 1642 aa17.03■□□□□ 0.32
TSPAN1-209ENST00000498443 ILDR1Q86SU0 546 aaPredicted RBP17.01■□□□□ 0.31
TSPAN1-209ENST00000498443 FAM69CQ0P6D2 419 aa16.98■□□□□ 0.31
TSPAN1-209ENST00000498443 ADAMTS12P58397 1594 aa16.97■□□□□ 0.31
TSPAN1-209ENST00000498443 RUSC2Q8N2Y8 1516 aa16.95■□□□□ 0.3
TSPAN1-209ENST00000498443 NUP160Q12769 1436 aa16.95■□□□□ 0.3
TSPAN1-209ENST00000498443 SHROOM2Q13796 1616 aa16.93■□□□□ 0.3
TSPAN1-209ENST00000498443 KDM4FA0A1W2PPD8 638 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms