RNA–Protein interactions for RNA: ENST00000496882.5

SRRM1-220, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 5

Gene SRRM1, Length 834 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-220ENST00000496882 NISCHQ9Y2I1 1504 aa19.19■□□□□ 0.66
SRRM1-220ENST00000496882 CHIC1Q5VXU3 224 aa18.97■□□□□ 0.63
SRRM1-220ENST00000496882 AEBP2Q6ZN18 517 aaPredicted RBP18.74■□□□□ 0.59
SRRM1-220ENST00000496882 CCDC180Q9P1Z9 1646 aa17.17■□□□□ 0.34
SRRM1-220ENST00000496882 ABCC9O60706 1549 aa17.03■□□□□ 0.32
SRRM1-220ENST00000496882 PHF23Q9BUL5 403 aaPredicted RBP16.73■□□□□ 0.27
SRRM1-220ENST00000496882 RB1CC1Q8TDY2 1594 aa16.3■□□□□ 0.2
SRRM1-220ENST00000496882 DCAF8L2P0C7V8 631 aa16.23■□□□□ 0.19
SRRM1-220ENST00000496882 NACADO15069 1562 aa16.21■□□□□ 0.18
SRRM1-220ENST00000496882 MYO15BQ96JP2 1530 aa16.02■□□□□ 0.15
SRRM1-220ENST00000496882 ZCCHC6Q5VYS8 1495 aaKnown RBP15.93■□□□□ 0.14
SRRM1-220ENST00000496882 PABPN1Q86U42 306 aaKnown RBP eCLIP15.88■□□□□ 0.13
SRRM1-220ENST00000496882 DCAF1Q9Y4B6 1507 aa15.86■□□□□ 0.13
SRRM1-220ENST00000496882 SENP3Q9H4L4 574 aaPredicted RBP15.85■□□□□ 0.13
SRRM1-220ENST00000496882 UNC13AQ9UPW8 1703 aa15.82■□□□□ 0.12
SRRM1-220ENST00000496882 DNAJC5BQ9UF47 199 aa15.75■□□□□ 0.11
SRRM1-220ENST00000496882 PLPPR3Q6T4P5 718 aa15.73■□□□□ 0.11
SRRM1-220ENST00000496882 BICRAQ9NZM4 1560 aa15.72■□□□□ 0.11
SRRM1-220ENST00000496882 SCRIBQ14160 1630 aa15.65■□□□□ 0.1
SRRM1-220ENST00000496882 SHROOM4Q9ULL8 1493 aa15.63■□□□□ 0.09
SRRM1-220ENST00000496882 EIF4G1Q04637 1599 aaKnown RBP15.38■□□□□ 0.05
SRRM1-220ENST00000496882 CC2D2AQ9P2K1 1620 aa15.37■□□□□ 0.05
SRRM1-220ENST00000496882 CECR2Q9BXF3 1484 aa15.33■□□□□ 0.05
SRRM1-220ENST00000496882 SMARCA4P51532 1647 aa14.94□□□□□ -0.02
SRRM1-220ENST00000496882 NCAPD3P42695 1498 aa14.94□□□□□ -0.02
SRRM1-220ENST00000496882 SMARCA2P51531 1590 aa14.93□□□□□ -0.02
SRRM1-220ENST00000496882 BAZ1AQ9NRL2 1556 aaPredicted RBP14.92□□□□□ -0.02
SRRM1-220ENST00000496882 ATAD2BQ9ULI0 1458 aa14.91□□□□□ -0.02
SRRM1-220ENST00000496882 HMGXB3Q12766 1538 aa14.86□□□□□ -0.03
SRRM1-220ENST00000496882 BAZ1BQ9UIG0 1483 aaKnown RBP14.82□□□□□ -0.04
SRRM1-220ENST00000496882 PEG3Q9GZU2 1588 aa14.77□□□□□ -0.04
SRRM1-220ENST00000496882 MROH2BQ7Z745 1585 aa14.77□□□□□ -0.05
SRRM1-220ENST00000496882 ERCC6Q03468 1493 aa14.76□□□□□ -0.05
SRRM1-220ENST00000496882 ADRA2BP18089 450 aa14.66□□□□□ -0.06
SRRM1-220ENST00000496882 CUX2O14529 1486 aa14.64□□□□□ -0.07
SRRM1-220ENST00000496882 NESP48681 1621 aa14.63□□□□□ -0.07
SRRM1-220ENST00000496882 LAMC3Q9Y6N6 1575 aa14.61□□□□□ -0.07
SRRM1-220ENST00000496882 FOXD1Q16676 465 aa14.6□□□□□ -0.07
SRRM1-220ENST00000496882 WIZO95785 1651 aa14.59□□□□□ -0.07
SRRM1-220ENST00000496882 PDS5BQ9NTI5 1447 aa14.56□□□□□ -0.08
SRRM1-220ENST00000496882 PPP6R1Q9UPN7 881 aa14.54□□□□□ -0.08
SRRM1-220ENST00000496882 RSF1Q96T23 1441 aaPredicted RBP14.53□□□□□ -0.08
SRRM1-220ENST00000496882 CADPSQ9ULU8 1353 aa14.52□□□□□ -0.08
SRRM1-220ENST00000496882 THOC2Q8NI27 1593 aaKnown RBP14.46□□□□□ -0.09
SRRM1-220ENST00000496882 TOP2AP11388 1531 aaKnown RBP14.46□□□□□ -0.1
SRRM1-220ENST00000496882 KIF21AQ7Z4S6 1674 aa14.46□□□□□ -0.1
SRRM1-220ENST00000496882 DNAJC5Q9H3Z4 198 aa14.42□□□□□ -0.1
SRRM1-220ENST00000496882 MRC2Q9UBG0 1479 aa14.39□□□□□ -0.11
SRRM1-220ENST00000496882 CEP164Q9UPV0 1460 aa14.38□□□□□ -0.11
SRRM1-220ENST00000496882 CFTRP13569 1480 aa14.37□□□□□ -0.11
SRRM1-220ENST00000496882 FANCD2Q9BXW9 1451 aa14.36□□□□□ -0.11
SRRM1-220ENST00000496882 KCNA4P22459 653 aa14.33□□□□□ -0.12
SRRM1-220ENST00000496882 WDR62O43379 1518 aa14.31□□□□□ -0.12
SRRM1-220ENST00000496882 CCDC88BA6NC98 1476 aa14.27□□□□□ -0.12
SRRM1-220ENST00000496882 PRDM2Q13029 1718 aa14.22□□□□□ -0.13
SRRM1-220ENST00000496882 URB2Q14146 1524 aaKnown RBP14.19□□□□□ -0.14
SRRM1-220ENST00000496882 EHMT2Q96KQ7 1210 aa14.16□□□□□ -0.14
SRRM1-220ENST00000496882 ABCC8Q09428 1581 aa14.12□□□□□ -0.15
SRRM1-220ENST00000496882 IFT140Q96RY7 1462 aa14.08□□□□□ -0.16
SRRM1-220ENST00000496882 TOPBP1Q92547 1522 aa14.08□□□□□ -0.16
SRRM1-220ENST00000496882 SUPT5HO00267 1087 aaKnown RBP14.07□□□□□ -0.16
SRRM1-220ENST00000496882 DNMBPQ6XZF7 1577 aa14.06□□□□□ -0.16
SRRM1-220ENST00000496882 OSCARQ8IYS5 282 aa14.02□□□□□ -0.17
SRRM1-220ENST00000496882 ZNF608Q9ULD9 1512 aaPredicted RBP13.98□□□□□ -0.17
SRRM1-220ENST00000496882 PIAS4Q8N2W9 510 aaPredicted RBP13.96□□□□□ -0.17
SRRM1-220ENST00000496882 POLA1P09884 1462 aaPredicted RBP13.94□□□□□ -0.18
SRRM1-220ENST00000496882 EIF4G3O43432 1585 aaKnown RBP13.94□□□□□ -0.18
SRRM1-220ENST00000496882 PPP4R3CPQ6ZMV5 832 aa13.93□□□□□ -0.18
SRRM1-220ENST00000496882 TRIM41Q8WV44 630 aa13.92□□□□□ -0.18
SRRM1-220ENST00000496882 SOGA1O94964 1423 aa13.91□□□□□ -0.18
SRRM1-220ENST00000496882 TARBP1Q13395 1621 aaKnown RBP13.91□□□□□ -0.18
SRRM1-220ENST00000496882 AQRO60306 1485 aaKnown RBP eCLIP13.9□□□□□ -0.187e-7■■■■■ 28.7
SRRM1-220ENST00000496882 FGD5Q6ZNL6 1462 aa13.89□□□□□ -0.19
SRRM1-220ENST00000496882 RAD54L2Q9Y4B4 1467 aa13.88□□□□□ -0.19
SRRM1-220ENST00000496882 CUX1P39880 1505 aa13.87□□□□□ -0.19
SRRM1-220ENST00000496882 FBLN2P98095 1184 aa13.86□□□□□ -0.19
SRRM1-220ENST00000496882 WDR97A6NE52 1622 aa13.85□□□□□ -0.19
SRRM1-220ENST00000496882 TDRD9Q8NDG6 1382 aaKnown RBP13.84□□□□□ -0.19
SRRM1-220ENST00000496882 NCBP3Q53F19 620 aaKnown RBP13.8□□□□□ -0.2
SRRM1-220ENST00000496882 SLC4A1APQ9BWU0 796 aaKnown RBP13.8□□□□□ -0.2
SRRM1-220ENST00000496882 GRIN2BQ13224 1484 aa13.79□□□□□ -0.2
SRRM1-220ENST00000496882 CHD1O14646 1710 aa13.78□□□□□ -0.2
SRRM1-220ENST00000496882 CHMP7Q8WUX9 453 aaPredicted RBP13.78□□□□□ -0.2
SRRM1-220ENST00000496882 SNAPC4Q5SXM2 1469 aa13.78□□□□□ -0.2
SRRM1-220ENST00000496882 MAGI1Q96QZ7 1491 aaPredicted RBP13.77□□□□□ -0.21
SRRM1-220ENST00000496882 WRNQ14191 1432 aaPredicted RBP eCLIP13.76□□□□□ -0.21
SRRM1-220ENST00000496882 RIMBP3CA6NJZ7 1639 aa13.75□□□□□ -0.21
SRRM1-220ENST00000496882 RIMBP3BA6NNM3 1639 aa13.75□□□□□ -0.21
SRRM1-220ENST00000496882 RIMBP3Q9UFD9 1639 aa13.75□□□□□ -0.21
SRRM1-220ENST00000496882 GAPVD1Q14C86 1478 aa13.75□□□□□ -0.21
SRRM1-220ENST00000496882 ARHGEF11O15085 1522 aa13.74□□□□□ -0.21
SRRM1-220ENST00000496882 ABCA10Q8WWZ4 1543 aa13.74□□□□□ -0.21
SRRM1-220ENST00000496882 SYNJ2O15056 1496 aa13.71□□□□□ -0.21
SRRM1-220ENST00000496882 TOP2BQ02880 1626 aa13.71□□□□□ -0.22
SRRM1-220ENST00000496882 SYNJ1O43426 1573 aa13.71□□□□□ -0.22
SRRM1-220ENST00000496882 PBRM1Q86U86 1689 aa13.7□□□□□ -0.22
SRRM1-220ENST00000496882 BIVM-ERCC5R4GMW8 1640 aa13.7□□□□□ -0.22
SRRM1-220ENST00000496882 ABCA5Q8WWZ7 1642 aa13.68□□□□□ -0.22
SRRM1-220ENST00000496882 CYB5RLQ6IPT4 315 aa13.67□□□□□ -0.22
SRRM1-220ENST00000496882 CSRNP3Q8WYN3 585 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms