RNA–Protein interactions for RNA: ENST00000497415.1

RPN1-208, Transcript of ribophorin I, humanhuman

TSL 4

Gene RPN1, Length 547 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPN1-208ENST00000497415 NISCHQ9Y2I1 1504 aa45.9■■■■■ 4.94
RPN1-208ENST00000497415 CCDC180Q9P1Z9 1646 aa40.93■■■■■ 4.14
RPN1-208ENST00000497415 ABCC9O60706 1549 aa40.21■■■■■ 4.03
RPN1-208ENST00000497415 RB1CC1Q8TDY2 1594 aa38.61■■■■□ 3.77
RPN1-208ENST00000497415 NACADO15069 1562 aa38.53■■■■□ 3.76
RPN1-208ENST00000497415 DCAF8L2P0C7V8 631 aa38.36■■■■□ 3.73
RPN1-208ENST00000497415 MYO15BQ96JP2 1530 aa38.27■■■■□ 3.72
RPN1-208ENST00000497415 ZCCHC6Q5VYS8 1495 aaKnown RBP38.18■■■■□ 3.7
RPN1-208ENST00000497415 DCAF1Q9Y4B6 1507 aa38■■■■□ 3.67
RPN1-208ENST00000497415 UNC13AQ9UPW8 1703 aa37.77■■■■□ 3.64
RPN1-208ENST00000497415 PABPN1Q86U42 306 aaKnown RBP eCLIP37.53■■■■□ 3.6
RPN1-208ENST00000497415 BICRAQ9NZM4 1560 aa37.48■■■■□ 3.59
RPN1-208ENST00000497415 SCRIBQ14160 1630 aa37.26■■■■□ 3.56
RPN1-208ENST00000497415 DNAJC5BQ9UF47 199 aa37.17■■■■□ 3.54
RPN1-208ENST00000497415 SHROOM4Q9ULL8 1493 aa37.07■■■■□ 3.52
RPN1-208ENST00000497415 EIF4G1Q04637 1599 aaKnown RBP36.49■■■■□ 3.43
RPN1-208ENST00000497415 CC2D2AQ9P2K1 1620 aa36.39■■■■□ 3.42
RPN1-208ENST00000497415 CECR2Q9BXF3 1484 aa36.17■■■■□ 3.38
RPN1-208ENST00000497415 SMARCA4P51532 1647 aa35.66■■■■□ 3.3
RPN1-208ENST00000497415 BAZ1AQ9NRL2 1556 aaPredicted RBP35.58■■■■□ 3.29
RPN1-208ENST00000497415 NCAPD3P42695 1498 aa35.57■■■■□ 3.28
RPN1-208ENST00000497415 ATAD2BQ9ULI0 1458 aa35.53■■■■□ 3.28
RPN1-208ENST00000497415 SMARCA2P51531 1590 aa35.47■■■■□ 3.27
RPN1-208ENST00000497415 MROH2BQ7Z745 1585 aa35.36■■■■□ 3.25
RPN1-208ENST00000497415 HMGXB3Q12766 1538 aa35.36■■■■□ 3.25
RPN1-208ENST00000497415 PEG3Q9GZU2 1588 aa35.35■■■■□ 3.25
RPN1-208ENST00000497415 BAZ1BQ9UIG0 1483 aaKnown RBP35.2■■■■□ 3.23
RPN1-208ENST00000497415 WIZO95785 1651 aa34.97■■■■□ 3.19
RPN1-208ENST00000497415 RSF1Q96T23 1441 aaPredicted RBP34.88■■■■□ 3.17
RPN1-208ENST00000497415 NESP48681 1621 aa34.74■■■■□ 3.15
RPN1-208ENST00000497415 ERCC6Q03468 1493 aa34.65■■■■□ 3.14
RPN1-208ENST00000497415 LAMC3Q9Y6N6 1575 aa34.65■■■■□ 3.14
RPN1-208ENST00000497415 TOP2AP11388 1531 aaKnown RBP34.58■■■■□ 3.13
RPN1-208ENST00000497415 CADPSQ9ULU8 1353 aa34.49■■■■□ 3.11
RPN1-208ENST00000497415 CUX2O14529 1486 aa34.43■■■■□ 3.1
RPN1-208ENST00000497415 PDS5BQ9NTI5 1447 aa34.4■■■■□ 3.1
RPN1-208ENST00000497415 KIF21AQ7Z4S6 1674 aa34.35■■■■□ 3.09
RPN1-208ENST00000497415 THOC2Q8NI27 1593 aaKnown RBP34.29■■■■□ 3.08
RPN1-208ENST00000497415 CFTRP13569 1480 aa34.26■■■■□ 3.07
RPN1-208ENST00000497415 CCDC88BA6NC98 1476 aa34.19■■■■□ 3.06
RPN1-208ENST00000497415 FANCD2Q9BXW9 1451 aa34.08■■■■□ 3.05
RPN1-208ENST00000497415 MRC2Q9UBG0 1479 aa34.07■■■■□ 3.04
RPN1-208ENST00000497415 CEP164Q9UPV0 1460 aa34.05■■■■□ 3.04
RPN1-208ENST00000497415 PRDM2Q13029 1718 aa33.99■■■■□ 3.03
RPN1-208ENST00000497415 WDR62O43379 1518 aa33.98■■■■□ 3.03
RPN1-208ENST00000497415 URB2Q14146 1524 aaKnown RBP33.77■■■■□ 3
RPN1-208ENST00000497415 SUPT5HO00267 1087 aaKnown RBP33.75■■■□□ 2.99
RPN1-208ENST00000497415 DNAJC5Q9H3Z4 198 aa33.66■■■□□ 2.98
RPN1-208ENST00000497415 TOPBP1Q92547 1522 aa33.53■■■□□ 2.96
RPN1-208ENST00000497415 ABCC8Q09428 1581 aa33.52■■■□□ 2.96
RPN1-208ENST00000497415 DNMBPQ6XZF7 1577 aa33.47■■■□□ 2.95
RPN1-208ENST00000497415 IFT140Q96RY7 1462 aa33.37■■■□□ 2.93
RPN1-208ENST00000497415 ZNF608Q9ULD9 1512 aaPredicted RBP33.23■■■□□ 2.91
RPN1-208ENST00000497415 POLA1P09884 1462 aaPredicted RBP33.22■■■□□ 2.91
RPN1-208ENST00000497415 TARBP1Q13395 1621 aaKnown RBP33.2■■■□□ 2.9
RPN1-208ENST00000497415 CUX1P39880 1505 aa33.18■■■□□ 2.9
RPN1-208ENST00000497415 FGD5Q6ZNL6 1462 aa33.1■■■□□ 2.89
RPN1-208ENST00000497415 EIF4G3O43432 1585 aaKnown RBP33.09■■■□□ 2.89
RPN1-208ENST00000497415 SOGA1O94964 1423 aa33.08■■■□□ 2.89
RPN1-208ENST00000497415 RAD54L2Q9Y4B4 1467 aa33.07■■■□□ 2.88
RPN1-208ENST00000497415 AQRO60306 1485 aaKnown RBP eCLIP33.01■■■□□ 2.887e-7■■■□□ 17.9
RPN1-208ENST00000497415 OSCARQ8IYS5 282 aa32.95■■■□□ 2.87
RPN1-208ENST00000497415 WDR97A6NE52 1622 aa32.93■■■□□ 2.86
RPN1-208ENST00000497415 TDRD9Q8NDG6 1382 aaKnown RBP32.91■■■□□ 2.86
RPN1-208ENST00000497415 WRNQ14191 1432 aaPredicted RBP eCLIP32.87■■■□□ 2.85
RPN1-208ENST00000497415 BIVM-ERCC5R4GMW8 1640 aa32.86■■■□□ 2.85
RPN1-208ENST00000497415 TOP2BQ02880 1626 aa32.85■■■□□ 2.85
RPN1-208ENST00000497415 SYNJ1O43426 1573 aa32.81■■■□□ 2.84
RPN1-208ENST00000497415 ABCA10Q8WWZ4 1543 aa32.79■■■□□ 2.84
RPN1-208ENST00000497415 CHD1O14646 1710 aa32.73■■■□□ 2.83
RPN1-208ENST00000497415 GRIN2BQ13224 1484 aa32.72■■■□□ 2.83
RPN1-208ENST00000497415 GAPVD1Q14C86 1478 aa32.69■■■□□ 2.82
RPN1-208ENST00000497415 SNAPC4Q5SXM2 1469 aa32.69■■■□□ 2.82
RPN1-208ENST00000497415 ABCA5Q8WWZ7 1642 aa32.68■■■□□ 2.82
RPN1-208ENST00000497415 MAGI1Q96QZ7 1491 aaPredicted RBP32.67■■■□□ 2.82
RPN1-208ENST00000497415 PBRM1Q86U86 1689 aa32.64■■■□□ 2.82
RPN1-208ENST00000497415 FBLN2P98095 1184 aa32.61■■■□□ 2.81
RPN1-208ENST00000497415 SYNJ2O15056 1496 aa32.54■■■□□ 2.8
RPN1-208ENST00000497415 CHMP7Q8WUX9 453 aaPredicted RBP32.52■■■□□ 2.8
RPN1-208ENST00000497415 RIMBP3CA6NJZ7 1639 aa32.45■■■□□ 2.79
RPN1-208ENST00000497415 RIMBP3BA6NNM3 1639 aa32.45■■■□□ 2.79
RPN1-208ENST00000497415 RIMBP3Q9UFD9 1639 aa32.45■■■□□ 2.79
RPN1-208ENST00000497415 ARHGEF11O15085 1522 aa32.41■■■□□ 2.78
RPN1-208ENST00000497415 ERICH3Q5RHP9 1530 aa32.39■■■□□ 2.78
RPN1-208ENST00000497415 CLASP1Q7Z460 1538 aa32.39■■■□□ 2.78
RPN1-208ENST00000497415 TRIM41Q8WV44 630 aa32.37■■■□□ 2.77
RPN1-208ENST00000497415 ADAMTS12P58397 1594 aa32.36■■■□□ 2.77
RPN1-208ENST00000497415 FHAD1B1AJZ9 1412 aa32.31■■■□□ 2.76
RPN1-208ENST00000497415 GRIN2AQ12879 1464 aa32.29■■■□□ 2.76
RPN1-208ENST00000497415 KIF27Q86VH2 1401 aa32.2■■■□□ 2.75
RPN1-208ENST00000497415 NUP160Q12769 1436 aa32.18■■■□□ 2.74
RPN1-208ENST00000497415 CEP170Q5SW79 1584 aa32.15■■■□□ 2.74
RPN1-208ENST00000497415 ARAP1Q96P48 1450 aa32.15■■■□□ 2.74
RPN1-208ENST00000497415 IGF1RP08069 1367 aa32.13■■■□□ 2.73
RPN1-208ENST00000497415 CYB5RLQ6IPT4 315 aa32.1■■■□□ 2.73
RPN1-208ENST00000497415 CUL7Q14999 1698 aa32.05■■■□□ 2.72
RPN1-208ENST00000497415 SHROOM2Q13796 1616 aa31.98■■■□□ 2.71
RPN1-208ENST00000497415 CARMIL1Q5VZK9 1371 aa31.92■■■□□ 2.7
RPN1-208ENST00000497415 ERCC6L2Q5T890 1561 aa31.9■■■□□ 2.7
RPN1-208ENST00000497415 RUSC2Q8N2Y8 1516 aa31.9■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms