RNA–Protein interactions for RNA: ENST00000497564.5

VPS26A-209, Transcript of VPS26, retromer complex component A, humanhuman

TSL 5

Gene VPS26A, Length 462 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-209ENST00000497564 NISCHQ9Y2I1 1504 aa33.31■■■□□ 2.92
VPS26A-209ENST00000497564 CCDC180Q9P1Z9 1646 aa29.63■■■□□ 2.33
VPS26A-209ENST00000497564 ABCC9O60706 1549 aa29.28■■■□□ 2.28
VPS26A-209ENST00000497564 RB1CC1Q8TDY2 1594 aa27.98■■■□□ 2.07
VPS26A-209ENST00000497564 DCAF8L2P0C7V8 631 aa27.93■■■□□ 2.06
VPS26A-209ENST00000497564 NACADO15069 1562 aa27.9■■■□□ 2.06
VPS26A-209ENST00000497564 ZCCHC6Q5VYS8 1495 aaKnown RBP27.71■■■□□ 2.03
VPS26A-209ENST00000497564 MYO15BQ96JP2 1530 aa27.64■■■□□ 2.02
VPS26A-209ENST00000497564 DCAF1Q9Y4B6 1507 aa27.48■■□□□ 1.99
VPS26A-209ENST00000497564 UNC13AQ9UPW8 1703 aa27.42■■□□□ 1.98
VPS26A-209ENST00000497564 PABPN1Q86U42 306 aaKnown RBP eCLIP27.35■■□□□ 1.97
VPS26A-209ENST00000497564 BICRAQ9NZM4 1560 aa27.24■■□□□ 1.95
VPS26A-209ENST00000497564 SCRIBQ14160 1630 aa27.12■■□□□ 1.93
VPS26A-209ENST00000497564 DNAJC5BQ9UF47 199 aa27.11■■□□□ 1.93
VPS26A-209ENST00000497564 SHROOM4Q9ULL8 1493 aa26.77■■□□□ 1.88
VPS26A-209ENST00000497564 EIF4G1Q04637 1599 aaKnown RBP26.49■■□□□ 1.83
VPS26A-209ENST00000497564 CC2D2AQ9P2K1 1620 aa26.44■■□□□ 1.82
VPS26A-209ENST00000497564 CECR2Q9BXF3 1484 aa26.29■■□□□ 1.8
VPS26A-209ENST00000497564 SMARCA4P51532 1647 aa25.88■■□□□ 1.73
VPS26A-209ENST00000497564 ATAD2BQ9ULI0 1458 aa25.79■■□□□ 1.72
VPS26A-209ENST00000497564 BAZ1AQ9NRL2 1556 aaPredicted RBP25.78■■□□□ 1.72
VPS26A-209ENST00000497564 NCAPD3P42695 1498 aa25.78■■□□□ 1.72
VPS26A-209ENST00000497564 MROH2BQ7Z745 1585 aa25.72■■□□□ 1.71
VPS26A-209ENST00000497564 SMARCA2P51531 1590 aa25.69■■□□□ 1.7
VPS26A-209ENST00000497564 HMGXB3Q12766 1538 aa25.62■■□□□ 1.69
VPS26A-209ENST00000497564 PEG3Q9GZU2 1588 aa25.6■■□□□ 1.69
VPS26A-209ENST00000497564 BAZ1BQ9UIG0 1483 aaKnown RBP25.55■■□□□ 1.68
VPS26A-209ENST00000497564 WIZO95785 1651 aa25.42■■□□□ 1.66
VPS26A-209ENST00000497564 RSF1Q96T23 1441 aaPredicted RBP25.38■■□□□ 1.65
VPS26A-209ENST00000497564 NESP48681 1621 aa25.31■■□□□ 1.64
VPS26A-209ENST00000497564 SUPT5HO00267 1087 aaKnown RBP25.24■■□□□ 1.63
VPS26A-209ENST00000497564 ERCC6Q03468 1493 aa25.18■■□□□ 1.62
VPS26A-209ENST00000497564 LAMC3Q9Y6N6 1575 aa25.1■■□□□ 1.61
VPS26A-209ENST00000497564 TOP2AP11388 1531 aaKnown RBP25.09■■□□□ 1.61
VPS26A-209ENST00000497564 CADPSQ9ULU8 1353 aa25.02■■□□□ 1.6
VPS26A-209ENST00000497564 KIF21AQ7Z4S6 1674 aa24.96■■□□□ 1.59
VPS26A-209ENST00000497564 CUX2O14529 1486 aa24.94■■□□□ 1.58
VPS26A-209ENST00000497564 PDS5BQ9NTI5 1447 aa24.93■■□□□ 1.58
VPS26A-209ENST00000497564 THOC2Q8NI27 1593 aaKnown RBP24.91■■□□□ 1.58
VPS26A-209ENST00000497564 CFTRP13569 1480 aa24.84■■□□□ 1.57
VPS26A-209ENST00000497564 CCDC88BA6NC98 1476 aa24.83■■□□□ 1.57
VPS26A-209ENST00000497564 FANCD2Q9BXW9 1451 aa24.75■■□□□ 1.55
VPS26A-209ENST00000497564 MRC2Q9UBG0 1479 aa24.72■■□□□ 1.55
VPS26A-209ENST00000497564 CEP164Q9UPV0 1460 aa24.71■■□□□ 1.55
VPS26A-209ENST00000497564 WDR62O43379 1518 aa24.65■■□□□ 1.54
VPS26A-209ENST00000497564 PRDM2Q13029 1718 aa24.6■■□□□ 1.53
VPS26A-209ENST00000497564 URB2Q14146 1524 aaKnown RBP24.56■■□□□ 1.52
VPS26A-209ENST00000497564 DNAJC5Q9H3Z4 198 aa24.44■■□□□ 1.5
VPS26A-209ENST00000497564 TOPBP1Q92547 1522 aa24.35■■□□□ 1.49
VPS26A-209ENST00000497564 DNMBPQ6XZF7 1577 aa24.28■■□□□ 1.48
VPS26A-209ENST00000497564 ABCC8Q09428 1581 aa24.22■■□□□ 1.47
VPS26A-209ENST00000497564 ZNF608Q9ULD9 1512 aaPredicted RBP24.2■■□□□ 1.46
VPS26A-209ENST00000497564 IFT140Q96RY7 1462 aa24.19■■□□□ 1.46
VPS26A-209ENST00000497564 POLA1P09884 1462 aaPredicted RBP24.13■■□□□ 1.45
VPS26A-209ENST00000497564 CUX1P39880 1505 aa24.13■■□□□ 1.45
VPS26A-209ENST00000497564 CHIC1Q5VXU3 224 aa24.12■■□□□ 1.45
VPS26A-209ENST00000497564 TARBP1Q13395 1621 aaKnown RBP24.1■■□□□ 1.45
VPS26A-209ENST00000497564 RAD54L2Q9Y4B4 1467 aa24.07■■□□□ 1.44
VPS26A-209ENST00000497564 FGD5Q6ZNL6 1462 aa24.05■■□□□ 1.44
VPS26A-209ENST00000497564 EIF4G3O43432 1585 aaKnown RBP24.04■■□□□ 1.44
VPS26A-209ENST00000497564 AQRO60306 1485 aaKnown RBP eCLIP24.02■■□□□ 1.44
VPS26A-209ENST00000497564 SOGA1O94964 1423 aa24.01■■□□□ 1.43
VPS26A-209ENST00000497564 TDRD9Q8NDG6 1382 aaKnown RBP23.94■■□□□ 1.42
VPS26A-209ENST00000497564 WRNQ14191 1432 aaPredicted RBP eCLIP23.9■■□□□ 1.42
VPS26A-209ENST00000497564 BIVM-ERCC5R4GMW8 1640 aa23.89■■□□□ 1.42
VPS26A-209ENST00000497564 OSCARQ8IYS5 282 aa23.89■■□□□ 1.41
VPS26A-209ENST00000497564 SYNJ1O43426 1573 aa23.87■■□□□ 1.41
VPS26A-209ENST00000497564 WDR97A6NE52 1622 aa23.85■■□□□ 1.41
VPS26A-209ENST00000497564 TOP2BQ02880 1626 aa23.85■■□□□ 1.41
VPS26A-209ENST00000497564 TRIM41Q8WV44 630 aa23.84■■□□□ 1.41
VPS26A-209ENST00000497564 CHD1O14646 1710 aa23.78■■□□□ 1.4
VPS26A-209ENST00000497564 ABCA10Q8WWZ4 1543 aa23.78■■□□□ 1.4
VPS26A-209ENST00000497564 SNAPC4Q5SXM2 1469 aa23.77■■□□□ 1.4
VPS26A-209ENST00000497564 FBLN2P98095 1184 aa23.74■■□□□ 1.39
VPS26A-209ENST00000497564 GRIN2BQ13224 1484 aa23.73■■□□□ 1.39
VPS26A-209ENST00000497564 GAPVD1Q14C86 1478 aa23.73■■□□□ 1.39
VPS26A-209ENST00000497564 ABCA5Q8WWZ7 1642 aa23.72■■□□□ 1.39
VPS26A-209ENST00000497564 PBRM1Q86U86 1689 aa23.69■■□□□ 1.38
VPS26A-209ENST00000497564 MAGI1Q96QZ7 1491 aaPredicted RBP23.67■■□□□ 1.38
VPS26A-209ENST00000497564 CHMP7Q8WUX9 453 aaPredicted RBP23.6■■□□□ 1.37
VPS26A-209ENST00000497564 SYNJ2O15056 1496 aa23.6■■□□□ 1.37
VPS26A-209ENST00000497564 RIMBP3CA6NJZ7 1639 aa23.59■■□□□ 1.37
VPS26A-209ENST00000497564 RIMBP3BA6NNM3 1639 aa23.59■■□□□ 1.37
VPS26A-209ENST00000497564 RIMBP3Q9UFD9 1639 aa23.59■■□□□ 1.37
VPS26A-209ENST00000497564 ARHGEF11O15085 1522 aa23.55■■□□□ 1.36
VPS26A-209ENST00000497564 CLASP1Q7Z460 1538 aa23.51■■□□□ 1.35
VPS26A-209ENST00000497564 ADAMTS12P58397 1594 aa23.51■■□□□ 1.35
VPS26A-209ENST00000497564 EEA1Q15075 1411 aa23.49■■□□□ 1.35
VPS26A-209ENST00000497564 ERICH3Q5RHP9 1530 aa23.46■■□□□ 1.35
VPS26A-209ENST00000497564 GRIN2AQ12879 1464 aa23.44■■□□□ 1.34
VPS26A-209ENST00000497564 FHAD1B1AJZ9 1412 aa23.42■■□□□ 1.34
VPS26A-209ENST00000497564 ARAP1Q96P48 1450 aa23.38■■□□□ 1.33
VPS26A-209ENST00000497564 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
VPS26A-209ENST00000497564 CEP170Q5SW79 1584 aa23.37■■□□□ 1.33
VPS26A-209ENST00000497564 CYB5RLQ6IPT4 315 aa23.36■■□□□ 1.33
VPS26A-209ENST00000497564 NUP160Q12769 1436 aa23.35■■□□□ 1.33
VPS26A-209ENST00000497564 KIF27Q86VH2 1401 aa23.34■■□□□ 1.33
VPS26A-209ENST00000497564 IGF1RP08069 1367 aa23.33■■□□□ 1.33
VPS26A-209ENST00000497564 FAM9AQ8IZU1 332 aaPredicted RBP23.27■■□□□ 1.32
VPS26A-209ENST00000497564 ERCC6L2Q5T890 1561 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms