RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 NISCHQ9Y2I1 1504 aa32.24■■■□□ 2.75
CPNE1-227ENST00000498056 CCDC180Q9P1Z9 1646 aa28.64■■■□□ 2.18
CPNE1-227ENST00000498056 ABCC9O60706 1549 aa27.45■■□□□ 1.98
CPNE1-227ENST00000498056 ZCCHC6Q5VYS8 1495 aaKnown RBP27■■□□□ 1.91
CPNE1-227ENST00000498056 DCAF1Q9Y4B6 1507 aa26.68■■□□□ 1.86
CPNE1-227ENST00000498056 NACADO15069 1562 aa26.67■■□□□ 1.86
CPNE1-227ENST00000498056 DCAF8L2P0C7V8 631 aa26.65■■□□□ 1.86
CPNE1-227ENST00000498056 RB1CC1Q8TDY2 1594 aa26.65■■□□□ 1.86
CPNE1-227ENST00000498056 MYO15BQ96JP2 1530 aa26.6■■□□□ 1.85
CPNE1-227ENST00000498056 UNC13AQ9UPW8 1703 aa26.26■■□□□ 1.79
CPNE1-227ENST00000498056 SCRIBQ14160 1630 aa26.18■■□□□ 1.78
CPNE1-227ENST00000498056 BICRAQ9NZM4 1560 aa25.8■■□□□ 1.72
CPNE1-227ENST00000498056 SHROOM4Q9ULL8 1493 aa25.79■■□□□ 1.72
CPNE1-227ENST00000498056 PABPN1Q86U42 306 aaKnown RBP eCLIP25.6■■□□□ 1.695e-10■□□□□ 8.4
CPNE1-227ENST00000498056 EIF4G1Q04637 1599 aaKnown RBP25.1■■□□□ 1.61
CPNE1-227ENST00000498056 CECR2Q9BXF3 1484 aa25.04■■□□□ 1.6
CPNE1-227ENST00000498056 SMARCA4P51532 1647 aa25.03■■□□□ 1.6
CPNE1-227ENST00000498056 BAZ1AQ9NRL2 1556 aaPredicted RBP25.01■■□□□ 1.59
CPNE1-227ENST00000498056 CC2D2AQ9P2K1 1620 aa24.91■■□□□ 1.58
CPNE1-227ENST00000498056 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
CPNE1-227ENST00000498056 WIZO95785 1651 aa24.74■■□□□ 1.55
CPNE1-227ENST00000498056 SMARCA2P51531 1590 aa24.71■■□□□ 1.55
CPNE1-227ENST00000498056 PEG3Q9GZU2 1588 aa24.71■■□□□ 1.55
CPNE1-227ENST00000498056 RSF1Q96T23 1441 aaPredicted RBP24.68■■□□□ 1.54
CPNE1-227ENST00000498056 ATAD2BQ9ULI0 1458 aa24.64■■□□□ 1.54
CPNE1-227ENST00000498056 HMGXB3Q12766 1538 aa24.57■■□□□ 1.52
CPNE1-227ENST00000498056 DNAJC5BQ9UF47 199 aa24.56■■□□□ 1.52
CPNE1-227ENST00000498056 BAZ1BQ9UIG0 1483 aaKnown RBP24.54■■□□□ 1.52
CPNE1-227ENST00000498056 NCAPD3P42695 1498 aa24.5■■□□□ 1.51
CPNE1-227ENST00000498056 TOP2AP11388 1531 aaKnown RBP24.46■■□□□ 1.51
CPNE1-227ENST00000498056 SUPT5HO00267 1087 aaKnown RBP24.4■■□□□ 1.5
CPNE1-227ENST00000498056 CCDC88BA6NC98 1476 aa24.07■■□□□ 1.44
CPNE1-227ENST00000498056 PRDM2Q13029 1718 aa24.02■■□□□ 1.44
CPNE1-227ENST00000498056 LAMC3Q9Y6N6 1575 aa23.93■■□□□ 1.42
CPNE1-227ENST00000498056 NESP48681 1621 aa23.89■■□□□ 1.42
CPNE1-227ENST00000498056 KIF21AQ7Z4S6 1674 aa23.81■■□□□ 1.4
CPNE1-227ENST00000498056 CFTRP13569 1480 aa23.81■■□□□ 1.4
CPNE1-227ENST00000498056 CADPSQ9ULU8 1353 aa23.8■■□□□ 1.4
CPNE1-227ENST00000498056 ERCC6Q03468 1493 aa23.65■■□□□ 1.38
CPNE1-227ENST00000498056 FANCD2Q9BXW9 1451 aa23.64■■□□□ 1.38
CPNE1-227ENST00000498056 PDS5BQ9NTI5 1447 aa23.64■■□□□ 1.37
CPNE1-227ENST00000498056 CEP164Q9UPV0 1460 aa23.61■■□□□ 1.37
CPNE1-227ENST00000498056 THOC2Q8NI27 1593 aaKnown RBP23.54■■□□□ 1.36
CPNE1-227ENST00000498056 ABCC8Q09428 1581 aa23.47■■□□□ 1.35
CPNE1-227ENST00000498056 MRC2Q9UBG0 1479 aa23.46■■□□□ 1.35
CPNE1-227ENST00000498056 DNMBPQ6XZF7 1577 aa23.4■■□□□ 1.34
CPNE1-227ENST00000498056 WDR62O43379 1518 aa23.38■■□□□ 1.33
CPNE1-227ENST00000498056 URB2Q14146 1524 aaKnown RBP23.38■■□□□ 1.33
CPNE1-227ENST00000498056 BIVM-ERCC5R4GMW8 1640 aa23.35■■□□□ 1.33
CPNE1-227ENST00000498056 SYNJ1O43426 1573 aa23.35■■□□□ 1.33
CPNE1-227ENST00000498056 CUX1P39880 1505 aa23.33■■□□□ 1.33
CPNE1-227ENST00000498056 TOPBP1Q92547 1522 aa23.33■■□□□ 1.32
CPNE1-227ENST00000498056 WRNQ14191 1432 aaPredicted RBP eCLIP23.31■■□□□ 1.32
CPNE1-227ENST00000498056 TOP2BQ02880 1626 aa23.3■■□□□ 1.32
CPNE1-227ENST00000498056 FGD5Q6ZNL6 1462 aa23.19■■□□□ 1.3
CPNE1-227ENST00000498056 CUX2O14529 1486 aa23.17■■□□□ 1.3
CPNE1-227ENST00000498056 POLA1P09884 1462 aaPredicted RBP23.15■■□□□ 1.3
CPNE1-227ENST00000498056 WDR97A6NE52 1622 aa23.13■■□□□ 1.29
CPNE1-227ENST00000498056 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.29
CPNE1-227ENST00000498056 IFT140Q96RY7 1462 aa23.04■■□□□ 1.28
CPNE1-227ENST00000498056 RAD54L2Q9Y4B4 1467 aa23.03■■□□□ 1.28
CPNE1-227ENST00000498056 EIF4G3O43432 1585 aaKnown RBP22.99■■□□□ 1.27
CPNE1-227ENST00000498056 TRIM41Q8WV44 630 aa22.98■■□□□ 1.27
CPNE1-227ENST00000498056 SOGA1O94964 1423 aa22.98■■□□□ 1.27
CPNE1-227ENST00000498056 CHIC1Q5VXU3 224 aa22.97■■□□□ 1.27
CPNE1-227ENST00000498056 PBRM1Q86U86 1689 aa22.96■■□□□ 1.27
CPNE1-227ENST00000498056 ABCA10Q8WWZ4 1543 aa22.94■■□□□ 1.26
CPNE1-227ENST00000498056 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
CPNE1-227ENST00000498056 ZNF608Q9ULD9 1512 aaPredicted RBP22.91■■□□□ 1.26
CPNE1-227ENST00000498056 TDRD9Q8NDG6 1382 aaKnown RBP22.79■■□□□ 1.24
CPNE1-227ENST00000498056 AQRO60306 1485 aaKnown RBP eCLIP22.79■■□□□ 1.247e-10■■■■□ 22
CPNE1-227ENST00000498056 GAPVD1Q14C86 1478 aa22.79■■□□□ 1.24
CPNE1-227ENST00000498056 KIF27Q86VH2 1401 aa22.76■■□□□ 1.23
CPNE1-227ENST00000498056 RUSC2Q8N2Y8 1516 aa22.72■■□□□ 1.23
CPNE1-227ENST00000498056 GRIN2BQ13224 1484 aa22.71■■□□□ 1.23
CPNE1-227ENST00000498056 ERICH3Q5RHP9 1530 aa22.71■■□□□ 1.23
CPNE1-227ENST00000498056 CUL7Q14999 1698 aa22.71■■□□□ 1.23
CPNE1-227ENST00000498056 ADAMTS12P58397 1594 aa22.69■■□□□ 1.22
CPNE1-227ENST00000498056 CHD1O14646 1710 aa22.68■■□□□ 1.22
CPNE1-227ENST00000498056 SNAPC4Q5SXM2 1469 aa22.68■■□□□ 1.22
CPNE1-227ENST00000498056 EEA1Q15075 1411 aa22.64■■□□□ 1.21
CPNE1-227ENST00000498056 MAGI1Q96QZ7 1491 aaPredicted RBP22.63■■□□□ 1.21
CPNE1-227ENST00000498056 FAM9AQ8IZU1 332 aaPredicted RBP22.55■■□□□ 1.2
CPNE1-227ENST00000498056 SYNJ2O15056 1496 aa22.53■■□□□ 1.2
CPNE1-227ENST00000498056 FHAD1B1AJZ9 1412 aa22.51■■□□□ 1.19
CPNE1-227ENST00000498056 IGF1RP08069 1367 aa22.5■■□□□ 1.19
CPNE1-227ENST00000498056 KIF21BO75037 1637 aa22.5■■□□□ 1.19
CPNE1-227ENST00000498056 GRIN2AQ12879 1464 aa22.46■■□□□ 1.19
CPNE1-227ENST00000498056 CTTNBP2Q8WZ74 1663 aa22.46■■□□□ 1.19
CPNE1-227ENST00000498056 CARMIL1Q5VZK9 1371 aa22.44■■□□□ 1.18
CPNE1-227ENST00000498056 RAPGEF2Q9Y4G8 1499 aa22.43■■□□□ 1.18
CPNE1-227ENST00000498056 PRXQ9BXM0 1461 aa22.42■■□□□ 1.18
CPNE1-227ENST00000498056 CSRNP3Q8WYN3 585 aa22.42■■□□□ 1.18
CPNE1-227ENST00000498056 FBLN2P98095 1184 aa22.4■■□□□ 1.18
CPNE1-227ENST00000498056 CEP170Q5SW79 1584 aa22.39■■□□□ 1.18
CPNE1-227ENST00000498056 CHMP7Q8WUX9 453 aaPredicted RBP22.37■■□□□ 1.17
CPNE1-227ENST00000498056 GOLGA3Q08378 1498 aa22.34■■□□□ 1.17
CPNE1-227ENST00000498056 EHMT2Q96KQ7 1210 aa22.29■■□□□ 1.16
CPNE1-227ENST00000498056 NUP160Q12769 1436 aa22.29■■□□□ 1.16
CPNE1-227ENST00000498056 CLASP1Q7Z460 1538 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms