RNA–Protein interactions for RNA: ENST00000496744.5

ECM1-206, Transcript of extracellular matrix protein 1, humanhuman

TSL 3

Gene ECM1, Length 1,030 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECM1-206ENST00000496744 NISCHQ9Y2I1 1504 aa26.93■■□□□ 1.9
ECM1-206ENST00000496744 CCDC180Q9P1Z9 1646 aa23.95■■□□□ 1.43
ECM1-206ENST00000496744 ABCC9O60706 1549 aa23.7■■□□□ 1.38
ECM1-206ENST00000496744 RB1CC1Q8TDY2 1594 aa22.66■■□□□ 1.22
ECM1-206ENST00000496744 NACADO15069 1562 aa22.61■■□□□ 1.21
ECM1-206ENST00000496744 DCAF8L2P0C7V8 631 aa22.58■■□□□ 1.21
ECM1-206ENST00000496744 MYO15BQ96JP2 1530 aa22.43■■□□□ 1.18
ECM1-206ENST00000496744 ZCCHC6Q5VYS8 1495 aaKnown RBP22.38■■□□□ 1.17
ECM1-206ENST00000496744 DCAF1Q9Y4B6 1507 aa22.26■■□□□ 1.15
ECM1-206ENST00000496744 PABPN1Q86U42 306 aaKnown RBP eCLIP22.17■■□□□ 1.14
ECM1-206ENST00000496744 UNC13AQ9UPW8 1703 aa22.15■■□□□ 1.14
ECM1-206ENST00000496744 DNAJC5BQ9UF47 199 aa22.07■■□□□ 1.12
ECM1-206ENST00000496744 BICRAQ9NZM4 1560 aa22.06■■□□□ 1.12
ECM1-206ENST00000496744 SCRIBQ14160 1630 aa21.87■■□□□ 1.09
ECM1-206ENST00000496744 SHROOM4Q9ULL8 1493 aa21.74■■□□□ 1.07
ECM1-206ENST00000496744 EIF4G1Q04637 1599 aaKnown RBP21.46■■□□□ 1.03
ECM1-206ENST00000496744 CC2D2AQ9P2K1 1620 aa21.42■■□□□ 1.02
ECM1-206ENST00000496744 CECR2Q9BXF3 1484 aa21.32■■□□□ 1
ECM1-206ENST00000496744 NCAPD3P42695 1498 aa20.93■□□□□ 0.94
ECM1-206ENST00000496744 SMARCA4P51532 1647 aa20.91■□□□□ 0.94
ECM1-206ENST00000496744 ATAD2BQ9ULI0 1458 aa20.89■□□□□ 0.94
ECM1-206ENST00000496744 BAZ1AQ9NRL2 1556 aaPredicted RBP20.85■□□□□ 0.93
ECM1-206ENST00000496744 SMARCA2P51531 1590 aa20.8■□□□□ 0.92
ECM1-206ENST00000496744 MROH2BQ7Z745 1585 aa20.77■□□□□ 0.92
ECM1-206ENST00000496744 HMGXB3Q12766 1538 aa20.74■□□□□ 0.91
ECM1-206ENST00000496744 PEG3Q9GZU2 1588 aa20.73■□□□□ 0.91
ECM1-206ENST00000496744 BAZ1BQ9UIG0 1483 aaKnown RBP20.66■□□□□ 0.9
ECM1-206ENST00000496744 WIZO95785 1651 aa20.5■□□□□ 0.87
ECM1-206ENST00000496744 RSF1Q96T23 1441 aaPredicted RBP20.48■□□□□ 0.87
ECM1-206ENST00000496744 NESP48681 1621 aa20.48■□□□□ 0.87
ECM1-206ENST00000496744 ERCC6Q03468 1493 aa20.39■□□□□ 0.85
ECM1-206ENST00000496744 LAMC3Q9Y6N6 1575 aa20.34■□□□□ 0.85
ECM1-206ENST00000496744 CADPSQ9ULU8 1353 aa20.3■□□□□ 0.84
ECM1-206ENST00000496744 CUX2O14529 1486 aa20.28■□□□□ 0.84
ECM1-206ENST00000496744 TOP2AP11388 1531 aaKnown RBP20.26■□□□□ 0.83
ECM1-206ENST00000496744 PDS5BQ9NTI5 1447 aa20.22■□□□□ 0.83
ECM1-206ENST00000496744 THOC2Q8NI27 1593 aaKnown RBP20.17■□□□□ 0.82
ECM1-206ENST00000496744 KIF21AQ7Z4S6 1674 aa20.16■□□□□ 0.82
ECM1-206ENST00000496744 CFTRP13569 1480 aa20.13■□□□□ 0.81
ECM1-206ENST00000496744 CCDC88BA6NC98 1476 aa20.06■□□□□ 0.8
ECM1-206ENST00000496744 FANCD2Q9BXW9 1451 aa20.03■□□□□ 0.8
ECM1-206ENST00000496744 MRC2Q9UBG0 1479 aa20.03■□□□□ 0.8
ECM1-206ENST00000496744 CEP164Q9UPV0 1460 aa20■□□□□ 0.79
ECM1-206ENST00000496744 DNAJC5Q9H3Z4 198 aa19.99■□□□□ 0.79
ECM1-206ENST00000496744 WDR62O43379 1518 aa19.97■□□□□ 0.79
ECM1-206ENST00000496744 URB2Q14146 1524 aaKnown RBP19.87■□□□□ 0.77
ECM1-206ENST00000496744 PRDM2Q13029 1718 aa19.84■□□□□ 0.77
ECM1-206ENST00000496744 SUPT5HO00267 1087 aaKnown RBP19.77■□□□□ 0.76
ECM1-206ENST00000496744 TOPBP1Q92547 1522 aa19.7■□□□□ 0.74
ECM1-206ENST00000496744 ABCC8Q09428 1581 aa19.66■□□□□ 0.74
ECM1-206ENST00000496744 DNMBPQ6XZF7 1577 aa19.62■□□□□ 0.73
ECM1-206ENST00000496744 IFT140Q96RY7 1462 aa19.6■□□□□ 0.73
ECM1-206ENST00000496744 ZNF608Q9ULD9 1512 aaPredicted RBP19.58■□□□□ 0.73
ECM1-206ENST00000496744 POLA1P09884 1462 aaPredicted RBP19.52■□□□□ 0.72
ECM1-206ENST00000496744 TARBP1Q13395 1621 aaKnown RBP19.5■□□□□ 0.71
ECM1-206ENST00000496744 CUX1P39880 1505 aa19.48■□□□□ 0.71
ECM1-206ENST00000496744 RAD54L2Q9Y4B4 1467 aa19.46■□□□□ 0.71
ECM1-206ENST00000496744 OSCARQ8IYS5 282 aa19.45■□□□□ 0.7
ECM1-206ENST00000496744 AQRO60306 1485 aaKnown RBP eCLIP19.45■□□□□ 0.7
ECM1-206ENST00000496744 SOGA1O94964 1423 aa19.44■□□□□ 0.7
ECM1-206ENST00000496744 FGD5Q6ZNL6 1462 aa19.43■□□□□ 0.7
ECM1-206ENST00000496744 EIF4G3O43432 1585 aaKnown RBP19.42■□□□□ 0.7
ECM1-206ENST00000496744 TDRD9Q8NDG6 1382 aaKnown RBP19.38■□□□□ 0.69
ECM1-206ENST00000496744 WDR97A6NE52 1622 aa19.27■□□□□ 0.68
ECM1-206ENST00000496744 WRNQ14191 1432 aaPredicted RBP eCLIP19.26■□□□□ 0.67
ECM1-206ENST00000496744 ABCA10Q8WWZ4 1543 aa19.24■□□□□ 0.67
ECM1-206ENST00000496744 TOP2BQ02880 1626 aa19.23■□□□□ 0.67
ECM1-206ENST00000496744 SYNJ1O43426 1573 aa19.23■□□□□ 0.67
ECM1-206ENST00000496744 GRIN2BQ13224 1484 aa19.22■□□□□ 0.67
ECM1-206ENST00000496744 SNAPC4Q5SXM2 1469 aa19.22■□□□□ 0.67
ECM1-206ENST00000496744 FBLN2P98095 1184 aa19.21■□□□□ 0.67
ECM1-206ENST00000496744 BIVM-ERCC5R4GMW8 1640 aa19.21■□□□□ 0.67
ECM1-206ENST00000496744 CHD1O14646 1710 aa19.2■□□□□ 0.66
ECM1-206ENST00000496744 GAPVD1Q14C86 1478 aa19.2■□□□□ 0.66
ECM1-206ENST00000496744 TRIM41Q8WV44 630 aa19.18■□□□□ 0.66
ECM1-206ENST00000496744 MAGI1Q96QZ7 1491 aaPredicted RBP19.17■□□□□ 0.66
ECM1-206ENST00000496744 ABCA5Q8WWZ7 1642 aa19.15■□□□□ 0.66
ECM1-206ENST00000496744 CHMP7Q8WUX9 453 aaPredicted RBP19.14■□□□□ 0.65
ECM1-206ENST00000496744 RIMBP3CA6NJZ7 1639 aa19.11■□□□□ 0.65
ECM1-206ENST00000496744 RIMBP3BA6NNM3 1639 aa19.11■□□□□ 0.65
ECM1-206ENST00000496744 RIMBP3Q9UFD9 1639 aa19.11■□□□□ 0.65
ECM1-206ENST00000496744 SYNJ2O15056 1496 aa19.11■□□□□ 0.65
ECM1-206ENST00000496744 PBRM1Q86U86 1689 aa19.11■□□□□ 0.65
ECM1-206ENST00000496744 ARHGEF11O15085 1522 aa19.1■□□□□ 0.65
ECM1-206ENST00000496744 CLASP1Q7Z460 1538 aa19.05■□□□□ 0.64
ECM1-206ENST00000496744 CYB5RLQ6IPT4 315 aa18.98■□□□□ 0.63
ECM1-206ENST00000496744 ERICH3Q5RHP9 1530 aa18.98■□□□□ 0.63
ECM1-206ENST00000496744 ADAMTS12P58397 1594 aa18.98■□□□□ 0.63
ECM1-206ENST00000496744 GRIN2AQ12879 1464 aa18.97■□□□□ 0.63
ECM1-206ENST00000496744 FHAD1B1AJZ9 1412 aa18.97■□□□□ 0.63
ECM1-206ENST00000496744 ARAP1Q96P48 1450 aa18.96■□□□□ 0.63
ECM1-206ENST00000496744 NUP160Q12769 1436 aa18.92■□□□□ 0.62
ECM1-206ENST00000496744 IGF1RP08069 1367 aa18.89■□□□□ 0.61
ECM1-206ENST00000496744 CEP170Q5SW79 1584 aa18.89■□□□□ 0.61
ECM1-206ENST00000496744 KIF27Q86VH2 1401 aa18.87■□□□□ 0.61
ECM1-206ENST00000496744 ERCC6L2Q5T890 1561 aa18.79■□□□□ 0.6
ECM1-206ENST00000496744 SHROOM2Q13796 1616 aa18.78■□□□□ 0.6
ECM1-206ENST00000496744 JPH4Q96JJ6 628 aa18.75■□□□□ 0.59
ECM1-206ENST00000496744 CARMIL1Q5VZK9 1371 aa18.73■□□□□ 0.59
ECM1-206ENST00000496744 CUL7Q14999 1698 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms