RNA–Protein interactions for RNA: ENST00000497755.1

CLIC4-204, Transcript of chloride intracellular channel 4, humanhuman

TSL 3

Gene CLIC4, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-204ENST00000497755 NISCHQ9Y2I1 1504 aa54.98■■■■■ 6.39
CLIC4-204ENST00000497755 ABCC9O60706 1549 aa49.74■■■■■ 5.55
CLIC4-204ENST00000497755 CCDC180Q9P1Z9 1646 aa49.36■■■■■ 5.49
CLIC4-204ENST00000497755 RB1CC1Q8TDY2 1594 aa47.16■■■■■ 5.14
CLIC4-204ENST00000497755 DNAJC5BQ9UF47 199 aa47.04■■■■■ 5.12
CLIC4-204ENST00000497755 NACADO15069 1562 aa46.79■■■■■ 5.08
CLIC4-204ENST00000497755 DCAF8L2P0C7V8 631 aa46.61■■■■■ 5.05
CLIC4-204ENST00000497755 PABPN1Q86U42 306 aaKnown RBP eCLIP46.34■■■■■ 5.01
CLIC4-204ENST00000497755 UNC13AQ9UPW8 1703 aa46.11■■■■■ 4.97
CLIC4-204ENST00000497755 MYO15BQ96JP2 1530 aa46.07■■■■■ 4.97
CLIC4-204ENST00000497755 BICRAQ9NZM4 1560 aa45.85■■■■■ 4.93
CLIC4-204ENST00000497755 ZCCHC6Q5VYS8 1495 aaKnown RBP45.47■■■■■ 4.87
CLIC4-204ENST00000497755 DCAF1Q9Y4B6 1507 aa45.37■■■■■ 4.85
CLIC4-204ENST00000497755 SHROOM4Q9ULL8 1493 aa45.13■■■■■ 4.82
CLIC4-204ENST00000497755 SCRIBQ14160 1630 aa45■■■■■ 4.79
CLIC4-204ENST00000497755 CC2D2AQ9P2K1 1620 aa44.9■■■■■ 4.78
CLIC4-204ENST00000497755 CECR2Q9BXF3 1484 aa44.83■■■■■ 4.77
CLIC4-204ENST00000497755 EIF4G1Q04637 1599 aaKnown RBP44.73■■■■■ 4.75
CLIC4-204ENST00000497755 DNAJC5Q9H3Z4 198 aa43.36■■■■■ 4.53
CLIC4-204ENST00000497755 NCAPD3P42695 1498 aa43.25■■■■■ 4.51
CLIC4-204ENST00000497755 ATAD2BQ9ULI0 1458 aa43.07■■■■■ 4.49
CLIC4-204ENST00000497755 CUX2O14529 1486 aa42.94■■■■■ 4.47
CLIC4-204ENST00000497755 ERCC6Q03468 1493 aa42.92■■■■■ 4.46
CLIC4-204ENST00000497755 SMARCA4P51532 1647 aa42.9■■■■■ 4.46
CLIC4-204ENST00000497755 SMARCA2P51531 1590 aa42.88■■■■■ 4.45
CLIC4-204ENST00000497755 HMGXB3Q12766 1538 aa42.82■■■■■ 4.45
CLIC4-204ENST00000497755 NESP48681 1621 aa42.66■■■■■ 4.42
CLIC4-204ENST00000497755 BAZ1AQ9NRL2 1556 aaPredicted RBP42.65■■■■■ 4.42
CLIC4-204ENST00000497755 BAZ1BQ9UIG0 1483 aaKnown RBP42.6■■■■■ 4.41
CLIC4-204ENST00000497755 PEG3Q9GZU2 1588 aa42.5■■■■■ 4.39
CLIC4-204ENST00000497755 MROH2BQ7Z745 1585 aa42.37■■■■■ 4.37
CLIC4-204ENST00000497755 LAMC3Q9Y6N6 1575 aa42.26■■■■■ 4.36
CLIC4-204ENST00000497755 THOC2Q8NI27 1593 aaKnown RBP42.21■■■■■ 4.35
CLIC4-204ENST00000497755 PDS5BQ9NTI5 1447 aa42.06■■■■■ 4.32
CLIC4-204ENST00000497755 KIF21AQ7Z4S6 1674 aa42.03■■■■■ 4.32
CLIC4-204ENST00000497755 CADPSQ9ULU8 1353 aa41.93■■■■■ 4.3
CLIC4-204ENST00000497755 WIZO95785 1651 aa41.83■■■■■ 4.29
CLIC4-204ENST00000497755 MRC2Q9UBG0 1479 aa41.69■■■■■ 4.26
CLIC4-204ENST00000497755 WDR62O43379 1518 aa41.59■■■■■ 4.25
CLIC4-204ENST00000497755 CEP164Q9UPV0 1460 aa41.46■■■■■ 4.23
CLIC4-204ENST00000497755 FANCD2Q9BXW9 1451 aa41.42■■■■■ 4.22
CLIC4-204ENST00000497755 RSF1Q96T23 1441 aaPredicted RBP41.42■■■■■ 4.22
CLIC4-204ENST00000497755 CFTRP13569 1480 aa41.38■■■■■ 4.21
CLIC4-204ENST00000497755 TRIM41Q8WV44 630 aa41.3■■■■■ 4.2
CLIC4-204ENST00000497755 TOP2AP11388 1531 aaKnown RBP41.24■■■■■ 4.19
CLIC4-204ENST00000497755 URB2Q14146 1524 aaKnown RBP41.11■■■■■ 4.17
CLIC4-204ENST00000497755 OSCARQ8IYS5 282 aa41.04■■■■■ 4.16
CLIC4-204ENST00000497755 CCDC88BA6NC98 1476 aa40.86■■■■■ 4.13
CLIC4-204ENST00000497755 PRDM2Q13029 1718 aa40.83■■■■■ 4.13
CLIC4-204ENST00000497755 ZNF608Q9ULD9 1512 aaPredicted RBP40.67■■■■■ 4.1
CLIC4-204ENST00000497755 IFT140Q96RY7 1462 aa40.66■■■■■ 4.1
CLIC4-204ENST00000497755 TOPBP1Q92547 1522 aa40.61■■■■■ 4.09
CLIC4-204ENST00000497755 ABCC8Q09428 1581 aa40.49■■■■■ 4.07
CLIC4-204ENST00000497755 RIMBP3CA6NJZ7 1639 aa40.44■■■■■ 4.06
CLIC4-204ENST00000497755 RIMBP3BA6NNM3 1639 aa40.44■■■■■ 4.06
CLIC4-204ENST00000497755 RIMBP3Q9UFD9 1639 aa40.44■■■■■ 4.06
CLIC4-204ENST00000497755 DNMBPQ6XZF7 1577 aa40.4■■■■■ 4.06
CLIC4-204ENST00000497755 EIF4G3O43432 1585 aaKnown RBP40.34■■■■■ 4.05
CLIC4-204ENST00000497755 ARHGEF11O15085 1522 aa40.29■■■■■ 4.04
CLIC4-204ENST00000497755 AQRO60306 1485 aaKnown RBP eCLIP40.28■■■■■ 4.04
CLIC4-204ENST00000497755 TARBP1Q13395 1621 aaKnown RBP40.26■■■■■ 4.04
CLIC4-204ENST00000497755 POLA1P09884 1462 aaPredicted RBP40.17■■■■■ 4.02
CLIC4-204ENST00000497755 CYB5RLQ6IPT4 315 aa40.11■■■■■ 4.01
CLIC4-204ENST00000497755 CHD1O14646 1710 aa40.11■■■■■ 4.01
CLIC4-204ENST00000497755 FBLN2P98095 1184 aa40.08■■■■■ 4.01
CLIC4-204ENST00000497755 RAD54L2Q9Y4B4 1467 aa40.07■■■■■ 4
CLIC4-204ENST00000497755 SOGA1O94964 1423 aa40.03■■■■■ 4
CLIC4-204ENST00000497755 TDRD9Q8NDG6 1382 aaKnown RBP40■■■■□ 3.99
CLIC4-204ENST00000497755 ARAP1Q96P48 1450 aa39.88■■■■□ 3.98
CLIC4-204ENST00000497755 FGD5Q6ZNL6 1462 aa39.88■■■■□ 3.97
CLIC4-204ENST00000497755 CUX1P39880 1505 aa39.81■■■■□ 3.96
CLIC4-204ENST00000497755 SNAPC4Q5SXM2 1469 aa39.8■■■■□ 3.96
CLIC4-204ENST00000497755 WDR97A6NE52 1622 aa39.77■■■■□ 3.96
CLIC4-204ENST00000497755 CHMP7Q8WUX9 453 aaPredicted RBP39.74■■■■□ 3.95
CLIC4-204ENST00000497755 TRHP20396 242 aaPredicted RBP39.71■■■■□ 3.95
CLIC4-204ENST00000497755 MAGI1Q96QZ7 1491 aaPredicted RBP39.68■■■■□ 3.94
CLIC4-204ENST00000497755 CLASP1Q7Z460 1538 aa39.67■■■■□ 3.94
CLIC4-204ENST00000497755 GRIN2BQ13224 1484 aa39.67■■■■□ 3.94
CLIC4-204ENST00000497755 SYNJ1O43426 1573 aa39.59■■■■□ 3.93
CLIC4-204ENST00000497755 SYNJ2O15056 1496 aa39.57■■■■□ 3.93
CLIC4-204ENST00000497755 GAPVD1Q14C86 1478 aa39.5■■■■□ 3.91
CLIC4-204ENST00000497755 PBRM1Q86U86 1689 aa39.43■■■■□ 3.9
CLIC4-204ENST00000497755 ABCA10Q8WWZ4 1543 aa39.41■■■■□ 3.9
CLIC4-204ENST00000497755 SUPT5HO00267 1087 aaKnown RBP39.41■■■■□ 3.9
CLIC4-204ENST00000497755 ABCA5Q8WWZ7 1642 aa39.34■■■■□ 3.89
CLIC4-204ENST00000497755 WRNQ14191 1432 aaPredicted RBP eCLIP39.22■■■■□ 3.87
CLIC4-204ENST00000497755 GRIN2AQ12879 1464 aa39.15■■■■□ 3.86
CLIC4-204ENST00000497755 ERCC6L2Q5T890 1561 aa39.07■■■■□ 3.84
CLIC4-204ENST00000497755 TOP2BQ02880 1626 aa39.07■■■■□ 3.84
CLIC4-204ENST00000497755 ADAMTS12P58397 1594 aa39.05■■■■□ 3.84
CLIC4-204ENST00000497755 BIVM-ERCC5R4GMW8 1640 aa39.05■■■■□ 3.84
CLIC4-204ENST00000497755 NUP160Q12769 1436 aa39.05■■■■□ 3.84
CLIC4-204ENST00000497755 CEP170Q5SW79 1584 aa39.02■■■■□ 3.84
CLIC4-204ENST00000497755 FHAD1B1AJZ9 1412 aa38.99■■■■□ 3.83
CLIC4-204ENST00000497755 ERICH3Q5RHP9 1530 aa38.89■■■■□ 3.82
CLIC4-204ENST00000497755 SHROOM2Q13796 1616 aa38.87■■■■□ 3.81
CLIC4-204ENST00000497755 AEBP2Q6ZN18 517 aaPredicted RBP38.74■■■■□ 3.79
CLIC4-204ENST00000497755 JPH4Q96JJ6 628 aa38.73■■■■□ 3.79
CLIC4-204ENST00000497755 PRG4Q92954 1404 aaPredicted RBP38.72■■■■□ 3.79
CLIC4-204ENST00000497755 KIF13AQ9H1H9 1805 aa38.5■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms