RNA–Protein interactions for RNA: ENST00000497869.5

TNFRSF4-203, Transcript of TNF receptor superfamily member 4, humanhuman

TSL 2

Gene TNFRSF4, Length 1,707 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4-203ENST00000497869 NISCHQ9Y2I1 1504 aa56.73■■■■■ 6.67
TNFRSF4-203ENST00000497869 CCDC180Q9P1Z9 1646 aa49.68■■■■■ 5.54
TNFRSF4-203ENST00000497869 ABCC9O60706 1549 aa47.74■■■■■ 5.23
TNFRSF4-203ENST00000497869 ZCCHC6Q5VYS8 1495 aaKnown RBP47.52■■■■■ 5.2
TNFRSF4-203ENST00000497869 DCAF8L2P0C7V8 631 aa47.02■■■■■ 5.12
TNFRSF4-203ENST00000497869 DCAF1Q9Y4B6 1507 aa46.87■■■■■ 5.09
TNFRSF4-203ENST00000497869 MYO15BQ96JP2 1530 aa46.58■■■■■ 5.05
TNFRSF4-203ENST00000497869 NACADO15069 1562 aa46.48■■■■■ 5.03
TNFRSF4-203ENST00000497869 RB1CC1Q8TDY2 1594 aa46.22■■■■■ 4.99
TNFRSF4-203ENST00000497869 SHROOM4Q9ULL8 1493 aa45.79■■■■■ 4.92
TNFRSF4-203ENST00000497869 SCRIBQ14160 1630 aa45.66■■■■■ 4.9
TNFRSF4-203ENST00000497869 UNC13AQ9UPW8 1703 aa45.27■■■■■ 4.84
TNFRSF4-203ENST00000497869 BICRAQ9NZM4 1560 aa44.99■■■■■ 4.79
TNFRSF4-203ENST00000497869 PABPN1Q86U42 306 aaKnown RBP eCLIP44.93■■■■■ 4.78
TNFRSF4-203ENST00000497869 CECR2Q9BXF3 1484 aa44.23■■■■■ 4.67
TNFRSF4-203ENST00000497869 MROH2BQ7Z745 1585 aa43.85■■■■■ 4.61
TNFRSF4-203ENST00000497869 BAZ1AQ9NRL2 1556 aaPredicted RBP43.79■■■■■ 4.6
TNFRSF4-203ENST00000497869 RSF1Q96T23 1441 aaPredicted RBP43.78■■■■■ 4.6
TNFRSF4-203ENST00000497869 SMARCA4P51532 1647 aa43.72■■■■■ 4.59
TNFRSF4-203ENST00000497869 SUPT5HO00267 1087 aaKnown RBP43.66■■■■■ 4.58
TNFRSF4-203ENST00000497869 EIF4G1Q04637 1599 aaKnown RBP43.63■■■■■ 4.58
TNFRSF4-203ENST00000497869 WIZO95785 1651 aa43.38■■■■■ 4.54
TNFRSF4-203ENST00000497869 ATAD2BQ9ULI0 1458 aa43.24■■■■■ 4.51
TNFRSF4-203ENST00000497869 PEG3Q9GZU2 1588 aa43.24■■■■■ 4.51
TNFRSF4-203ENST00000497869 CC2D2AQ9P2K1 1620 aa43.15■■■■■ 4.5
TNFRSF4-203ENST00000497869 SMARCA2P51531 1590 aa43.09■■■■■ 4.49
TNFRSF4-203ENST00000497869 NCAPD3P42695 1498 aa42.98■■■■■ 4.47
TNFRSF4-203ENST00000497869 DNAJC5BQ9UF47 199 aa42.92■■■■■ 4.46
TNFRSF4-203ENST00000497869 TOP2AP11388 1531 aaKnown RBP42.9■■■■■ 4.46
TNFRSF4-203ENST00000497869 BAZ1BQ9UIG0 1483 aaKnown RBP42.88■■■■■ 4.46
TNFRSF4-203ENST00000497869 HMGXB3Q12766 1538 aa42.8■■■■■ 4.44
TNFRSF4-203ENST00000497869 CCDC88BA6NC98 1476 aa42.51■■■■■ 4.4
TNFRSF4-203ENST00000497869 CFTRP13569 1480 aa41.83■■■■■ 4.29
TNFRSF4-203ENST00000497869 CADPSQ9ULU8 1353 aa41.82■■■■■ 4.29
TNFRSF4-203ENST00000497869 NESP48681 1621 aa41.74■■■■■ 4.27
TNFRSF4-203ENST00000497869 LAMC3Q9Y6N6 1575 aa41.54■■■■■ 4.24
TNFRSF4-203ENST00000497869 CHIC1Q5VXU3 224 aa41.48■■■■■ 4.23
TNFRSF4-203ENST00000497869 PRDM2Q13029 1718 aa41.37■■■■■ 4.21
TNFRSF4-203ENST00000497869 ABCC8Q09428 1581 aa41.37■■■■■ 4.21
TNFRSF4-203ENST00000497869 FANCD2Q9BXW9 1451 aa41.34■■■■■ 4.21
TNFRSF4-203ENST00000497869 PDS5BQ9NTI5 1447 aa41.25■■■■■ 4.19
TNFRSF4-203ENST00000497869 WRNQ14191 1432 aaPredicted RBP eCLIP41.16■■■■■ 4.18
TNFRSF4-203ENST00000497869 CEP164Q9UPV0 1460 aa41.11■■■■■ 4.17
TNFRSF4-203ENST00000497869 KIF21AQ7Z4S6 1674 aa41.11■■■■■ 4.17
TNFRSF4-203ENST00000497869 TRIM41Q8WV44 630 aa41.07■■■■■ 4.16
TNFRSF4-203ENST00000497869 SYNJ1O43426 1573 aa41.06■■■■■ 4.16
TNFRSF4-203ENST00000497869 CUX1P39880 1505 aa41.03■■■■■ 4.16
TNFRSF4-203ENST00000497869 URB2Q14146 1524 aaKnown RBP40.92■■■■■ 4.14
TNFRSF4-203ENST00000497869 ERCC6Q03468 1493 aa40.91■■■■■ 4.14
TNFRSF4-203ENST00000497869 TOP2BQ02880 1626 aa40.89■■■■■ 4.14
TNFRSF4-203ENST00000497869 BIVM-ERCC5R4GMW8 1640 aa40.84■■■■■ 4.13
TNFRSF4-203ENST00000497869 TOPBP1Q92547 1522 aa40.82■■■■■ 4.13
TNFRSF4-203ENST00000497869 MRC2Q9UBG0 1479 aa40.81■■■■■ 4.12
TNFRSF4-203ENST00000497869 DNMBPQ6XZF7 1577 aa40.8■■■■■ 4.12
TNFRSF4-203ENST00000497869 THOC2Q8NI27 1593 aaKnown RBP40.68■■■■■ 4.1
TNFRSF4-203ENST00000497869 FGD5Q6ZNL6 1462 aa40.66■■■■■ 4.1
TNFRSF4-203ENST00000497869 WDR62O43379 1518 aa40.63■■■■■ 4.09
TNFRSF4-203ENST00000497869 POLA1P09884 1462 aaPredicted RBP40.59■■■■■ 4.09
TNFRSF4-203ENST00000497869 SOGA1O94964 1423 aa40.49■■■■■ 4.07
TNFRSF4-203ENST00000497869 RAD54L2Q9Y4B4 1467 aa40.48■■■■■ 4.07
TNFRSF4-203ENST00000497869 CUX2O14529 1486 aa40.42■■■■■ 4.06
TNFRSF4-203ENST00000497869 RUSC2Q8N2Y8 1516 aa40.42■■■■■ 4.06
TNFRSF4-203ENST00000497869 FAM9AQ8IZU1 332 aaPredicted RBP40.35■■■■■ 4.05
TNFRSF4-203ENST00000497869 ABCA10Q8WWZ4 1543 aa40.27■■■■■ 4.04
TNFRSF4-203ENST00000497869 TARBP1Q13395 1621 aaKnown RBP40.27■■■■■ 4.04
TNFRSF4-203ENST00000497869 IFT140Q96RY7 1462 aa40.19■■■■■ 4.02
TNFRSF4-203ENST00000497869 WDR97A6NE52 1622 aa40.17■■■■■ 4.02
TNFRSF4-203ENST00000497869 KIF27Q86VH2 1401 aa40.14■■■■■ 4.02
TNFRSF4-203ENST00000497869 TDRD9Q8NDG6 1382 aaKnown RBP40.14■■■■■ 4.02
TNFRSF4-203ENST00000497869 EEA1Q15075 1411 aa40.1■■■■■ 4.01
TNFRSF4-203ENST00000497869 ZNF608Q9ULD9 1512 aaPredicted RBP40.09■■■■■ 4.01
TNFRSF4-203ENST00000497869 CSRNP3Q8WYN3 585 aa40.05■■■■■ 4
TNFRSF4-203ENST00000497869 AQRO60306 1485 aaKnown RBP eCLIP40.01■■■■■ 4
TNFRSF4-203ENST00000497869 ABCA5Q8WWZ7 1642 aa39.99■■■■□ 3.99
TNFRSF4-203ENST00000497869 IGF1RP08069 1367 aa39.98■■■■□ 3.99
TNFRSF4-203ENST00000497869 GAPVD1Q14C86 1478 aa39.94■■■■□ 3.99
TNFRSF4-203ENST00000497869 LOC105371045A0A1W2PR82 267 aa39.89■■■■□ 3.98
TNFRSF4-203ENST00000497869 EIF4G3O43432 1585 aaKnown RBP39.84■■■■□ 3.97
TNFRSF4-203ENST00000497869 EHMT2Q96KQ7 1210 aa39.82■■■■□ 3.96
TNFRSF4-203ENST00000497869 PRXQ9BXM0 1461 aa39.78■■■■□ 3.96
TNFRSF4-203ENST00000497869 ERICH3Q5RHP9 1530 aa39.75■■■■□ 3.95
TNFRSF4-203ENST00000497869 GRIN2BQ13224 1484 aa39.73■■■■□ 3.95
TNFRSF4-203ENST00000497869 CARMIL1Q5VZK9 1371 aa39.7■■■■□ 3.95
TNFRSF4-203ENST00000497869 PBRM1Q86U86 1689 aa39.69■■■■□ 3.94
TNFRSF4-203ENST00000497869 RAPGEF2Q9Y4G8 1499 aa39.68■■■■□ 3.94
TNFRSF4-203ENST00000497869 KIF21BO75037 1637 aa39.66■■■■□ 3.94
TNFRSF4-203ENST00000497869 SNAPC4Q5SXM2 1469 aa39.59■■■■□ 3.93
TNFRSF4-203ENST00000497869 GOLGA3Q08378 1498 aa39.56■■■■□ 3.92
TNFRSF4-203ENST00000497869 CUL7Q14999 1698 aa39.56■■■■□ 3.92
TNFRSF4-203ENST00000497869 ADAMTS12P58397 1594 aa39.52■■■■□ 3.92
TNFRSF4-203ENST00000497869 FHAD1B1AJZ9 1412 aa39.5■■■■□ 3.91
TNFRSF4-203ENST00000497869 MAGI1Q96QZ7 1491 aaPredicted RBP39.47■■■■□ 3.91
TNFRSF4-203ENST00000497869 UBTFP17480 764 aaKnown RBP39.41■■■■□ 3.9
TNFRSF4-203ENST00000497869 SYNJ2O15056 1496 aa39.34■■■■□ 3.89
TNFRSF4-203ENST00000497869 TNIKQ9UKE5 1360 aa39.33■■■■□ 3.89
TNFRSF4-203ENST00000497869 CHMP7Q8WUX9 453 aaPredicted RBP39.26■■■■□ 3.88
TNFRSF4-203ENST00000497869 GRIN2AQ12879 1464 aa39.26■■■■□ 3.88
TNFRSF4-203ENST00000497869 FBLN2P98095 1184 aa39.24■■■■□ 3.87
TNFRSF4-203ENST00000497869 CEP162Q5TB80 1403 aa39.08■■■■□ 3.85
TNFRSF4-203ENST00000497869 CHD1O14646 1710 aa39.07■■■■□ 3.84
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms