RNA–Protein interactions for RNA: ENST00000496636.1

SH3D21-204, Transcript of SH3 domain containing 21, humanhuman

TSL 3

Gene SH3D21, Length 383 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3D21-204ENST00000496636 NISCHQ9Y2I1 1504 aa24.84■■□□□ 1.57
SH3D21-204ENST00000496636 ABCC9O60706 1549 aa22.83■■□□□ 1.25
SH3D21-204ENST00000496636 CCDC180Q9P1Z9 1646 aa22.5■■□□□ 1.19
SH3D21-204ENST00000496636 DNAJC5BQ9UF47 199 aa21.69■■□□□ 1.06
SH3D21-204ENST00000496636 RB1CC1Q8TDY2 1594 aa21.62■■□□□ 1.05
SH3D21-204ENST00000496636 NACADO15069 1562 aa21.39■■□□□ 1.01
SH3D21-204ENST00000496636 PABPN1Q86U42 306 aaKnown RBP eCLIP21.13■□□□□ 0.97
SH3D21-204ENST00000496636 DCAF8L2P0C7V8 631 aa21.02■□□□□ 0.96
SH3D21-204ENST00000496636 MYO15BQ96JP2 1530 aa21.01■□□□□ 0.95
SH3D21-204ENST00000496636 UNC13AQ9UPW8 1703 aa20.98■□□□□ 0.95
SH3D21-204ENST00000496636 BICRAQ9NZM4 1560 aa20.93■□□□□ 0.94
SH3D21-204ENST00000496636 SHROOM4Q9ULL8 1493 aa20.81■□□□□ 0.92
SH3D21-204ENST00000496636 CECR2Q9BXF3 1484 aa20.66■□□□□ 0.9
SH3D21-204ENST00000496636 CC2D2AQ9P2K1 1620 aa20.6■□□□□ 0.89
SH3D21-204ENST00000496636 DCAF1Q9Y4B6 1507 aa20.57■□□□□ 0.88
SH3D21-204ENST00000496636 ZCCHC6Q5VYS8 1495 aaKnown RBP20.53■□□□□ 0.88
SH3D21-204ENST00000496636 EIF4G1Q04637 1599 aaKnown RBP20.5■□□□□ 0.87
SH3D21-204ENST00000496636 SCRIBQ14160 1630 aa20.4■□□□□ 0.86
SH3D21-204ENST00000496636 DNAJC5Q9H3Z4 198 aa20.32■□□□□ 0.84
SH3D21-204ENST00000496636 CUX2O14529 1486 aa19.95■□□□□ 0.78
SH3D21-204ENST00000496636 ERCC6Q03468 1493 aa19.81■□□□□ 0.76
SH3D21-204ENST00000496636 NCAPD3P42695 1498 aa19.73■□□□□ 0.75
SH3D21-204ENST00000496636 ATAD2BQ9ULI0 1458 aa19.6■□□□□ 0.73
SH3D21-204ENST00000496636 HMGXB3Q12766 1538 aa19.58■□□□□ 0.73
SH3D21-204ENST00000496636 SMARCA2P51531 1590 aa19.57■□□□□ 0.72
SH3D21-204ENST00000496636 NESP48681 1621 aa19.46■□□□□ 0.71
SH3D21-204ENST00000496636 SMARCA4P51532 1647 aa19.46■□□□□ 0.71
SH3D21-204ENST00000496636 THOC2Q8NI27 1593 aaKnown RBP19.41■□□□□ 0.7
SH3D21-204ENST00000496636 BAZ1BQ9UIG0 1483 aaKnown RBP19.41■□□□□ 0.7
SH3D21-204ENST00000496636 LAMC3Q9Y6N6 1575 aa19.36■□□□□ 0.69
SH3D21-204ENST00000496636 BAZ1AQ9NRL2 1556 aaPredicted RBP19.34■□□□□ 0.69
SH3D21-204ENST00000496636 PEG3Q9GZU2 1588 aa19.32■□□□□ 0.68
SH3D21-204ENST00000496636 PDS5BQ9NTI5 1447 aa19.28■□□□□ 0.68
SH3D21-204ENST00000496636 TRIM41Q8WV44 630 aa19.21■□□□□ 0.67
SH3D21-204ENST00000496636 KIF21AQ7Z4S6 1674 aa19.19■□□□□ 0.66
SH3D21-204ENST00000496636 MRC2Q9UBG0 1479 aa19.13■□□□□ 0.65
SH3D21-204ENST00000496636 CADPSQ9ULU8 1353 aa19.1■□□□□ 0.65
SH3D21-204ENST00000496636 WDR62O43379 1518 aa19.1■□□□□ 0.65
SH3D21-204ENST00000496636 MROH2BQ7Z745 1585 aa19.09■□□□□ 0.65
SH3D21-204ENST00000496636 CEP164Q9UPV0 1460 aa18.97■□□□□ 0.63
SH3D21-204ENST00000496636 OSCARQ8IYS5 282 aa18.89■□□□□ 0.61
SH3D21-204ENST00000496636 FANCD2Q9BXW9 1451 aa18.88■□□□□ 0.61
SH3D21-204ENST00000496636 CFTRP13569 1480 aa18.81■□□□□ 0.6
SH3D21-204ENST00000496636 WIZO95785 1651 aa18.79■□□□□ 0.6
SH3D21-204ENST00000496636 URB2Q14146 1524 aaKnown RBP18.72■□□□□ 0.59
SH3D21-204ENST00000496636 RIMBP3CA6NJZ7 1639 aa18.67■□□□□ 0.58
SH3D21-204ENST00000496636 RIMBP3BA6NNM3 1639 aa18.67■□□□□ 0.58
SH3D21-204ENST00000496636 RIMBP3Q9UFD9 1639 aa18.67■□□□□ 0.58
SH3D21-204ENST00000496636 TOP2AP11388 1531 aaKnown RBP18.64■□□□□ 0.57
SH3D21-204ENST00000496636 IFT140Q96RY7 1462 aa18.62■□□□□ 0.57
SH3D21-204ENST00000496636 ARHGEF11O15085 1522 aa18.62■□□□□ 0.57
SH3D21-204ENST00000496636 RSF1Q96T23 1441 aaPredicted RBP18.57■□□□□ 0.56
SH3D21-204ENST00000496636 ZNF608Q9ULD9 1512 aaPredicted RBP18.54■□□□□ 0.56
SH3D21-204ENST00000496636 PRDM2Q13029 1718 aa18.52■□□□□ 0.56
SH3D21-204ENST00000496636 TOPBP1Q92547 1522 aa18.47■□□□□ 0.55
SH3D21-204ENST00000496636 ABCC8Q09428 1581 aa18.47■□□□□ 0.55
SH3D21-204ENST00000496636 EIF4G3O43432 1585 aaKnown RBP18.46■□□□□ 0.55
SH3D21-204ENST00000496636 CYB5RLQ6IPT4 315 aa18.43■□□□□ 0.54
SH3D21-204ENST00000496636 ARAP1Q96P48 1450 aa18.39■□□□□ 0.54
SH3D21-204ENST00000496636 DNMBPQ6XZF7 1577 aa18.39■□□□□ 0.53
SH3D21-204ENST00000496636 TRHP20396 242 aaPredicted RBP18.37■□□□□ 0.53
SH3D21-204ENST00000496636 CCDC88BA6NC98 1476 aa18.37■□□□□ 0.53
SH3D21-204ENST00000496636 CHD1O14646 1710 aa18.33■□□□□ 0.52
SH3D21-204ENST00000496636 TARBP1Q13395 1621 aaKnown RBP18.32■□□□□ 0.52
SH3D21-204ENST00000496636 AQRO60306 1485 aaKnown RBP eCLIP18.31■□□□□ 0.52
SH3D21-204ENST00000496636 FBLN2P98095 1184 aa18.27■□□□□ 0.52
SH3D21-204ENST00000496636 POLA1P09884 1462 aaPredicted RBP18.26■□□□□ 0.51
SH3D21-204ENST00000496636 WDR97A6NE52 1622 aa18.21■□□□□ 0.51
SH3D21-204ENST00000496636 CLASP1Q7Z460 1538 aa18.19■□□□□ 0.5
SH3D21-204ENST00000496636 AEBP2Q6ZN18 517 aaPredicted RBP18.18■□□□□ 0.5
SH3D21-204ENST00000496636 SYNJ1O43426 1573 aa18.17■□□□□ 0.5
SH3D21-204ENST00000496636 SNAPC4Q5SXM2 1469 aa18.16■□□□□ 0.5
SH3D21-204ENST00000496636 MAGI1Q96QZ7 1491 aaPredicted RBP18.15■□□□□ 0.5
SH3D21-204ENST00000496636 SOGA1O94964 1423 aa18.15■□□□□ 0.5
SH3D21-204ENST00000496636 RAD54L2Q9Y4B4 1467 aa18.14■□□□□ 0.5
SH3D21-204ENST00000496636 TDRD9Q8NDG6 1382 aaKnown RBP18.14■□□□□ 0.49
SH3D21-204ENST00000496636 CHMP7Q8WUX9 453 aaPredicted RBP18.11■□□□□ 0.49
SH3D21-204ENST00000496636 SYNJ2O15056 1496 aa18.08■□□□□ 0.49
SH3D21-204ENST00000496636 GRIN2BQ13224 1484 aa18.08■□□□□ 0.49
SH3D21-204ENST00000496636 FGD5Q6ZNL6 1462 aa18.07■□□□□ 0.48
SH3D21-204ENST00000496636 GAPVD1Q14C86 1478 aa18.03■□□□□ 0.48
SH3D21-204ENST00000496636 CUX1P39880 1505 aa17.98■□□□□ 0.47
SH3D21-204ENST00000496636 PBRM1Q86U86 1689 aa17.9■□□□□ 0.46
SH3D21-204ENST00000496636 ABCA10Q8WWZ4 1543 aa17.88■□□□□ 0.45
SH3D21-204ENST00000496636 ABCA5Q8WWZ7 1642 aa17.87■□□□□ 0.45
SH3D21-204ENST00000496636 GRIN2AQ12879 1464 aa17.84■□□□□ 0.45
SH3D21-204ENST00000496636 NUP160Q12769 1436 aa17.81■□□□□ 0.44
SH3D21-204ENST00000496636 CEP170Q5SW79 1584 aa17.79■□□□□ 0.44
SH3D21-204ENST00000496636 ERCC6L2Q5T890 1561 aa17.79■□□□□ 0.44
SH3D21-204ENST00000496636 ADAMTS12P58397 1594 aa17.79■□□□□ 0.44
SH3D21-204ENST00000496636 SHROOM2Q13796 1616 aa17.75■□□□□ 0.43
SH3D21-204ENST00000496636 WRNQ14191 1432 aaPredicted RBP eCLIP17.73■□□□□ 0.43
SH3D21-204ENST00000496636 FHAD1B1AJZ9 1412 aa17.72■□□□□ 0.43
SH3D21-204ENST00000496636 KIF13AQ9H1H9 1805 aa17.66■□□□□ 0.42
SH3D21-204ENST00000496636 ERICH3Q5RHP9 1530 aa17.66■□□□□ 0.42
SH3D21-204ENST00000496636 PRG4Q92954 1404 aaPredicted RBP17.63■□□□□ 0.41
SH3D21-204ENST00000496636 ABCC10Q5T3U5 1492 aa17.63■□□□□ 0.41
SH3D21-204ENST00000496636 MAPKBP1O60336 1514 aa17.61■□□□□ 0.41
SH3D21-204ENST00000496636 TOP2BQ02880 1626 aa17.6■□□□□ 0.41
SH3D21-204ENST00000496636 BIVM-ERCC5R4GMW8 1640 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms