RNA–Protein interactions for RNA: ENST00000496375.1

CXCL12-208, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 5

Gene CXCL12, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-208ENST00000496375 NISCHQ9Y2I1 1504 aa35.88■■■■□ 3.33
CXCL12-208ENST00000496375 CCDC180Q9P1Z9 1646 aa32.17■■■□□ 2.74
CXCL12-208ENST00000496375 ABCC9O60706 1549 aa32.1■■■□□ 2.73
CXCL12-208ENST00000496375 RB1CC1Q8TDY2 1594 aa30.58■■■□□ 2.49
CXCL12-208ENST00000496375 NACADO15069 1562 aa30.38■■■□□ 2.45
CXCL12-208ENST00000496375 DCAF8L2P0C7V8 631 aa30.27■■■□□ 2.44
CXCL12-208ENST00000496375 DNAJC5BQ9UF47 199 aa30.03■■■□□ 2.4
CXCL12-208ENST00000496375 MYO15BQ96JP2 1530 aa29.98■■■□□ 2.39
CXCL12-208ENST00000496375 UNC13AQ9UPW8 1703 aa29.91■■■□□ 2.38
CXCL12-208ENST00000496375 PABPN1Q86U42 306 aaKnown RBP eCLIP29.9■■■□□ 2.38
CXCL12-208ENST00000496375 ZCCHC6Q5VYS8 1495 aaKnown RBP29.76■■■□□ 2.35
CXCL12-208ENST00000496375 BICRAQ9NZM4 1560 aa29.69■■■□□ 2.34
CXCL12-208ENST00000496375 DCAF1Q9Y4B6 1507 aa29.64■■■□□ 2.34
CXCL12-208ENST00000496375 SCRIBQ14160 1630 aa29.34■■■□□ 2.29
CXCL12-208ENST00000496375 SHROOM4Q9ULL8 1493 aa29.29■■■□□ 2.28
CXCL12-208ENST00000496375 CC2D2AQ9P2K1 1620 aa29■■■□□ 2.23
CXCL12-208ENST00000496375 EIF4G1Q04637 1599 aaKnown RBP28.96■■■□□ 2.23
CXCL12-208ENST00000496375 CECR2Q9BXF3 1484 aa28.91■■■□□ 2.22
CXCL12-208ENST00000496375 NCAPD3P42695 1498 aa28.04■■■□□ 2.08
CXCL12-208ENST00000496375 ATAD2BQ9ULI0 1458 aa27.98■■■□□ 2.07
CXCL12-208ENST00000496375 SMARCA4P51532 1647 aa27.98■■■□□ 2.07
CXCL12-208ENST00000496375 SMARCA2P51531 1590 aa27.9■■■□□ 2.06
CXCL12-208ENST00000496375 BAZ1AQ9NRL2 1556 aaPredicted RBP27.86■■■□□ 2.05
CXCL12-208ENST00000496375 HMGXB3Q12766 1538 aa27.85■■■□□ 2.05
CXCL12-208ENST00000496375 BAZ1BQ9UIG0 1483 aaKnown RBP27.72■■■□□ 2.03
CXCL12-208ENST00000496375 ERCC6Q03468 1493 aa27.71■■■□□ 2.03
CXCL12-208ENST00000496375 PEG3Q9GZU2 1588 aa27.69■■■□□ 2.02
CXCL12-208ENST00000496375 MROH2BQ7Z745 1585 aa27.65■■■□□ 2.02
CXCL12-208ENST00000496375 CUX2O14529 1486 aa27.62■■■□□ 2.01
CXCL12-208ENST00000496375 NESP48681 1621 aa27.6■■■□□ 2.01
CXCL12-208ENST00000496375 DNAJC5Q9H3Z4 198 aa27.51■■□□□ 1.99
CXCL12-208ENST00000496375 LAMC3Q9Y6N6 1575 aa27.41■■□□□ 1.98
CXCL12-208ENST00000496375 WIZO95785 1651 aa27.34■■□□□ 1.97
CXCL12-208ENST00000496375 THOC2Q8NI27 1593 aaKnown RBP27.31■■□□□ 1.96
CXCL12-208ENST00000496375 PDS5BQ9NTI5 1447 aa27.25■■□□□ 1.95
CXCL12-208ENST00000496375 KIF21AQ7Z4S6 1674 aa27.25■■□□□ 1.95
CXCL12-208ENST00000496375 CADPSQ9ULU8 1353 aa27.21■■□□□ 1.95
CXCL12-208ENST00000496375 RSF1Q96T23 1441 aaPredicted RBP27.11■■□□□ 1.93
CXCL12-208ENST00000496375 MRC2Q9UBG0 1479 aa27.01■■□□□ 1.91
CXCL12-208ENST00000496375 TOP2AP11388 1531 aaKnown RBP26.99■■□□□ 1.91
CXCL12-208ENST00000496375 WDR62O43379 1518 aa26.94■■□□□ 1.9
CXCL12-208ENST00000496375 CEP164Q9UPV0 1460 aa26.93■■□□□ 1.9
CXCL12-208ENST00000496375 CFTRP13569 1480 aa26.91■■□□□ 1.9
CXCL12-208ENST00000496375 FANCD2Q9BXW9 1451 aa26.9■■□□□ 1.9
CXCL12-208ENST00000496375 CCDC88BA6NC98 1476 aa26.68■■□□□ 1.86
CXCL12-208ENST00000496375 URB2Q14146 1524 aaKnown RBP26.68■■□□□ 1.86
CXCL12-208ENST00000496375 PRDM2Q13029 1718 aa26.67■■□□□ 1.86
CXCL12-208ENST00000496375 TOPBP1Q92547 1522 aa26.4■■□□□ 1.82
CXCL12-208ENST00000496375 IFT140Q96RY7 1462 aa26.38■■□□□ 1.81
CXCL12-208ENST00000496375 OSCARQ8IYS5 282 aa26.37■■□□□ 1.81
CXCL12-208ENST00000496375 TRIM41Q8WV44 630 aa26.36■■□□□ 1.81
CXCL12-208ENST00000496375 ZNF608Q9ULD9 1512 aaPredicted RBP26.34■■□□□ 1.81
CXCL12-208ENST00000496375 ABCC8Q09428 1581 aa26.34■■□□□ 1.81
CXCL12-208ENST00000496375 DNMBPQ6XZF7 1577 aa26.32■■□□□ 1.8
CXCL12-208ENST00000496375 EIF4G3O43432 1585 aaKnown RBP26.2■■□□□ 1.79
CXCL12-208ENST00000496375 TARBP1Q13395 1621 aaKnown RBP26.16■■□□□ 1.78
CXCL12-208ENST00000496375 POLA1P09884 1462 aaPredicted RBP26.14■■□□□ 1.78
CXCL12-208ENST00000496375 AQRO60306 1485 aaKnown RBP eCLIP26.11■■□□□ 1.77
CXCL12-208ENST00000496375 RAD54L2Q9Y4B4 1467 aa26.05■■□□□ 1.76
CXCL12-208ENST00000496375 RIMBP3CA6NJZ7 1639 aa26.04■■□□□ 1.76
CXCL12-208ENST00000496375 RIMBP3BA6NNM3 1639 aa26.04■■□□□ 1.76
CXCL12-208ENST00000496375 RIMBP3Q9UFD9 1639 aa26.04■■□□□ 1.76
CXCL12-208ENST00000496375 SOGA1O94964 1423 aa26.02■■□□□ 1.76
CXCL12-208ENST00000496375 CHD1O14646 1710 aa26■■□□□ 1.75
CXCL12-208ENST00000496375 FGD5Q6ZNL6 1462 aa25.99■■□□□ 1.75
CXCL12-208ENST00000496375 SUPT5HO00267 1087 aaKnown RBP25.98■■□□□ 1.75
CXCL12-208ENST00000496375 CUX1P39880 1505 aa25.98■■□□□ 1.75
CXCL12-208ENST00000496375 TDRD9Q8NDG6 1382 aaKnown RBP25.96■■□□□ 1.75
CXCL12-208ENST00000496375 ARHGEF11O15085 1522 aa25.96■■□□□ 1.75
CXCL12-208ENST00000496375 FBLN2P98095 1184 aa25.93■■□□□ 1.74
CXCL12-208ENST00000496375 WDR97A6NE52 1622 aa25.9■■□□□ 1.74
CXCL12-208ENST00000496375 SNAPC4Q5SXM2 1469 aa25.85■■□□□ 1.73
CXCL12-208ENST00000496375 GRIN2BQ13224 1484 aa25.79■■□□□ 1.72
CXCL12-208ENST00000496375 MAGI1Q96QZ7 1491 aaPredicted RBP25.78■■□□□ 1.72
CXCL12-208ENST00000496375 CYB5RLQ6IPT4 315 aa25.76■■□□□ 1.71
CXCL12-208ENST00000496375 CHMP7Q8WUX9 453 aaPredicted RBP25.75■■□□□ 1.71
CXCL12-208ENST00000496375 ARAP1Q96P48 1450 aa25.72■■□□□ 1.71
CXCL12-208ENST00000496375 GAPVD1Q14C86 1478 aa25.71■■□□□ 1.71
CXCL12-208ENST00000496375 PBRM1Q86U86 1689 aa25.71■■□□□ 1.71
CXCL12-208ENST00000496375 CLASP1Q7Z460 1538 aa25.69■■□□□ 1.7
CXCL12-208ENST00000496375 ABCA10Q8WWZ4 1543 aa25.69■■□□□ 1.7
CXCL12-208ENST00000496375 SYNJ2O15056 1496 aa25.69■■□□□ 1.7
CXCL12-208ENST00000496375 SYNJ1O43426 1573 aa25.69■■□□□ 1.7
CXCL12-208ENST00000496375 ABCA5Q8WWZ7 1642 aa25.65■■□□□ 1.7
CXCL12-208ENST00000496375 WRNQ14191 1432 aaPredicted RBP eCLIP25.61■■□□□ 1.69
CXCL12-208ENST00000496375 TOP2BQ02880 1626 aa25.59■■□□□ 1.69
CXCL12-208ENST00000496375 BIVM-ERCC5R4GMW8 1640 aa25.59■■□□□ 1.69
CXCL12-208ENST00000496375 TRHP20396 242 aaPredicted RBP25.46■■□□□ 1.67
CXCL12-208ENST00000496375 ADAMTS12P58397 1594 aa25.46■■□□□ 1.67
CXCL12-208ENST00000496375 GRIN2AQ12879 1464 aa25.46■■□□□ 1.67
CXCL12-208ENST00000496375 FHAD1B1AJZ9 1412 aa25.38■■□□□ 1.65
CXCL12-208ENST00000496375 ERICH3Q5RHP9 1530 aa25.37■■□□□ 1.65
CXCL12-208ENST00000496375 CEP170Q5SW79 1584 aa25.37■■□□□ 1.65
CXCL12-208ENST00000496375 NUP160Q12769 1436 aa25.37■■□□□ 1.65
CXCL12-208ENST00000496375 ERCC6L2Q5T890 1561 aa25.31■■□□□ 1.64
CXCL12-208ENST00000496375 SHROOM2Q13796 1616 aa25.24■■□□□ 1.63
CXCL12-208ENST00000496375 PRG4Q92954 1404 aaPredicted RBP25.12■■□□□ 1.61
CXCL12-208ENST00000496375 JPH4Q96JJ6 628 aa25.11■■□□□ 1.61
CXCL12-208ENST00000496375 RUSC2Q8N2Y8 1516 aa25.1■■□□□ 1.61
CXCL12-208ENST00000496375 KIF27Q86VH2 1401 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms