RNA–Protein interactions for RNA: ENST00000496323.1

SPTBN1-205, Transcript of spectrin beta, non-erythrocytic 1, humanhuman

TSL 2

Gene SPTBN1, Length 2,225 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTBN1-205ENST00000496323 NISCHQ9Y2I1 1504 aa30.67■■■□□ 2.5
SPTBN1-205ENST00000496323 CCDC180Q9P1Z9 1646 aa26.54■■□□□ 1.84
SPTBN1-205ENST00000496323 ZCCHC6Q5VYS8 1495 aaKnown RBP25.8■■□□□ 1.72
SPTBN1-205ENST00000496323 DCAF8L2P0C7V8 631 aa25.36■■□□□ 1.65
SPTBN1-205ENST00000496323 DCAF1Q9Y4B6 1507 aa25.31■■□□□ 1.64
SPTBN1-205ENST00000496323 SHROOM4Q9ULL8 1493 aa25.23■■□□□ 1.63
SPTBN1-205ENST00000496323 ABCC9O60706 1549 aa25.12■■□□□ 1.61
SPTBN1-205ENST00000496323 MYO15BQ96JP2 1530 aa24.95■■□□□ 1.58
SPTBN1-205ENST00000496323 NACADO15069 1562 aa24.74■■□□□ 1.55
SPTBN1-205ENST00000496323 SCRIBQ14160 1630 aa24.54■■□□□ 1.52
SPTBN1-205ENST00000496323 RB1CC1Q8TDY2 1594 aa24.48■■□□□ 1.51
SPTBN1-205ENST00000496323 SUPT5HO00267 1087 aaKnown RBP24.35■■□□□ 1.49
SPTBN1-205ENST00000496323 UNC13AQ9UPW8 1703 aa23.95■■□□□ 1.42
SPTBN1-205ENST00000496323 RSF1Q96T23 1441 aaPredicted RBP23.91■■□□□ 1.42
SPTBN1-205ENST00000496323 CECR2Q9BXF3 1484 aa23.89■■□□□ 1.42
SPTBN1-205ENST00000496323 BICRAQ9NZM4 1560 aa23.82■■□□□ 1.4
SPTBN1-205ENST00000496323 PABPN1Q86U42 306 aaKnown RBP eCLIP23.8■■□□□ 1.4
SPTBN1-205ENST00000496323 MROH2BQ7Z745 1585 aa23.74■■□□□ 1.39
SPTBN1-205ENST00000496323 BAZ1AQ9NRL2 1556 aaPredicted RBP23.63■■□□□ 1.37
SPTBN1-205ENST00000496323 WIZO95785 1651 aa23.51■■□□□ 1.35
SPTBN1-205ENST00000496323 SMARCA4P51532 1647 aa23.51■■□□□ 1.35
SPTBN1-205ENST00000496323 CHIC1Q5VXU3 224 aa23.39■■□□□ 1.34
SPTBN1-205ENST00000496323 TOP2AP11388 1531 aaKnown RBP23.25■■□□□ 1.31
SPTBN1-205ENST00000496323 PEG3Q9GZU2 1588 aa23.21■■□□□ 1.31
SPTBN1-205ENST00000496323 ATAD2BQ9ULI0 1458 aa23.14■■□□□ 1.3
SPTBN1-205ENST00000496323 CCDC88BA6NC98 1476 aa23.08■■□□□ 1.29
SPTBN1-205ENST00000496323 EIF4G1Q04637 1599 aaKnown RBP23.07■■□□□ 1.28
SPTBN1-205ENST00000496323 SMARCA2P51531 1590 aa23.06■■□□□ 1.28
SPTBN1-205ENST00000496323 BAZ1BQ9UIG0 1483 aaKnown RBP22.99■■□□□ 1.27
SPTBN1-205ENST00000496323 NCAPD3P42695 1498 aa22.9■■□□□ 1.26
SPTBN1-205ENST00000496323 TRIM41Q8WV44 630 aa22.84■■□□□ 1.25
SPTBN1-205ENST00000496323 HMGXB3Q12766 1538 aa22.83■■□□□ 1.25
SPTBN1-205ENST00000496323 CC2D2AQ9P2K1 1620 aa22.68■■□□□ 1.22
SPTBN1-205ENST00000496323 ABCC8Q09428 1581 aa22.64■■□□□ 1.21
SPTBN1-205ENST00000496323 LOC105371045A0A1W2PR82 267 aa22.55■■□□□ 1.2
SPTBN1-205ENST00000496323 FAM9AQ8IZU1 332 aaPredicted RBP22.48■■□□□ 1.19
SPTBN1-205ENST00000496323 WRNQ14191 1432 aaPredicted RBP eCLIP22.47■■□□□ 1.19
SPTBN1-205ENST00000496323 CFTRP13569 1480 aa22.45■■□□□ 1.18
SPTBN1-205ENST00000496323 SYNJ1O43426 1573 aa22.36■■□□□ 1.17
SPTBN1-205ENST00000496323 CADPSQ9ULU8 1353 aa22.35■■□□□ 1.17
SPTBN1-205ENST00000496323 SOGA1O94964 1423 aa22.29■■□□□ 1.16
SPTBN1-205ENST00000496323 DNAJC5BQ9UF47 199 aa22.27■■□□□ 1.16
SPTBN1-205ENST00000496323 TOP2BQ02880 1626 aa22.21■■□□□ 1.15
SPTBN1-205ENST00000496323 RUSC2Q8N2Y8 1516 aa22.21■■□□□ 1.15
SPTBN1-205ENST00000496323 EHMT2Q96KQ7 1210 aa22.19■■□□□ 1.14
SPTBN1-205ENST00000496323 CUX1P39880 1505 aa22.17■■□□□ 1.14
SPTBN1-205ENST00000496323 EEA1Q15075 1411 aa22.17■■□□□ 1.14
SPTBN1-205ENST00000496323 BIVM-ERCC5R4GMW8 1640 aa22.15■■□□□ 1.14
SPTBN1-205ENST00000496323 PRDM2Q13029 1718 aa22.14■■□□□ 1.13
SPTBN1-205ENST00000496323 NESP48681 1621 aa22.13■■□□□ 1.13
SPTBN1-205ENST00000496323 CSRNP3Q8WYN3 585 aa22.12■■□□□ 1.13
SPTBN1-205ENST00000496323 FANCD2Q9BXW9 1451 aa22.08■■□□□ 1.13
SPTBN1-205ENST00000496323 LAMC3Q9Y6N6 1575 aa22.03■■□□□ 1.12
SPTBN1-205ENST00000496323 FGD5Q6ZNL6 1462 aa21.9■■□□□ 1.1
SPTBN1-205ENST00000496323 PDS5BQ9NTI5 1447 aa21.9■■□□□ 1.1
SPTBN1-205ENST00000496323 GOLGA3Q08378 1498 aa21.89■■□□□ 1.1
SPTBN1-205ENST00000496323 CEP164Q9UPV0 1460 aa21.89■■□□□ 1.1
SPTBN1-205ENST00000496323 TNIKQ9UKE5 1360 aa21.89■■□□□ 1.1
SPTBN1-205ENST00000496323 KIF27Q86VH2 1401 aa21.87■■□□□ 1.09
SPTBN1-205ENST00000496323 DNMBPQ6XZF7 1577 aa21.86■■□□□ 1.09
SPTBN1-205ENST00000496323 KIF21BO75037 1637 aa21.86■■□□□ 1.09
SPTBN1-205ENST00000496323 TOPBP1Q92547 1522 aa21.86■■□□□ 1.09
SPTBN1-205ENST00000496323 UBTFP17480 764 aaKnown RBP21.84■■□□□ 1.09
SPTBN1-205ENST00000496323 URB2Q14146 1524 aaKnown RBP21.82■■□□□ 1.08
SPTBN1-205ENST00000496323 RAPGEF2Q9Y4G8 1499 aa21.81■■□□□ 1.08
SPTBN1-205ENST00000496323 CEP162Q5TB80 1403 aa21.8■■□□□ 1.08
SPTBN1-205ENST00000496323 CUX2O14529 1486 aa21.79■■□□□ 1.08
SPTBN1-205ENST00000496323 PRXQ9BXM0 1461 aa21.79■■□□□ 1.08
SPTBN1-205ENST00000496323 POLA1P09884 1462 aaPredicted RBP21.77■■□□□ 1.08
SPTBN1-205ENST00000496323 RAD54L2Q9Y4B4 1467 aa21.75■■□□□ 1.07
SPTBN1-205ENST00000496323 KIF21AQ7Z4S6 1674 aa21.74■■□□□ 1.07
SPTBN1-205ENST00000496323 IGF1RP08069 1367 aa21.72■■□□□ 1.07
SPTBN1-205ENST00000496323 ERICH3Q5RHP9 1530 aa21.69■■□□□ 1.06
SPTBN1-205ENST00000496323 ABCA10Q8WWZ4 1543 aa21.69■■□□□ 1.06
SPTBN1-205ENST00000496323 PCGF6Q9BYE7 350 aa21.64■■□□□ 1.05
SPTBN1-205ENST00000496323 MRC2Q9UBG0 1479 aa21.61■■□□□ 1.05
SPTBN1-205ENST00000496323 CLIP1P30622 1438 aa21.59■■□□□ 1.05
SPTBN1-205ENST00000496323 CARMIL1Q5VZK9 1371 aa21.58■■□□□ 1.05
SPTBN1-205ENST00000496323 TRIM26Q12899 539 aaPredicted RBP21.55■■□□□ 1.04
SPTBN1-205ENST00000496323 WDR97A6NE52 1622 aa21.53■■□□□ 1.04
SPTBN1-205ENST00000496323 TDRD9Q8NDG6 1382 aaKnown RBP21.53■■□□□ 1.04
SPTBN1-205ENST00000496323 RANGAP1P46060 587 aaPredicted RBP21.49■■□□□ 1.03
SPTBN1-205ENST00000496323 TARBP1Q13395 1621 aaKnown RBP21.49■■□□□ 1.03
SPTBN1-205ENST00000496323 PPARGC1BQ86YN6 1023 aaKnown RBP21.48■■□□□ 1.03
SPTBN1-205ENST00000496323 WDR62O43379 1518 aa21.48■■□□□ 1.03
SPTBN1-205ENST00000496323 ERCC6Q03468 1493 aa21.47■■□□□ 1.03
SPTBN1-205ENST00000496323 ABCA5Q8WWZ7 1642 aa21.47■■□□□ 1.03
SPTBN1-205ENST00000496323 GAPVD1Q14C86 1478 aa21.46■■□□□ 1.03
SPTBN1-205ENST00000496323 VPS8Q8N3P4 1428 aa21.41■■□□□ 1.02
SPTBN1-205ENST00000496323 CUL7Q14999 1698 aa21.39■■□□□ 1.01
SPTBN1-205ENST00000496323 ARAP1Q96P48 1450 aa21.37■■□□□ 1.01
SPTBN1-205ENST00000496323 IFT140Q96RY7 1462 aa21.37■■□□□ 1.01
SPTBN1-205ENST00000496323 THOC2Q8NI27 1593 aaKnown RBP21.37■■□□□ 1.01
SPTBN1-205ENST00000496323 AQRO60306 1485 aaKnown RBP eCLIP21.36■■□□□ 1.016e-8■■■■□ 20.1
SPTBN1-205ENST00000496323 ARHGAP35Q9NRY4 1499 aa21.33■■□□□ 1.01
SPTBN1-205ENST00000496323 ZNF608Q9ULD9 1512 aaPredicted RBP21.32■■□□□ 1
SPTBN1-205ENST00000496323 TTBK1Q5TCY1 1321 aaPredicted RBP21.26■□□□□ 0.99
SPTBN1-205ENST00000496323 GRIN2BQ13224 1484 aa21.25■□□□□ 0.99
SPTBN1-205ENST00000496323 FHAD1B1AJZ9 1412 aa21.23■□□□□ 0.99
SPTBN1-205ENST00000496323 PBRM1Q86U86 1689 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms