RNA–Protein interactions for RNA: ENST00000497440.5

SHROOM3-210, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 611 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-210ENST00000497440 NISCHQ9Y2I1 1504 aa27.04■■□□□ 1.92
SHROOM3-210ENST00000497440 CCDC180Q9P1Z9 1646 aa24.06■■□□□ 1.44
SHROOM3-210ENST00000497440 ABCC9O60706 1549 aa23.63■■□□□ 1.37
SHROOM3-210ENST00000497440 NACADO15069 1562 aa22.7■■□□□ 1.22
SHROOM3-210ENST00000497440 RB1CC1Q8TDY2 1594 aa22.7■■□□□ 1.22
SHROOM3-210ENST00000497440 MYO15BQ96JP2 1530 aa22.64■■□□□ 1.21
SHROOM3-210ENST00000497440 ZCCHC6Q5VYS8 1495 aaKnown RBP22.48■■□□□ 1.19
SHROOM3-210ENST00000497440 DCAF1Q9Y4B6 1507 aa22.45■■□□□ 1.18
SHROOM3-210ENST00000497440 DCAF8L2P0C7V8 631 aa22.43■■□□□ 1.18
SHROOM3-210ENST00000497440 UNC13AQ9UPW8 1703 aa22.18■■□□□ 1.14
SHROOM3-210ENST00000497440 BICRAQ9NZM4 1560 aa22.12■■□□□ 1.13
SHROOM3-210ENST00000497440 PABPN1Q86U42 306 aaKnown RBP eCLIP22.07■■□□□ 1.12
SHROOM3-210ENST00000497440 DNAJC5BQ9UF47 199 aa22.01■■□□□ 1.11
SHROOM3-210ENST00000497440 SHROOM4Q9ULL8 1493 aa21.9■■□□□ 1.1
SHROOM3-210ENST00000497440 SCRIBQ14160 1630 aa21.81■■□□□ 1.08
SHROOM3-210ENST00000497440 EIF4G1Q04637 1599 aaKnown RBP21.48■■□□□ 1.03
SHROOM3-210ENST00000497440 CC2D2AQ9P2K1 1620 aa21.41■■□□□ 1.02
SHROOM3-210ENST00000497440 CECR2Q9BXF3 1484 aa21.29■■□□□ 1
SHROOM3-210ENST00000497440 NCAPD3P42695 1498 aa21.02■□□□□ 0.96
SHROOM3-210ENST00000497440 SMARCA4P51532 1647 aa20.96■□□□□ 0.95
SHROOM3-210ENST00000497440 ATAD2BQ9ULI0 1458 aa20.95■□□□□ 0.94
SHROOM3-210ENST00000497440 BAZ1AQ9NRL2 1556 aaPredicted RBP20.92■□□□□ 0.94
SHROOM3-210ENST00000497440 PEG3Q9GZU2 1588 aa20.87■□□□□ 0.93
SHROOM3-210ENST00000497440 SMARCA2P51531 1590 aa20.86■□□□□ 0.93
SHROOM3-210ENST00000497440 HMGXB3Q12766 1538 aa20.83■□□□□ 0.92
SHROOM3-210ENST00000497440 MROH2BQ7Z745 1585 aa20.8■□□□□ 0.92
SHROOM3-210ENST00000497440 BAZ1BQ9UIG0 1483 aaKnown RBP20.67■□□□□ 0.9
SHROOM3-210ENST00000497440 RSF1Q96T23 1441 aaPredicted RBP20.54■□□□□ 0.88
SHROOM3-210ENST00000497440 WIZO95785 1651 aa20.51■□□□□ 0.87
SHROOM3-210ENST00000497440 NESP48681 1621 aa20.43■□□□□ 0.86
SHROOM3-210ENST00000497440 LAMC3Q9Y6N6 1575 aa20.39■□□□□ 0.85
SHROOM3-210ENST00000497440 CADPSQ9ULU8 1353 aa20.34■□□□□ 0.85
SHROOM3-210ENST00000497440 TOP2AP11388 1531 aaKnown RBP20.32■□□□□ 0.84
SHROOM3-210ENST00000497440 ERCC6Q03468 1493 aa20.31■□□□□ 0.84
SHROOM3-210ENST00000497440 CUX2O14529 1486 aa20.3■□□□□ 0.84
SHROOM3-210ENST00000497440 PDS5BQ9NTI5 1447 aa20.26■□□□□ 0.83
SHROOM3-210ENST00000497440 CFTRP13569 1480 aa20.21■□□□□ 0.83
SHROOM3-210ENST00000497440 THOC2Q8NI27 1593 aaKnown RBP20.18■□□□□ 0.82
SHROOM3-210ENST00000497440 KIF21AQ7Z4S6 1674 aa20.13■□□□□ 0.81
SHROOM3-210ENST00000497440 CCDC88BA6NC98 1476 aa20.11■□□□□ 0.81
SHROOM3-210ENST00000497440 FANCD2Q9BXW9 1451 aa20.05■□□□□ 0.8
SHROOM3-210ENST00000497440 MRC2Q9UBG0 1479 aa20.04■□□□□ 0.8
SHROOM3-210ENST00000497440 WDR62O43379 1518 aa20.02■□□□□ 0.79
SHROOM3-210ENST00000497440 CEP164Q9UPV0 1460 aa20■□□□□ 0.79
SHROOM3-210ENST00000497440 DNAJC5Q9H3Z4 198 aa19.94■□□□□ 0.78
SHROOM3-210ENST00000497440 PRDM2Q13029 1718 aa19.9■□□□□ 0.78
SHROOM3-210ENST00000497440 URB2Q14146 1524 aaKnown RBP19.88■□□□□ 0.77
SHROOM3-210ENST00000497440 ABCC8Q09428 1581 aa19.74■□□□□ 0.75
SHROOM3-210ENST00000497440 TOPBP1Q92547 1522 aa19.72■□□□□ 0.75
SHROOM3-210ENST00000497440 SUPT5HO00267 1087 aaKnown RBP19.7■□□□□ 0.74
SHROOM3-210ENST00000497440 DNMBPQ6XZF7 1577 aa19.66■□□□□ 0.74
SHROOM3-210ENST00000497440 IFT140Q96RY7 1462 aa19.64■□□□□ 0.73
SHROOM3-210ENST00000497440 ZNF608Q9ULD9 1512 aaPredicted RBP19.56■□□□□ 0.72
SHROOM3-210ENST00000497440 POLA1P09884 1462 aaPredicted RBP19.55■□□□□ 0.72
SHROOM3-210ENST00000497440 TARBP1Q13395 1621 aaKnown RBP19.55■□□□□ 0.72
SHROOM3-210ENST00000497440 CUX1P39880 1505 aa19.51■□□□□ 0.71
SHROOM3-210ENST00000497440 SOGA1O94964 1423 aa19.45■□□□□ 0.7
SHROOM3-210ENST00000497440 FGD5Q6ZNL6 1462 aa19.44■□□□□ 0.7
SHROOM3-210ENST00000497440 RAD54L2Q9Y4B4 1467 aa19.43■□□□□ 0.7
SHROOM3-210ENST00000497440 AQRO60306 1485 aaKnown RBP eCLIP19.42■□□□□ 0.7
SHROOM3-210ENST00000497440 OSCARQ8IYS5 282 aa19.42■□□□□ 0.7
SHROOM3-210ENST00000497440 EIF4G3O43432 1585 aaKnown RBP19.41■□□□□ 0.7
SHROOM3-210ENST00000497440 WDR97A6NE52 1622 aa19.4■□□□□ 0.7
SHROOM3-210ENST00000497440 TDRD9Q8NDG6 1382 aaKnown RBP19.34■□□□□ 0.69
SHROOM3-210ENST00000497440 ABCA10Q8WWZ4 1543 aa19.31■□□□□ 0.68
SHROOM3-210ENST00000497440 WRNQ14191 1432 aaPredicted RBP eCLIP19.31■□□□□ 0.68
SHROOM3-210ENST00000497440 TOP2BQ02880 1626 aa19.3■□□□□ 0.68
SHROOM3-210ENST00000497440 BIVM-ERCC5R4GMW8 1640 aa19.29■□□□□ 0.68
SHROOM3-210ENST00000497440 SYNJ1O43426 1573 aa19.25■□□□□ 0.67
SHROOM3-210ENST00000497440 GRIN2BQ13224 1484 aa19.24■□□□□ 0.67
SHROOM3-210ENST00000497440 MAGI1Q96QZ7 1491 aaPredicted RBP19.22■□□□□ 0.67
SHROOM3-210ENST00000497440 GAPVD1Q14C86 1478 aa19.22■□□□□ 0.67
SHROOM3-210ENST00000497440 ABCA5Q8WWZ7 1642 aa19.22■□□□□ 0.67
SHROOM3-210ENST00000497440 SNAPC4Q5SXM2 1469 aa19.19■□□□□ 0.66
SHROOM3-210ENST00000497440 CHD1O14646 1710 aa19.17■□□□□ 0.66
SHROOM3-210ENST00000497440 SYNJ2O15056 1496 aa19.15■□□□□ 0.66
SHROOM3-210ENST00000497440 PBRM1Q86U86 1689 aa19.11■□□□□ 0.65
SHROOM3-210ENST00000497440 CHMP7Q8WUX9 453 aaPredicted RBP19.1■□□□□ 0.65
SHROOM3-210ENST00000497440 FBLN2P98095 1184 aa19.09■□□□□ 0.65
SHROOM3-210ENST00000497440 ARHGEF11O15085 1522 aa19.09■□□□□ 0.65
SHROOM3-210ENST00000497440 CLASP1Q7Z460 1538 aa19.08■□□□□ 0.64
SHROOM3-210ENST00000497440 RIMBP3CA6NJZ7 1639 aa19.07■□□□□ 0.64
SHROOM3-210ENST00000497440 RIMBP3BA6NNM3 1639 aa19.07■□□□□ 0.64
SHROOM3-210ENST00000497440 RIMBP3Q9UFD9 1639 aa19.07■□□□□ 0.64
SHROOM3-210ENST00000497440 ERICH3Q5RHP9 1530 aa19.05■□□□□ 0.64
SHROOM3-210ENST00000497440 FHAD1B1AJZ9 1412 aa19.01■□□□□ 0.63
SHROOM3-210ENST00000497440 GRIN2AQ12879 1464 aa19■□□□□ 0.63
SHROOM3-210ENST00000497440 ADAMTS12P58397 1594 aa19■□□□□ 0.63
SHROOM3-210ENST00000497440 NUP160Q12769 1436 aa18.99■□□□□ 0.63
SHROOM3-210ENST00000497440 TRIM41Q8WV44 630 aa18.98■□□□□ 0.63
SHROOM3-210ENST00000497440 IGF1RP08069 1367 aa18.95■□□□□ 0.62
SHROOM3-210ENST00000497440 ARAP1Q96P48 1450 aa18.93■□□□□ 0.62
SHROOM3-210ENST00000497440 KIF27Q86VH2 1401 aa18.91■□□□□ 0.62
SHROOM3-210ENST00000497440 CEP170Q5SW79 1584 aa18.89■□□□□ 0.62
SHROOM3-210ENST00000497440 CYB5RLQ6IPT4 315 aa18.89■□□□□ 0.61
SHROOM3-210ENST00000497440 SHROOM2Q13796 1616 aa18.84■□□□□ 0.61
SHROOM3-210ENST00000497440 CUL7Q14999 1698 aa18.79■□□□□ 0.6
SHROOM3-210ENST00000497440 CARMIL1Q5VZK9 1371 aa18.77■□□□□ 0.6
SHROOM3-210ENST00000497440 ERCC6L2Q5T890 1561 aa18.76■□□□□ 0.59
SHROOM3-210ENST00000497440 JPH4Q96JJ6 628 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms