RNA–Protein interactions for RNA: ENST00000497871.1

ATPAF2-209, Transcript of ATP synthase mitochondrial F1 complex assembly factor 2, human

TSL 2

Gene ATPAF2, Length 633 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATPAF2-209	ENST00000497871	NISCH	Q9Y2I1	1504 aa		45.52	■■■■■ 4.88
ATPAF2-209	ENST00000497871	ABCC9	O60706	1549 aa		40.8	■■■■■ 4.12
ATPAF2-209	ENST00000497871	CCDC180	Q9P1Z9	1646 aa		40.73	■■■■■ 4.11
ATPAF2-209	ENST00000497871	RB1CC1	Q8TDY2	1594 aa		38.82	■■■■□ 3.81
ATPAF2-209	ENST00000497871	NACAD	O15069	1562 aa		38.6	■■■■□ 3.77
ATPAF2-209	ENST00000497871	DCAF8L2	P0C7V8	631 aa		38.53	■■■■□ 3.76
ATPAF2-209	ENST00000497871	DNAJC5B	Q9UF47	199 aa		38.34	■■■■□ 3.73
ATPAF2-209	ENST00000497871	MYO15B	Q96JP2	1530 aa		38.12	■■■■□ 3.69
ATPAF2-209	ENST00000497871	PABPN1	Q86U42	306 aa	Known RBP eCLIP	38.08	■■■■□ 3.69
ATPAF2-209	ENST00000497871	UNC13A	Q9UPW8	1703 aa		37.79	■■■■□ 3.64
ATPAF2-209	ENST00000497871	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.71	■■■■□ 3.63
ATPAF2-209	ENST00000497871	BICRA	Q9NZM4	1560 aa		37.67	■■■■□ 3.62
ATPAF2-209	ENST00000497871	DCAF1	Q9Y4B6	1507 aa		37.61	■■■■□ 3.61
ATPAF2-209	ENST00000497871	SHROOM4	Q9ULL8	1493 aa		37.23	■■■■□ 3.55
ATPAF2-209	ENST00000497871	SCRIB	Q14160	1630 aa		37.12	■■■■□ 3.53
ATPAF2-209	ENST00000497871	CC2D2A	Q9P2K1	1620 aa		36.81	■■■■□ 3.48
ATPAF2-209	ENST00000497871	CECR2	Q9BXF3	1484 aa		36.77	■■■■□ 3.48
ATPAF2-209	ENST00000497871	EIF4G1	Q04637	1599 aa	Known RBP	36.76	■■■■□ 3.48
ATPAF2-209	ENST00000497871	NCAPD3	P42695	1498 aa		35.69	■■■■□ 3.3
ATPAF2-209	ENST00000497871	ATAD2B	Q9ULI0	1458 aa		35.55	■■■■□ 3.28
ATPAF2-209	ENST00000497871	SMARCA4	P51532	1647 aa		35.44	■■■■□ 3.26
ATPAF2-209	ENST00000497871	SMARCA2	P51531	1590 aa		35.42	■■■■□ 3.26
ATPAF2-209	ENST00000497871	HMGXB3	Q12766	1538 aa		35.34	■■■■□ 3.25
ATPAF2-209	ENST00000497871	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.32	■■■■□ 3.24
ATPAF2-209	ENST00000497871	ERCC6	Q03468	1493 aa		35.23	■■■■□ 3.23
ATPAF2-209	ENST00000497871	DNAJC5	Q9H3Z4	198 aa		35.22	■■■■□ 3.23
ATPAF2-209	ENST00000497871	BAZ1B	Q9UIG0	1483 aa	Known RBP	35.18	■■■■□ 3.22
ATPAF2-209	ENST00000497871	CUX2	O14529	1486 aa		35.17	■■■■□ 3.22
ATPAF2-209	ENST00000497871	PEG3	Q9GZU2	1588 aa		35.13	■■■■□ 3.21
ATPAF2-209	ENST00000497871	MROH2B	Q7Z745	1585 aa		35.06	■■■■□ 3.2
ATPAF2-209	ENST00000497871	NES	P48681	1621 aa		35.04	■■■■□ 3.2
ATPAF2-209	ENST00000497871	LAMC3	Q9Y6N6	1575 aa		34.8	■■■■□ 3.16
ATPAF2-209	ENST00000497871	PDS5B	Q9NTI5	1447 aa		34.69	■■■■□ 3.14
ATPAF2-209	ENST00000497871	CADPS	Q9ULU8	1353 aa		34.62	■■■■□ 3.13
ATPAF2-209	ENST00000497871	THOC2	Q8NI27	1593 aa	Known RBP	34.61	■■■■□ 3.13
ATPAF2-209	ENST00000497871	WIZ	O95785	1651 aa		34.58	■■■■□ 3.13
ATPAF2-209	ENST00000497871	KIF21A	Q7Z4S6	1674 aa		34.48	■■■■□ 3.11
ATPAF2-209	ENST00000497871	RSF1	Q96T23	1441 aa	Predicted RBP	34.4	■■■■□ 3.1
ATPAF2-209	ENST00000497871	MRC2	Q9UBG0	1479 aa		34.32	■■■■□ 3.08
ATPAF2-209	ENST00000497871	WDR62	O43379	1518 aa		34.21	■■■■□ 3.07
ATPAF2-209	ENST00000497871	CFTR	P13569	1480 aa		34.2	■■■■□ 3.07
ATPAF2-209	ENST00000497871	CEP164	Q9UPV0	1460 aa		34.19	■■■■□ 3.06
ATPAF2-209	ENST00000497871	TOP2A	P11388	1531 aa	Known RBP	34.19	■■■■□ 3.06
ATPAF2-209	ENST00000497871	FANCD2	Q9BXW9	1451 aa		34.17	■■■■□ 3.06
ATPAF2-209	ENST00000497871	URB2	Q14146	1524 aa	Known RBP	33.86	■■■■□ 3.01
ATPAF2-209	ENST00000497871	CCDC88B	A6NC98	1476 aa		33.86	■■■■□ 3.01
ATPAF2-209	ENST00000497871	OSCAR	Q8IYS5	282 aa		33.69	■■■□□ 2.98
ATPAF2-209	ENST00000497871	TRIM41	Q8WV44	630 aa		33.64	■■■□□ 2.98
ATPAF2-209	ENST00000497871	PRDM2	Q13029	1718 aa		33.64	■■■□□ 2.98
ATPAF2-209	ENST00000497871	IFT140	Q96RY7	1462 aa		33.54	■■■□□ 2.96
ATPAF2-209	ENST00000497871	TOPBP1	Q92547	1522 aa		33.51	■■■□□ 2.95
ATPAF2-209	ENST00000497871	ABCC8	Q09428	1581 aa		33.5	■■■□□ 2.95
ATPAF2-209	ENST00000497871	ZNF608	Q9ULD9	1512 aa	Predicted RBP	33.45	■■■□□ 2.95
ATPAF2-209	ENST00000497871	DNMBP	Q6XZF7	1577 aa		33.36	■■■□□ 2.93
ATPAF2-209	ENST00000497871	AQR	O60306	1485 aa	Known RBP eCLIP	33.19	■■■□□ 2.9
ATPAF2-209	ENST00000497871	EIF4G3	O43432	1585 aa	Known RBP	33.18	■■■□□ 2.9
ATPAF2-209	ENST00000497871	POLA1	P09884	1462 aa	Predicted RBP	33.18	■■■□□ 2.9
ATPAF2-209	ENST00000497871	TARBP1	Q13395	1621 aa	Known RBP	33.17	■■■□□ 2.9
ATPAF2-209	ENST00000497871	SOGA1	O94964	1423 aa		33.09	■■■□□ 2.89
ATPAF2-209	ENST00000497871	RAD54L2	Q9Y4B4	1467 aa		33.06	■■■□□ 2.88
ATPAF2-209	ENST00000497871	RIMBP3C	A6NJZ7	1639 aa		33.05	■■■□□ 2.88
ATPAF2-209	ENST00000497871	RIMBP3B	A6NNM3	1639 aa		33.05	■■■□□ 2.88
ATPAF2-209	ENST00000497871	RIMBP3	Q9UFD9	1639 aa		33.05	■■■□□ 2.88
ATPAF2-209	ENST00000497871	TDRD9	Q8NDG6	1382 aa	Known RBP	33.02	■■■□□ 2.88
ATPAF2-209	ENST00000497871	FBLN2	P98095	1184 aa		33.02	■■■□□ 2.88
ATPAF2-209	ENST00000497871	ARHGEF11	O15085	1522 aa		33	■■■□□ 2.87
ATPAF2-209	ENST00000497871	FGD5	Q6ZNL6	1462 aa		32.96	■■■□□ 2.87
ATPAF2-209	ENST00000497871	SUPT5H	O00267	1087 aa	Known RBP	32.95	■■■□□ 2.87
ATPAF2-209	ENST00000497871	CUX1	P39880	1505 aa		32.92	■■■□□ 2.86
ATPAF2-209	ENST00000497871	CHD1	O14646	1710 aa		32.88	■■■□□ 2.85
ATPAF2-209	ENST00000497871	CYB5RL	Q6IPT4	315 aa		32.88	■■■□□ 2.85
ATPAF2-209	ENST00000497871	WDR97	A6NE52	1622 aa		32.85	■■■□□ 2.85
ATPAF2-209	ENST00000497871	CHMP7	Q8WUX9	453 aa	Predicted RBP	32.81	■■■□□ 2.84
ATPAF2-209	ENST00000497871	SNAPC4	Q5SXM2	1469 aa		32.8	■■■□□ 2.84
ATPAF2-209	ENST00000497871	GRIN2B	Q13224	1484 aa		32.76	■■■□□ 2.84
ATPAF2-209	ENST00000497871	MAGI1	Q96QZ7	1491 aa	Predicted RBP	32.74	■■■□□ 2.83
ATPAF2-209	ENST00000497871	ARAP1	Q96P48	1450 aa		32.67	■■■□□ 2.82
ATPAF2-209	ENST00000497871	SYNJ2	O15056	1496 aa		32.65	■■■□□ 2.82
ATPAF2-209	ENST00000497871	GAPVD1	Q14C86	1478 aa		32.65	■■■□□ 2.82
ATPAF2-209	ENST00000497871	ABCA10	Q8WWZ4	1543 aa		32.61	■■■□□ 2.81
ATPAF2-209	ENST00000497871	SYNJ1	O43426	1573 aa		32.6	■■■□□ 2.81
ATPAF2-209	ENST00000497871	CLASP1	Q7Z460	1538 aa		32.6	■■■□□ 2.81
ATPAF2-209	ENST00000497871	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.53	■■■□□ 2.8
ATPAF2-209	ENST00000497871	TRH	P20396	242 aa	Predicted RBP	32.49	■■■□□ 2.79
ATPAF2-209	ENST00000497871	ABCA5	Q8WWZ7	1642 aa		32.48	■■■□□ 2.79
ATPAF2-209	ENST00000497871	PBRM1	Q86U86	1689 aa		32.47	■■■□□ 2.79
ATPAF2-209	ENST00000497871	TOP2B	Q02880	1626 aa		32.4	■■■□□ 2.78
ATPAF2-209	ENST00000497871	BIVM-ERCC5	R4GMW8	1640 aa		32.35	■■■□□ 2.77
ATPAF2-209	ENST00000497871	GRIN2A	Q12879	1464 aa		32.32	■■■□□ 2.76
ATPAF2-209	ENST00000497871	FHAD1	B1AJZ9	1412 aa		32.26	■■■□□ 2.76
ATPAF2-209	ENST00000497871	NUP160	Q12769	1436 aa		32.23	■■■□□ 2.75
ATPAF2-209	ENST00000497871	ADAMTS12	P58397	1594 aa		32.23	■■■□□ 2.75
ATPAF2-209	ENST00000497871	ERICH3	Q5RHP9	1530 aa		32.2	■■■□□ 2.74
ATPAF2-209	ENST00000497871	CEP170	Q5SW79	1584 aa		32.15	■■■□□ 2.74
ATPAF2-209	ENST00000497871	ERCC6L2	Q5T890	1561 aa		32.08	■■■□□ 2.73
ATPAF2-209	ENST00000497871	SHROOM2	Q13796	1616 aa		32	■■■□□ 2.71
ATPAF2-209	ENST00000497871	JPH4	Q96JJ6	628 aa		32	■■■□□ 2.71
ATPAF2-209	ENST00000497871	PRG4	Q92954	1404 aa	Predicted RBP	31.93	■■■□□ 2.7
ATPAF2-209	ENST00000497871	IGF1R	P08069	1367 aa		31.88	■■■□□ 2.69
ATPAF2-209	ENST00000497871	KIF27	Q86VH2	1401 aa		31.85	■■■□□ 2.69

Retrieved 100 of 20,778 RNA–protein pairs in 167.7 ms