RNA–Protein interactions for RNA: ENST00000496332.5

THBS3-208, Transcript of thrombospondin 3, humanhuman

TSL 3

Gene THBS3, Length 839 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-208ENST00000496332 NISCHQ9Y2I1 1504 aa29.1■■■□□ 2.25
THBS3-208ENST00000496332 CCDC180Q9P1Z9 1646 aa25.92■■□□□ 1.74
THBS3-208ENST00000496332 ABCC9O60706 1549 aa25.69■■□□□ 1.7
THBS3-208ENST00000496332 RB1CC1Q8TDY2 1594 aa24.56■■□□□ 1.52
THBS3-208ENST00000496332 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
THBS3-208ENST00000496332 NACADO15069 1562 aa24.47■■□□□ 1.51
THBS3-208ENST00000496332 MYO15BQ96JP2 1530 aa24.24■■□□□ 1.47
THBS3-208ENST00000496332 ZCCHC6Q5VYS8 1495 aaKnown RBP24.18■■□□□ 1.46
THBS3-208ENST00000496332 DCAF1Q9Y4B6 1507 aa24.04■■□□□ 1.44
THBS3-208ENST00000496332 PABPN1Q86U42 306 aaKnown RBP eCLIP24.01■■□□□ 1.43
THBS3-208ENST00000496332 UNC13AQ9UPW8 1703 aa23.96■■□□□ 1.43
THBS3-208ENST00000496332 DNAJC5BQ9UF47 199 aa23.86■■□□□ 1.41
THBS3-208ENST00000496332 BICRAQ9NZM4 1560 aa23.83■■□□□ 1.41
THBS3-208ENST00000496332 SCRIBQ14160 1630 aa23.69■■□□□ 1.38
THBS3-208ENST00000496332 SHROOM4Q9ULL8 1493 aa23.54■■□□□ 1.36
THBS3-208ENST00000496332 EIF4G1Q04637 1599 aaKnown RBP23.23■■□□□ 1.31
THBS3-208ENST00000496332 CC2D2AQ9P2K1 1620 aa23.19■■□□□ 1.3
THBS3-208ENST00000496332 CECR2Q9BXF3 1484 aa23.11■■□□□ 1.29
THBS3-208ENST00000496332 NCAPD3P42695 1498 aa22.61■■□□□ 1.21
THBS3-208ENST00000496332 SMARCA4P51532 1647 aa22.61■■□□□ 1.21
THBS3-208ENST00000496332 ATAD2BQ9ULI0 1458 aa22.59■■□□□ 1.21
THBS3-208ENST00000496332 BAZ1AQ9NRL2 1556 aaPredicted RBP22.56■■□□□ 1.2
THBS3-208ENST00000496332 SMARCA2P51531 1590 aa22.52■■□□□ 1.2
THBS3-208ENST00000496332 HMGXB3Q12766 1538 aa22.44■■□□□ 1.18
THBS3-208ENST00000496332 MROH2BQ7Z745 1585 aa22.44■■□□□ 1.18
THBS3-208ENST00000496332 PEG3Q9GZU2 1588 aa22.39■■□□□ 1.18
THBS3-208ENST00000496332 BAZ1BQ9UIG0 1483 aaKnown RBP22.39■■□□□ 1.17
THBS3-208ENST00000496332 ERCC6Q03468 1493 aa22.16■■□□□ 1.14
THBS3-208ENST00000496332 WIZO95785 1651 aa22.16■■□□□ 1.14
THBS3-208ENST00000496332 NESP48681 1621 aa22.16■■□□□ 1.14
THBS3-208ENST00000496332 RSF1Q96T23 1441 aaPredicted RBP22.1■■□□□ 1.13
THBS3-208ENST00000496332 LAMC3Q9Y6N6 1575 aa22.03■■□□□ 1.12
THBS3-208ENST00000496332 CUX2O14529 1486 aa21.99■■□□□ 1.11
THBS3-208ENST00000496332 CADPSQ9ULU8 1353 aa21.96■■□□□ 1.11
THBS3-208ENST00000496332 PDS5BQ9NTI5 1447 aa21.92■■□□□ 1.1
THBS3-208ENST00000496332 TOP2AP11388 1531 aaKnown RBP21.91■■□□□ 1.1
THBS3-208ENST00000496332 KIF21AQ7Z4S6 1674 aa21.84■■□□□ 1.09
THBS3-208ENST00000496332 THOC2Q8NI27 1593 aaKnown RBP21.82■■□□□ 1.08
THBS3-208ENST00000496332 CFTRP13569 1480 aa21.76■■□□□ 1.07
THBS3-208ENST00000496332 MRC2Q9UBG0 1479 aa21.71■■□□□ 1.07
THBS3-208ENST00000496332 CCDC88BA6NC98 1476 aa21.69■■□□□ 1.06
THBS3-208ENST00000496332 FANCD2Q9BXW9 1451 aa21.69■■□□□ 1.06
THBS3-208ENST00000496332 CEP164Q9UPV0 1460 aa21.68■■□□□ 1.06
THBS3-208ENST00000496332 DNAJC5Q9H3Z4 198 aa21.67■■□□□ 1.06
THBS3-208ENST00000496332 WDR62O43379 1518 aa21.62■■□□□ 1.05
THBS3-208ENST00000496332 URB2Q14146 1524 aaKnown RBP21.49■■□□□ 1.03
THBS3-208ENST00000496332 PRDM2Q13029 1718 aa21.47■■□□□ 1.03
THBS3-208ENST00000496332 SUPT5HO00267 1087 aaKnown RBP21.41■■□□□ 1.02
THBS3-208ENST00000496332 TOPBP1Q92547 1522 aa21.31■■□□□ 1
THBS3-208ENST00000496332 ABCC8Q09428 1581 aa21.29■■□□□ 1
THBS3-208ENST00000496332 IFT140Q96RY7 1462 aa21.25■□□□□ 0.99
THBS3-208ENST00000496332 DNMBPQ6XZF7 1577 aa21.24■□□□□ 0.99
THBS3-208ENST00000496332 ZNF608Q9ULD9 1512 aaPredicted RBP21.19■□□□□ 0.98
THBS3-208ENST00000496332 POLA1P09884 1462 aaPredicted RBP21.12■□□□□ 0.97
THBS3-208ENST00000496332 OSCARQ8IYS5 282 aa21.09■□□□□ 0.97
THBS3-208ENST00000496332 TARBP1Q13395 1621 aaKnown RBP21.07■□□□□ 0.96
THBS3-208ENST00000496332 SOGA1O94964 1423 aa21.05■□□□□ 0.96
THBS3-208ENST00000496332 CUX1P39880 1505 aa21.05■□□□□ 0.96
THBS3-208ENST00000496332 AQRO60306 1485 aaKnown RBP eCLIP21.05■□□□□ 0.96
THBS3-208ENST00000496332 RAD54L2Q9Y4B4 1467 aa21.05■□□□□ 0.96
THBS3-208ENST00000496332 EIF4G3O43432 1585 aaKnown RBP21.05■□□□□ 0.96
THBS3-208ENST00000496332 FGD5Q6ZNL6 1462 aa21.03■□□□□ 0.96
THBS3-208ENST00000496332 TDRD9Q8NDG6 1382 aaKnown RBP20.97■□□□□ 0.95
THBS3-208ENST00000496332 FBLN2P98095 1184 aa20.88■□□□□ 0.93
THBS3-208ENST00000496332 WDR97A6NE52 1622 aa20.87■□□□□ 0.93
THBS3-208ENST00000496332 TRIM41Q8WV44 630 aa20.87■□□□□ 0.93
THBS3-208ENST00000496332 WRNQ14191 1432 aaPredicted RBP eCLIP20.84■□□□□ 0.93
THBS3-208ENST00000496332 SNAPC4Q5SXM2 1469 aa20.82■□□□□ 0.92
THBS3-208ENST00000496332 GRIN2BQ13224 1484 aa20.81■□□□□ 0.92
THBS3-208ENST00000496332 CHD1O14646 1710 aa20.81■□□□□ 0.92
THBS3-208ENST00000496332 ABCA10Q8WWZ4 1543 aa20.8■□□□□ 0.92
THBS3-208ENST00000496332 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
THBS3-208ENST00000496332 SYNJ1O43426 1573 aa20.78■□□□□ 0.92
THBS3-208ENST00000496332 GAPVD1Q14C86 1478 aa20.78■□□□□ 0.92
THBS3-208ENST00000496332 CHMP7Q8WUX9 453 aaPredicted RBP20.77■□□□□ 0.92
THBS3-208ENST00000496332 BIVM-ERCC5R4GMW8 1640 aa20.77■□□□□ 0.92
THBS3-208ENST00000496332 MAGI1Q96QZ7 1491 aaPredicted RBP20.76■□□□□ 0.91
THBS3-208ENST00000496332 RIMBP3CA6NJZ7 1639 aa20.73■□□□□ 0.91
THBS3-208ENST00000496332 RIMBP3BA6NNM3 1639 aa20.73■□□□□ 0.91
THBS3-208ENST00000496332 RIMBP3Q9UFD9 1639 aa20.73■□□□□ 0.91
THBS3-208ENST00000496332 ABCA5Q8WWZ7 1642 aa20.72■□□□□ 0.91
THBS3-208ENST00000496332 SYNJ2O15056 1496 aa20.7■□□□□ 0.9
THBS3-208ENST00000496332 ARHGEF11O15085 1522 aa20.7■□□□□ 0.9
THBS3-208ENST00000496332 PBRM1Q86U86 1689 aa20.7■□□□□ 0.9
THBS3-208ENST00000496332 CLASP1Q7Z460 1538 aa20.6■□□□□ 0.89
THBS3-208ENST00000496332 CYB5RLQ6IPT4 315 aa20.59■□□□□ 0.89
THBS3-208ENST00000496332 ADAMTS12P58397 1594 aa20.55■□□□□ 0.88
THBS3-208ENST00000496332 FHAD1B1AJZ9 1412 aa20.54■□□□□ 0.88
THBS3-208ENST00000496332 ERICH3Q5RHP9 1530 aa20.54■□□□□ 0.88
THBS3-208ENST00000496332 GRIN2AQ12879 1464 aa20.54■□□□□ 0.88
THBS3-208ENST00000496332 ARAP1Q96P48 1450 aa20.53■□□□□ 0.88
THBS3-208ENST00000496332 NUP160Q12769 1436 aa20.45■□□□□ 0.86
THBS3-208ENST00000496332 CEP170Q5SW79 1584 aa20.44■□□□□ 0.86
THBS3-208ENST00000496332 KIF27Q86VH2 1401 aa20.43■□□□□ 0.86
THBS3-208ENST00000496332 IGF1RP08069 1367 aa20.4■□□□□ 0.86
THBS3-208ENST00000496332 ERCC6L2Q5T890 1561 aa20.33■□□□□ 0.84
THBS3-208ENST00000496332 SHROOM2Q13796 1616 aa20.3■□□□□ 0.84
THBS3-208ENST00000496332 JPH4Q96JJ6 628 aa20.29■□□□□ 0.84
THBS3-208ENST00000496332 CUL7Q14999 1698 aa20.29■□□□□ 0.84
THBS3-208ENST00000496332 TRHP20396 242 aaPredicted RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms