RNA–Protein interactions for RNA: ENST00000498339.1

CDK9-205, Transcript of cyclin dependent kinase 9, humanhuman

TSL 2

Gene CDK9, Length 458 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK9-205ENST00000498339 NISCHQ9Y2I1 1504 aa29.72■■■□□ 2.35
CDK9-205ENST00000498339 ABCC9O60706 1549 aa27.27■■□□□ 1.96
CDK9-205ENST00000498339 CCDC180Q9P1Z9 1646 aa26.93■■□□□ 1.9
CDK9-205ENST00000498339 RB1CC1Q8TDY2 1594 aa25.81■■□□□ 1.72
CDK9-205ENST00000498339 DNAJC5BQ9UF47 199 aa25.77■■□□□ 1.72
CDK9-205ENST00000498339 NACADO15069 1562 aa25.48■■□□□ 1.67
CDK9-205ENST00000498339 DCAF8L2P0C7V8 631 aa25.32■■□□□ 1.64
CDK9-205ENST00000498339 UNC13AQ9UPW8 1703 aa25.31■■□□□ 1.64
CDK9-205ENST00000498339 PABPN1Q86U42 306 aaKnown RBP eCLIP25.28■■□□□ 1.64
CDK9-205ENST00000498339 BICRAQ9NZM4 1560 aa25■■□□□ 1.59
CDK9-205ENST00000498339 MYO15BQ96JP2 1530 aa24.93■■□□□ 1.58
CDK9-205ENST00000498339 CC2D2AQ9P2K1 1620 aa24.63■■□□□ 1.53
CDK9-205ENST00000498339 SHROOM4Q9ULL8 1493 aa24.63■■□□□ 1.53
CDK9-205ENST00000498339 CECR2Q9BXF3 1484 aa24.58■■□□□ 1.53
CDK9-205ENST00000498339 ZCCHC6Q5VYS8 1495 aaKnown RBP24.57■■□□□ 1.52
CDK9-205ENST00000498339 SCRIBQ14160 1630 aa24.56■■□□□ 1.52
CDK9-205ENST00000498339 DCAF1Q9Y4B6 1507 aa24.49■■□□□ 1.51
CDK9-205ENST00000498339 EIF4G1Q04637 1599 aaKnown RBP24.46■■□□□ 1.51
CDK9-205ENST00000498339 DNAJC5Q9H3Z4 198 aa23.97■■□□□ 1.43
CDK9-205ENST00000498339 CUX2O14529 1486 aa23.63■■□□□ 1.37
CDK9-205ENST00000498339 ERCC6Q03468 1493 aa23.62■■□□□ 1.37
CDK9-205ENST00000498339 NCAPD3P42695 1498 aa23.46■■□□□ 1.35
CDK9-205ENST00000498339 ATAD2BQ9ULI0 1458 aa23.37■■□□□ 1.33
CDK9-205ENST00000498339 SMARCA2P51531 1590 aa23.34■■□□□ 1.33
CDK9-205ENST00000498339 HMGXB3Q12766 1538 aa23.33■■□□□ 1.33
CDK9-205ENST00000498339 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
CDK9-205ENST00000498339 NESP48681 1621 aa23.3■■□□□ 1.32
CDK9-205ENST00000498339 BAZ1BQ9UIG0 1483 aaKnown RBP23.2■■□□□ 1.3
CDK9-205ENST00000498339 THOC2Q8NI27 1593 aaKnown RBP23.18■■□□□ 1.3
CDK9-205ENST00000498339 BAZ1AQ9NRL2 1556 aaPredicted RBP23.14■■□□□ 1.3
CDK9-205ENST00000498339 LAMC3Q9Y6N6 1575 aa23.1■■□□□ 1.29
CDK9-205ENST00000498339 KIF21AQ7Z4S6 1674 aa23.09■■□□□ 1.29
CDK9-205ENST00000498339 PEG3Q9GZU2 1588 aa23.04■■□□□ 1.28
CDK9-205ENST00000498339 PDS5BQ9NTI5 1447 aa22.94■■□□□ 1.26
CDK9-205ENST00000498339 MROH2BQ7Z745 1585 aa22.91■■□□□ 1.26
CDK9-205ENST00000498339 TRIM41Q8WV44 630 aa22.9■■□□□ 1.26
CDK9-205ENST00000498339 MRC2Q9UBG0 1479 aa22.79■■□□□ 1.24
CDK9-205ENST00000498339 CADPSQ9ULU8 1353 aa22.75■■□□□ 1.23
CDK9-205ENST00000498339 WDR62O43379 1518 aa22.74■■□□□ 1.23
CDK9-205ENST00000498339 WIZO95785 1651 aa22.69■■□□□ 1.22
CDK9-205ENST00000498339 CEP164Q9UPV0 1460 aa22.65■■□□□ 1.22
CDK9-205ENST00000498339 FANCD2Q9BXW9 1451 aa22.56■■□□□ 1.2
CDK9-205ENST00000498339 OSCARQ8IYS5 282 aa22.45■■□□□ 1.18
CDK9-205ENST00000498339 CFTRP13569 1480 aa22.41■■□□□ 1.18
CDK9-205ENST00000498339 URB2Q14146 1524 aaKnown RBP22.38■■□□□ 1.17
CDK9-205ENST00000498339 PRDM2Q13029 1718 aa22.37■■□□□ 1.17
CDK9-205ENST00000498339 TOP2AP11388 1531 aaKnown RBP22.34■■□□□ 1.17
CDK9-205ENST00000498339 RIMBP3CA6NJZ7 1639 aa22.31■■□□□ 1.16
CDK9-205ENST00000498339 RIMBP3BA6NNM3 1639 aa22.31■■□□□ 1.16
CDK9-205ENST00000498339 RIMBP3Q9UFD9 1639 aa22.31■■□□□ 1.16
CDK9-205ENST00000498339 RSF1Q96T23 1441 aaPredicted RBP22.25■■□□□ 1.15
CDK9-205ENST00000498339 ZNF608Q9ULD9 1512 aaPredicted RBP22.16■■□□□ 1.14
CDK9-205ENST00000498339 IFT140Q96RY7 1462 aa22.16■■□□□ 1.14
CDK9-205ENST00000498339 ARHGEF11O15085 1522 aa22.16■■□□□ 1.14
CDK9-205ENST00000498339 EIF4G3O43432 1585 aaKnown RBP22.12■■□□□ 1.13
CDK9-205ENST00000498339 TOPBP1Q92547 1522 aa22.08■■□□□ 1.13
CDK9-205ENST00000498339 CHD1O14646 1710 aa22.07■■□□□ 1.12
CDK9-205ENST00000498339 CCDC88BA6NC98 1476 aa22.03■■□□□ 1.12
CDK9-205ENST00000498339 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
CDK9-205ENST00000498339 DNMBPQ6XZF7 1577 aa21.99■■□□□ 1.11
CDK9-205ENST00000498339 CYB5RLQ6IPT4 315 aa21.98■■□□□ 1.11
CDK9-205ENST00000498339 TRHP20396 242 aaPredicted RBP21.93■■□□□ 1.1
CDK9-205ENST00000498339 TARBP1Q13395 1621 aaKnown RBP21.92■■□□□ 1.1
CDK9-205ENST00000498339 AQRO60306 1485 aaKnown RBP eCLIP21.9■■□□□ 1.13e-18■■■■■ 46.9
CDK9-205ENST00000498339 FBLN2P98095 1184 aa21.9■■□□□ 1.1
CDK9-205ENST00000498339 ARAP1Q96P48 1450 aa21.9■■□□□ 1.1
CDK9-205ENST00000498339 POLA1P09884 1462 aaPredicted RBP21.82■■□□□ 1.08
CDK9-205ENST00000498339 RAD54L2Q9Y4B4 1467 aa21.76■■□□□ 1.07
CDK9-205ENST00000498339 SNAPC4Q5SXM2 1469 aa21.73■■□□□ 1.07
CDK9-205ENST00000498339 TDRD9Q8NDG6 1382 aaKnown RBP21.71■■□□□ 1.07
CDK9-205ENST00000498339 SYNJ1O43426 1573 aa21.7■■□□□ 1.06
CDK9-205ENST00000498339 SOGA1O94964 1423 aa21.7■■□□□ 1.06
CDK9-205ENST00000498339 CLASP1Q7Z460 1538 aa21.7■■□□□ 1.06
CDK9-205ENST00000498339 WDR97A6NE52 1622 aa21.69■■□□□ 1.06
CDK9-205ENST00000498339 FGD5Q6ZNL6 1462 aa21.66■■□□□ 1.06
CDK9-205ENST00000498339 CHMP7Q8WUX9 453 aaPredicted RBP21.63■■□□□ 1.05
CDK9-205ENST00000498339 MAGI1Q96QZ7 1491 aaPredicted RBP21.63■■□□□ 1.05
CDK9-205ENST00000498339 PBRM1Q86U86 1689 aa21.6■■□□□ 1.05
CDK9-205ENST00000498339 AEBP2Q6ZN18 517 aaPredicted RBP21.6■■□□□ 1.05
CDK9-205ENST00000498339 GRIN2BQ13224 1484 aa21.58■■□□□ 1.04
CDK9-205ENST00000498339 CUX1P39880 1505 aa21.56■■□□□ 1.04
CDK9-205ENST00000498339 SYNJ2O15056 1496 aa21.55■■□□□ 1.04
CDK9-205ENST00000498339 GAPVD1Q14C86 1478 aa21.48■■□□□ 1.03
CDK9-205ENST00000498339 ABCA5Q8WWZ7 1642 aa21.41■■□□□ 1.02
CDK9-205ENST00000498339 ABCA10Q8WWZ4 1543 aa21.35■■□□□ 1.01
CDK9-205ENST00000498339 ERCC6L2Q5T890 1561 aa21.33■■□□□ 1.01
CDK9-205ENST00000498339 GRIN2AQ12879 1464 aa21.31■■□□□ 1
CDK9-205ENST00000498339 ADAMTS12P58397 1594 aa21.3■■□□□ 1
CDK9-205ENST00000498339 CEP170Q5SW79 1584 aa21.28■■□□□ 1
CDK9-205ENST00000498339 KIF13AQ9H1H9 1805 aa21.22■□□□□ 0.99
CDK9-205ENST00000498339 SHROOM2Q13796 1616 aa21.22■□□□□ 0.99
CDK9-205ENST00000498339 NUP160Q12769 1436 aa21.21■□□□□ 0.99
CDK9-205ENST00000498339 WRNQ14191 1432 aaPredicted RBP eCLIP21.2■□□□□ 0.98
CDK9-205ENST00000498339 BIVM-ERCC5R4GMW8 1640 aa21.16■□□□□ 0.98
CDK9-205ENST00000498339 FHAD1B1AJZ9 1412 aa21.15■□□□□ 0.98
CDK9-205ENST00000498339 TOP2BQ02880 1626 aa21.14■□□□□ 0.97
CDK9-205ENST00000498339 ERICH3Q5RHP9 1530 aa21.1■□□□□ 0.97
CDK9-205ENST00000498339 PRG4Q92954 1404 aaPredicted RBP21.07■□□□□ 0.96
CDK9-205ENST00000498339 SUPT5HO00267 1087 aaKnown RBP21.06■□□□□ 0.96
CDK9-205ENST00000498339 RUSC2Q8N2Y8 1516 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms