RNA–Protein interactions for RNA: ENST00000496262.1

RNF220-217, Transcript of ring finger protein 220, humanhuman

TSL 2

Gene RNF220, Length 840 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220-217ENST00000496262 NISCHQ9Y2I1 1504 aa27.14■■□□□ 1.94
RNF220-217ENST00000496262 ABCC9O60706 1549 aa24.38■■□□□ 1.49
RNF220-217ENST00000496262 CCDC180Q9P1Z9 1646 aa24.3■■□□□ 1.48
RNF220-217ENST00000496262 RB1CC1Q8TDY2 1594 aa23.15■■□□□ 1.3
RNF220-217ENST00000496262 DCAF8L2P0C7V8 631 aa23.03■■□□□ 1.28
RNF220-217ENST00000496262 NACADO15069 1562 aa22.97■■□□□ 1.27
RNF220-217ENST00000496262 DNAJC5BQ9UF47 199 aa22.8■■□□□ 1.24
RNF220-217ENST00000496262 PABPN1Q86U42 306 aaKnown RBP eCLIP22.73■■□□□ 1.23
RNF220-217ENST00000496262 MYO15BQ96JP2 1530 aa22.61■■□□□ 1.21
RNF220-217ENST00000496262 UNC13AQ9UPW8 1703 aa22.6■■□□□ 1.21
RNF220-217ENST00000496262 ZCCHC6Q5VYS8 1495 aaKnown RBP22.5■■□□□ 1.19
RNF220-217ENST00000496262 BICRAQ9NZM4 1560 aa22.46■■□□□ 1.19
RNF220-217ENST00000496262 DCAF1Q9Y4B6 1507 aa22.35■■□□□ 1.17
RNF220-217ENST00000496262 SCRIBQ14160 1630 aa22.25■■□□□ 1.15
RNF220-217ENST00000496262 SHROOM4Q9ULL8 1493 aa22.11■■□□□ 1.13
RNF220-217ENST00000496262 CC2D2AQ9P2K1 1620 aa21.98■■□□□ 1.11
RNF220-217ENST00000496262 EIF4G1Q04637 1599 aaKnown RBP21.94■■□□□ 1.1
RNF220-217ENST00000496262 CECR2Q9BXF3 1484 aa21.93■■□□□ 1.1
RNF220-217ENST00000496262 NCAPD3P42695 1498 aa21.2■□□□□ 0.98
RNF220-217ENST00000496262 ATAD2BQ9ULI0 1458 aa21.19■□□□□ 0.98
RNF220-217ENST00000496262 SMARCA4P51532 1647 aa21.18■□□□□ 0.98
RNF220-217ENST00000496262 SMARCA2P51531 1590 aa21.11■□□□□ 0.97
RNF220-217ENST00000496262 HMGXB3Q12766 1538 aa21.07■□□□□ 0.96
RNF220-217ENST00000496262 BAZ1AQ9NRL2 1556 aaPredicted RBP21.06■□□□□ 0.96
RNF220-217ENST00000496262 ERCC6Q03468 1493 aa21.05■□□□□ 0.96
RNF220-217ENST00000496262 BAZ1BQ9UIG0 1483 aaKnown RBP21.01■□□□□ 0.95
RNF220-217ENST00000496262 NESP48681 1621 aa20.95■□□□□ 0.94
RNF220-217ENST00000496262 MROH2BQ7Z745 1585 aa20.94■□□□□ 0.94
RNF220-217ENST00000496262 CUX2O14529 1486 aa20.92■□□□□ 0.94
RNF220-217ENST00000496262 PEG3Q9GZU2 1588 aa20.91■□□□□ 0.94
RNF220-217ENST00000496262 DNAJC5Q9H3Z4 198 aa20.87■□□□□ 0.93
RNF220-217ENST00000496262 LAMC3Q9Y6N6 1575 aa20.73■□□□□ 0.91
RNF220-217ENST00000496262 WIZO95785 1651 aa20.7■□□□□ 0.9
RNF220-217ENST00000496262 THOC2Q8NI27 1593 aaKnown RBP20.68■□□□□ 0.9
RNF220-217ENST00000496262 KIF21AQ7Z4S6 1674 aa20.64■□□□□ 0.9
RNF220-217ENST00000496262 PDS5BQ9NTI5 1447 aa20.64■□□□□ 0.89
RNF220-217ENST00000496262 CADPSQ9ULU8 1353 aa20.59■□□□□ 0.89
RNF220-217ENST00000496262 RSF1Q96T23 1441 aaPredicted RBP20.51■□□□□ 0.87
RNF220-217ENST00000496262 MRC2Q9UBG0 1479 aa20.48■□□□□ 0.87
RNF220-217ENST00000496262 TOP2AP11388 1531 aaKnown RBP20.42■□□□□ 0.86
RNF220-217ENST00000496262 CEP164Q9UPV0 1460 aa20.41■□□□□ 0.86
RNF220-217ENST00000496262 WDR62O43379 1518 aa20.4■□□□□ 0.86
RNF220-217ENST00000496262 FANCD2Q9BXW9 1451 aa20.39■□□□□ 0.85
RNF220-217ENST00000496262 CFTRP13569 1480 aa20.36■□□□□ 0.85
RNF220-217ENST00000496262 URB2Q14146 1524 aaKnown RBP20.22■□□□□ 0.83
RNF220-217ENST00000496262 CCDC88BA6NC98 1476 aa20.2■□□□□ 0.82
RNF220-217ENST00000496262 PRDM2Q13029 1718 aa20.13■□□□□ 0.81
RNF220-217ENST00000496262 TRIM41Q8WV44 630 aa20.1■□□□□ 0.81
RNF220-217ENST00000496262 OSCARQ8IYS5 282 aa20■□□□□ 0.79
RNF220-217ENST00000496262 TOPBP1Q92547 1522 aa20■□□□□ 0.79
RNF220-217ENST00000496262 ZNF608Q9ULD9 1512 aaPredicted RBP19.98■□□□□ 0.79
RNF220-217ENST00000496262 IFT140Q96RY7 1462 aa19.98■□□□□ 0.79
RNF220-217ENST00000496262 AEBP2Q6ZN18 517 aaPredicted RBP19.93■□□□□ 0.78
RNF220-217ENST00000496262 DNMBPQ6XZF7 1577 aa19.91■□□□□ 0.78
RNF220-217ENST00000496262 ABCC8Q09428 1581 aa19.91■□□□□ 0.78
RNF220-217ENST00000496262 EIF4G3O43432 1585 aaKnown RBP19.86■□□□□ 0.77
RNF220-217ENST00000496262 AQRO60306 1485 aaKnown RBP eCLIP19.81■□□□□ 0.76
RNF220-217ENST00000496262 POLA1P09884 1462 aaPredicted RBP19.79■□□□□ 0.76
RNF220-217ENST00000496262 TARBP1Q13395 1621 aaKnown RBP19.79■□□□□ 0.76
RNF220-217ENST00000496262 RAD54L2Q9Y4B4 1467 aa19.76■□□□□ 0.75
RNF220-217ENST00000496262 RIMBP3CA6NJZ7 1639 aa19.74■□□□□ 0.75
RNF220-217ENST00000496262 RIMBP3BA6NNM3 1639 aa19.74■□□□□ 0.75
RNF220-217ENST00000496262 RIMBP3Q9UFD9 1639 aa19.74■□□□□ 0.75
RNF220-217ENST00000496262 SUPT5HO00267 1087 aaKnown RBP19.73■□□□□ 0.75
RNF220-217ENST00000496262 FBLN2P98095 1184 aa19.73■□□□□ 0.75
RNF220-217ENST00000496262 SOGA1O94964 1423 aa19.71■□□□□ 0.75
RNF220-217ENST00000496262 TDRD9Q8NDG6 1382 aaKnown RBP19.7■□□□□ 0.74
RNF220-217ENST00000496262 FGD5Q6ZNL6 1462 aa19.7■□□□□ 0.74
RNF220-217ENST00000496262 CHD1O14646 1710 aa19.69■□□□□ 0.74
RNF220-217ENST00000496262 ARHGEF11O15085 1522 aa19.69■□□□□ 0.74
RNF220-217ENST00000496262 CUX1P39880 1505 aa19.67■□□□□ 0.74
RNF220-217ENST00000496262 SNAPC4Q5SXM2 1469 aa19.6■□□□□ 0.73
RNF220-217ENST00000496262 CYB5RLQ6IPT4 315 aa19.58■□□□□ 0.72
RNF220-217ENST00000496262 WDR97A6NE52 1622 aa19.54■□□□□ 0.72
RNF220-217ENST00000496262 CHMP7Q8WUX9 453 aaPredicted RBP19.54■□□□□ 0.72
RNF220-217ENST00000496262 GRIN2BQ13224 1484 aa19.53■□□□□ 0.72
RNF220-217ENST00000496262 MAGI1Q96QZ7 1491 aaPredicted RBP19.51■□□□□ 0.71
RNF220-217ENST00000496262 ARAP1Q96P48 1450 aa19.5■□□□□ 0.71
RNF220-217ENST00000496262 GAPVD1Q14C86 1478 aa19.48■□□□□ 0.71
RNF220-217ENST00000496262 SYNJ2O15056 1496 aa19.46■□□□□ 0.71
RNF220-217ENST00000496262 PBRM1Q86U86 1689 aa19.46■□□□□ 0.71
RNF220-217ENST00000496262 SYNJ1O43426 1573 aa19.45■□□□□ 0.7
RNF220-217ENST00000496262 CLASP1Q7Z460 1538 aa19.45■□□□□ 0.7
RNF220-217ENST00000496262 ABCA10Q8WWZ4 1543 aa19.44■□□□□ 0.7
RNF220-217ENST00000496262 ABCA5Q8WWZ7 1642 aa19.4■□□□□ 0.7
RNF220-217ENST00000496262 TRHP20396 242 aaPredicted RBP19.39■□□□□ 0.69
RNF220-217ENST00000496262 WRNQ14191 1432 aaPredicted RBP eCLIP19.39■□□□□ 0.69
RNF220-217ENST00000496262 TOP2BQ02880 1626 aa19.34■□□□□ 0.69
RNF220-217ENST00000496262 BIVM-ERCC5R4GMW8 1640 aa19.33■□□□□ 0.69
RNF220-217ENST00000496262 GRIN2AQ12879 1464 aa19.28■□□□□ 0.68
RNF220-217ENST00000496262 ADAMTS12P58397 1594 aa19.28■□□□□ 0.68
RNF220-217ENST00000496262 CEP170Q5SW79 1584 aa19.22■□□□□ 0.67
RNF220-217ENST00000496262 FHAD1B1AJZ9 1412 aa19.21■□□□□ 0.67
RNF220-217ENST00000496262 ERCC6L2Q5T890 1561 aa19.2■□□□□ 0.66
RNF220-217ENST00000496262 NUP160Q12769 1436 aa19.19■□□□□ 0.66
RNF220-217ENST00000496262 ERICH3Q5RHP9 1530 aa19.19■□□□□ 0.66
RNF220-217ENST00000496262 SHROOM2Q13796 1616 aa19.09■□□□□ 0.65
RNF220-217ENST00000496262 PRG4Q92954 1404 aaPredicted RBP19.06■□□□□ 0.64
RNF220-217ENST00000496262 RUSC2Q8N2Y8 1516 aa19.01■□□□□ 0.63
RNF220-217ENST00000496262 JPH4Q96JJ6 628 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms