RNA–Protein interactions for RNA: ENST00000498347.1

FAM3D-205, Transcript of family with sequence similarity 3 member D, humanhuman

TSL 2

Gene FAM3D, Length 449 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3D-205ENST00000498347 NISCHQ9Y2I1 1504 aa23.18■■□□□ 1.3
FAM3D-205ENST00000498347 ABCC9O60706 1549 aa21.9■■□□□ 1.1
FAM3D-205ENST00000498347 DNAJC5BQ9UF47 199 aa21.37■■□□□ 1.01
FAM3D-205ENST00000498347 CCDC180Q9P1Z9 1646 aa21.01■□□□□ 0.95
FAM3D-205ENST00000498347 RB1CC1Q8TDY2 1594 aa20.46■□□□□ 0.87
FAM3D-205ENST00000498347 PABPN1Q86U42 306 aaKnown RBP eCLIP20.38■□□□□ 0.85
FAM3D-205ENST00000498347 DNAJC5Q9H3Z4 198 aa20.24■□□□□ 0.83
FAM3D-205ENST00000498347 NACADO15069 1562 aa20.17■□□□□ 0.82
FAM3D-205ENST00000498347 DCAF8L2P0C7V8 631 aa20.13■□□□□ 0.81
FAM3D-205ENST00000498347 BICRAQ9NZM4 1560 aa19.87■□□□□ 0.77
FAM3D-205ENST00000498347 UNC13AQ9UPW8 1703 aa19.85■□□□□ 0.77
FAM3D-205ENST00000498347 CECR2Q9BXF3 1484 aa19.83■□□□□ 0.76
FAM3D-205ENST00000498347 CC2D2AQ9P2K1 1620 aa19.69■□□□□ 0.74
FAM3D-205ENST00000498347 MYO15BQ96JP2 1530 aa19.64■□□□□ 0.73
FAM3D-205ENST00000498347 SHROOM4Q9ULL8 1493 aa19.54■□□□□ 0.72
FAM3D-205ENST00000498347 EIF4G1Q04637 1599 aaKnown RBP19.44■□□□□ 0.7
FAM3D-205ENST00000498347 CUX2O14529 1486 aa19.19■□□□□ 0.66
FAM3D-205ENST00000498347 SCRIBQ14160 1630 aa19.14■□□□□ 0.66
FAM3D-205ENST00000498347 DCAF1Q9Y4B6 1507 aa19.09■□□□□ 0.65
FAM3D-205ENST00000498347 TRIM41Q8WV44 630 aa18.98■□□□□ 0.63
FAM3D-205ENST00000498347 ERCC6Q03468 1493 aa18.97■□□□□ 0.63
FAM3D-205ENST00000498347 ZCCHC6Q5VYS8 1495 aaKnown RBP18.97■□□□□ 0.63
FAM3D-205ENST00000498347 NCAPD3P42695 1498 aa18.7■□□□□ 0.58
FAM3D-205ENST00000498347 NESP48681 1621 aa18.57■□□□□ 0.56
FAM3D-205ENST00000498347 ATAD2BQ9ULI0 1458 aa18.48■□□□□ 0.55
FAM3D-205ENST00000498347 THOC2Q8NI27 1593 aaKnown RBP18.42■□□□□ 0.54
FAM3D-205ENST00000498347 OSCARQ8IYS5 282 aa18.38■□□□□ 0.53
FAM3D-205ENST00000498347 SMARCA2P51531 1590 aa18.36■□□□□ 0.53
FAM3D-205ENST00000498347 HMGXB3Q12766 1538 aa18.36■□□□□ 0.53
FAM3D-205ENST00000498347 PDS5BQ9NTI5 1447 aa18.33■□□□□ 0.53
FAM3D-205ENST00000498347 LAMC3Q9Y6N6 1575 aa18.3■□□□□ 0.52
FAM3D-205ENST00000498347 BAZ1BQ9UIG0 1483 aaKnown RBP18.24■□□□□ 0.51
FAM3D-205ENST00000498347 KIF21AQ7Z4S6 1674 aa18.18■□□□□ 0.5
FAM3D-205ENST00000498347 SMARCA4P51532 1647 aa18.17■□□□□ 0.5
FAM3D-205ENST00000498347 MRC2Q9UBG0 1479 aa18.13■□□□□ 0.49
FAM3D-205ENST00000498347 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
FAM3D-205ENST00000498347 CADPSQ9ULU8 1353 aa18.12■□□□□ 0.49
FAM3D-205ENST00000498347 AEBP2Q6ZN18 517 aaPredicted RBP18.1■□□□□ 0.49
FAM3D-205ENST00000498347 WDR62O43379 1518 aa18.06■□□□□ 0.48
FAM3D-205ENST00000498347 TRHP20396 242 aaPredicted RBP18.03■□□□□ 0.48
FAM3D-205ENST00000498347 PEG3Q9GZU2 1588 aa18.02■□□□□ 0.48
FAM3D-205ENST00000498347 CYB5RLQ6IPT4 315 aa17.98■□□□□ 0.47
FAM3D-205ENST00000498347 RIMBP3CA6NJZ7 1639 aa17.97■□□□□ 0.47
FAM3D-205ENST00000498347 RIMBP3BA6NNM3 1639 aa17.97■□□□□ 0.47
FAM3D-205ENST00000498347 RIMBP3Q9UFD9 1639 aa17.97■□□□□ 0.47
FAM3D-205ENST00000498347 CEP164Q9UPV0 1460 aa17.9■□□□□ 0.46
FAM3D-205ENST00000498347 ARHGEF11O15085 1522 aa17.86■□□□□ 0.45
FAM3D-205ENST00000498347 MROH2BQ7Z745 1585 aa17.83■□□□□ 0.45
FAM3D-205ENST00000498347 FANCD2Q9BXW9 1451 aa17.83■□□□□ 0.45
FAM3D-205ENST00000498347 URB2Q14146 1524 aaKnown RBP17.7■□□□□ 0.42
FAM3D-205ENST00000498347 CFTRP13569 1480 aa17.69■□□□□ 0.42
FAM3D-205ENST00000498347 ARAP1Q96P48 1450 aa17.63■□□□□ 0.41
FAM3D-205ENST00000498347 ZNF608Q9ULD9 1512 aaPredicted RBP17.62■□□□□ 0.41
FAM3D-205ENST00000498347 IFT140Q96RY7 1462 aa17.61■□□□□ 0.41
FAM3D-205ENST00000498347 FBLN2P98095 1184 aa17.58■□□□□ 0.4
FAM3D-205ENST00000498347 RSF1Q96T23 1441 aaPredicted RBP17.55■□□□□ 0.4
FAM3D-205ENST00000498347 WIZO95785 1651 aa17.54■□□□□ 0.4
FAM3D-205ENST00000498347 AQRO60306 1485 aaKnown RBP eCLIP17.44■□□□□ 0.38
FAM3D-205ENST00000498347 TOPBP1Q92547 1522 aa17.39■□□□□ 0.37
FAM3D-205ENST00000498347 ILDR1Q86SU0 546 aaPredicted RBP17.39■□□□□ 0.37
FAM3D-205ENST00000498347 CHD1O14646 1710 aa17.38■□□□□ 0.37
FAM3D-205ENST00000498347 EIF4G3O43432 1585 aaKnown RBP17.38■□□□□ 0.37
FAM3D-205ENST00000498347 ABCC8Q09428 1581 aa17.38■□□□□ 0.37
FAM3D-205ENST00000498347 CHMP7Q8WUX9 453 aaPredicted RBP17.33■□□□□ 0.36
FAM3D-205ENST00000498347 TOP2AP11388 1531 aaKnown RBP17.26■□□□□ 0.35
FAM3D-205ENST00000498347 TARBP1Q13395 1621 aaKnown RBP17.24■□□□□ 0.35
FAM3D-205ENST00000498347 TDRD9Q8NDG6 1382 aaKnown RBP17.24■□□□□ 0.35
FAM3D-205ENST00000498347 PRDM2Q13029 1718 aa17.23■□□□□ 0.35
FAM3D-205ENST00000498347 CLASP1Q7Z460 1538 aa17.22■□□□□ 0.35
FAM3D-205ENST00000498347 DNMBPQ6XZF7 1577 aa17.22■□□□□ 0.35
FAM3D-205ENST00000498347 GAPVD1Q14C86 1478 aa17.2■□□□□ 0.34
FAM3D-205ENST00000498347 SYNJ1O43426 1573 aa17.19■□□□□ 0.34
FAM3D-205ENST00000498347 SOGA1O94964 1423 aa17.18■□□□□ 0.34
FAM3D-205ENST00000498347 CCDC88BA6NC98 1476 aa17.18■□□□□ 0.34
FAM3D-205ENST00000498347 POLA1P09884 1462 aaPredicted RBP17.16■□□□□ 0.34
FAM3D-205ENST00000498347 SNAPC4Q5SXM2 1469 aa17.15■□□□□ 0.34
FAM3D-205ENST00000498347 RAD54L2Q9Y4B4 1467 aa17.14■□□□□ 0.33
FAM3D-205ENST00000498347 KDM4FA0A1W2PPD8 638 aa17.1■□□□□ 0.33
FAM3D-205ENST00000498347 MAGI1Q96QZ7 1491 aaPredicted RBP17.1■□□□□ 0.33
FAM3D-205ENST00000498347 SYNJ2O15056 1496 aa17.07■□□□□ 0.32
FAM3D-205ENST00000498347 GRIN2BQ13224 1484 aa17.05■□□□□ 0.32
FAM3D-205ENST00000498347 WDR97A6NE52 1622 aa17.01■□□□□ 0.31
FAM3D-205ENST00000498347 FAM69CQ0P6D2 419 aa16.98■□□□□ 0.31
FAM3D-205ENST00000498347 FGD5Q6ZNL6 1462 aa16.93■□□□□ 0.3
FAM3D-205ENST00000498347 NPM1P06748 294 aaKnown RBP eCLIP16.92■□□□□ 0.3
FAM3D-205ENST00000498347 ERCC6L2Q5T890 1561 aa16.91■□□□□ 0.3
FAM3D-205ENST00000498347 KIF13AQ9H1H9 1805 aa16.89■□□□□ 0.29
FAM3D-205ENST00000498347 ABCC10Q5T3U5 1492 aa16.84■□□□□ 0.29
FAM3D-205ENST00000498347 CEP170Q5SW79 1584 aa16.83■□□□□ 0.28
FAM3D-205ENST00000498347 JPH4Q96JJ6 628 aa16.79■□□□□ 0.28
FAM3D-205ENST00000498347 GRIN2AQ12879 1464 aa16.79■□□□□ 0.28
FAM3D-205ENST00000498347 NUP160Q12769 1436 aa16.79■□□□□ 0.28
FAM3D-205ENST00000498347 CUX1P39880 1505 aa16.78■□□□□ 0.28
FAM3D-205ENST00000498347 FBXO41Q8TF61 875 aa16.76■□□□□ 0.27
FAM3D-205ENST00000498347 PBRM1Q86U86 1689 aa16.75■□□□□ 0.27
FAM3D-205ENST00000498347 KDM6BO15054 1643 aa16.75■□□□□ 0.27
FAM3D-205ENST00000498347 PRG4Q92954 1404 aaPredicted RBP16.74■□□□□ 0.27
FAM3D-205ENST00000498347 ABCA10Q8WWZ4 1543 aa16.72■□□□□ 0.27
FAM3D-205ENST00000498347 SHROOM2Q13796 1616 aa16.71■□□□□ 0.27
FAM3D-205ENST00000498347 MAPKBP1O60336 1514 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms