RNA–Protein interactions for RNA: ENST00000496037.1

SMARCAL1-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

TSL 4

Gene SMARCAL1, Length 542 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-213ENST00000496037 AEBP2Q6ZN18 517 aaPredicted RBP26.69■■□□□ 1.86
SMARCAL1-213ENST00000496037 CHIC1Q5VXU3 224 aa25.85■■□□□ 1.73
SMARCAL1-213ENST00000496037 NISCHQ9Y2I1 1504 aa24.96■■□□□ 1.59
SMARCAL1-213ENST00000496037 ABCC9O60706 1549 aa23.57■■□□□ 1.36
SMARCAL1-213ENST00000496037 SENP3Q9H4L4 574 aaPredicted RBP22.79■■□□□ 1.24
SMARCAL1-213ENST00000496037 CCDC180Q9P1Z9 1646 aa22.77■■□□□ 1.24
SMARCAL1-213ENST00000496037 DNAJC5BQ9UF47 199 aa22.73■■□□□ 1.23
SMARCAL1-213ENST00000496037 PHF23Q9BUL5 403 aaPredicted RBP22.66■■□□□ 1.22
SMARCAL1-213ENST00000496037 RB1CC1Q8TDY2 1594 aa22.09■■□□□ 1.13
SMARCAL1-213ENST00000496037 PABPN1Q86U42 306 aaKnown RBP eCLIP21.78■■□□□ 1.08
SMARCAL1-213ENST00000496037 NACADO15069 1562 aa21.73■■□□□ 1.07
SMARCAL1-213ENST00000496037 DNAJC5Q9H3Z4 198 aa21.52■■□□□ 1.04
SMARCAL1-213ENST00000496037 UNC13AQ9UPW8 1703 aa21.49■■□□□ 1.03
SMARCAL1-213ENST00000496037 DCAF8L2P0C7V8 631 aa21.45■■□□□ 1.02
SMARCAL1-213ENST00000496037 BICRAQ9NZM4 1560 aa21.4■■□□□ 1.02
SMARCAL1-213ENST00000496037 CECR2Q9BXF3 1484 aa21.32■■□□□ 1
SMARCAL1-213ENST00000496037 CC2D2AQ9P2K1 1620 aa21.23■□□□□ 0.99
SMARCAL1-213ENST00000496037 MYO15BQ96JP2 1530 aa21.14■□□□□ 0.98
SMARCAL1-213ENST00000496037 SHROOM4Q9ULL8 1493 aa21.13■□□□□ 0.97
SMARCAL1-213ENST00000496037 FOXD1Q16676 465 aa21.12■□□□□ 0.97
SMARCAL1-213ENST00000496037 EIF4G1Q04637 1599 aaKnown RBP21■□□□□ 0.95
SMARCAL1-213ENST00000496037 PLPPR3Q6T4P5 718 aa20.91■□□□□ 0.94
SMARCAL1-213ENST00000496037 SCRIBQ14160 1630 aa20.71■□□□□ 0.91
SMARCAL1-213ENST00000496037 CUX2O14529 1486 aa20.68■□□□□ 0.9
SMARCAL1-213ENST00000496037 DCAF1Q9Y4B6 1507 aa20.57■□□□□ 0.88
SMARCAL1-213ENST00000496037 ZCCHC6Q5VYS8 1495 aaKnown RBP20.53■□□□□ 0.88
SMARCAL1-213ENST00000496037 ERCC6Q03468 1493 aa20.47■□□□□ 0.87
SMARCAL1-213ENST00000496037 TRIM41Q8WV44 630 aa20.31■□□□□ 0.84
SMARCAL1-213ENST00000496037 PPP6R1Q9UPN7 881 aa20.08■□□□□ 0.81
SMARCAL1-213ENST00000496037 ADRA2BP18089 450 aa20.06■□□□□ 0.8
SMARCAL1-213ENST00000496037 NCAPD3P42695 1498 aa20.05■□□□□ 0.8
SMARCAL1-213ENST00000496037 NESP48681 1621 aa19.98■□□□□ 0.79
SMARCAL1-213ENST00000496037 THOC2Q8NI27 1593 aaKnown RBP19.97■□□□□ 0.79
SMARCAL1-213ENST00000496037 PIAS4Q8N2W9 510 aaPredicted RBP19.9■□□□□ 0.78
SMARCAL1-213ENST00000496037 ATAD2BQ9ULI0 1458 aa19.87■□□□□ 0.77
SMARCAL1-213ENST00000496037 HMGXB3Q12766 1538 aa19.85■□□□□ 0.77
SMARCAL1-213ENST00000496037 SMARCA2P51531 1590 aa19.83■□□□□ 0.77
SMARCAL1-213ENST00000496037 LAMC3Q9Y6N6 1575 aa19.75■□□□□ 0.75
SMARCAL1-213ENST00000496037 PDS5BQ9NTI5 1447 aa19.69■□□□□ 0.74
SMARCAL1-213ENST00000496037 KIF21AQ7Z4S6 1674 aa19.69■□□□□ 0.74
SMARCAL1-213ENST00000496037 BAZ1BQ9UIG0 1483 aaKnown RBP19.68■□□□□ 0.74
SMARCAL1-213ENST00000496037 MSH5O43196 834 aa19.67■□□□□ 0.74
SMARCAL1-213ENST00000496037 SMARCA4P51532 1647 aa19.65■□□□□ 0.74
SMARCAL1-213ENST00000496037 BAZ1AQ9NRL2 1556 aaPredicted RBP19.64■□□□□ 0.73
SMARCAL1-213ENST00000496037 OSCARQ8IYS5 282 aa19.56■□□□□ 0.72
SMARCAL1-213ENST00000496037 MRC2Q9UBG0 1479 aa19.55■□□□□ 0.72
SMARCAL1-213ENST00000496037 WDR62O43379 1518 aa19.52■□□□□ 0.72
SMARCAL1-213ENST00000496037 PEG3Q9GZU2 1588 aa19.45■□□□□ 0.7
SMARCAL1-213ENST00000496037 CADPSQ9ULU8 1353 aa19.41■□□□□ 0.7
SMARCAL1-213ENST00000496037 RIMBP3CA6NJZ7 1639 aa19.4■□□□□ 0.7
SMARCAL1-213ENST00000496037 RIMBP3BA6NNM3 1639 aa19.4■□□□□ 0.7
SMARCAL1-213ENST00000496037 RIMBP3Q9UFD9 1639 aa19.4■□□□□ 0.7
SMARCAL1-213ENST00000496037 CEP164Q9UPV0 1460 aa19.33■□□□□ 0.68
SMARCAL1-213ENST00000496037 ARHGEF11O15085 1522 aa19.27■□□□□ 0.68
SMARCAL1-213ENST00000496037 TRHP20396 242 aaPredicted RBP19.26■□□□□ 0.67
SMARCAL1-213ENST00000496037 FANCD2Q9BXW9 1451 aa19.21■□□□□ 0.67
SMARCAL1-213ENST00000496037 MROH2BQ7Z745 1585 aa19.2■□□□□ 0.66
SMARCAL1-213ENST00000496037 CYB5RLQ6IPT4 315 aa19.16■□□□□ 0.66
SMARCAL1-213ENST00000496037 URB2Q14146 1524 aaKnown RBP19.08■□□□□ 0.64
SMARCAL1-213ENST00000496037 CFTRP13569 1480 aa19.01■□□□□ 0.63
SMARCAL1-213ENST00000496037 ARAP1Q96P48 1450 aa19.01■□□□□ 0.63
SMARCAL1-213ENST00000496037 ZNF608Q9ULD9 1512 aaPredicted RBP18.97■□□□□ 0.63
SMARCAL1-213ENST00000496037 IFT140Q96RY7 1462 aa18.96■□□□□ 0.63
SMARCAL1-213ENST00000496037 WIZO95785 1651 aa18.93■□□□□ 0.62
SMARCAL1-213ENST00000496037 RSF1Q96T23 1441 aaPredicted RBP18.9■□□□□ 0.62
SMARCAL1-213ENST00000496037 EIF4G3O43432 1585 aaKnown RBP18.86■□□□□ 0.61
SMARCAL1-213ENST00000496037 CHD1O14646 1710 aa18.84■□□□□ 0.61
SMARCAL1-213ENST00000496037 FBLN2P98095 1184 aa18.79■□□□□ 0.6
SMARCAL1-213ENST00000496037 TOPBP1Q92547 1522 aa18.74■□□□□ 0.59
SMARCAL1-213ENST00000496037 PRDM2Q13029 1718 aa18.74■□□□□ 0.59
SMARCAL1-213ENST00000496037 AQRO60306 1485 aaKnown RBP eCLIP18.7■□□□□ 0.58
SMARCAL1-213ENST00000496037 TOP2AP11388 1531 aaKnown RBP18.68■□□□□ 0.58
SMARCAL1-213ENST00000496037 ABCC8Q09428 1581 aa18.68■□□□□ 0.58
SMARCAL1-213ENST00000496037 CLASP1Q7Z460 1538 aa18.62■□□□□ 0.57
SMARCAL1-213ENST00000496037 DNMBPQ6XZF7 1577 aa18.61■□□□□ 0.57
SMARCAL1-213ENST00000496037 TARBP1Q13395 1621 aaKnown RBP18.6■□□□□ 0.57
SMARCAL1-213ENST00000496037 SYNJ1O43426 1573 aa18.58■□□□□ 0.56
SMARCAL1-213ENST00000496037 ILDR1Q86SU0 546 aaPredicted RBP18.55■□□□□ 0.56
SMARCAL1-213ENST00000496037 SNAPC4Q5SXM2 1469 aa18.52■□□□□ 0.56
SMARCAL1-213ENST00000496037 CHMP7Q8WUX9 453 aaPredicted RBP18.51■□□□□ 0.55
SMARCAL1-213ENST00000496037 GAPVD1Q14C86 1478 aa18.51■□□□□ 0.55
SMARCAL1-213ENST00000496037 POLA1P09884 1462 aaPredicted RBP18.5■□□□□ 0.55
SMARCAL1-213ENST00000496037 SCAF1Q9H7N4 1312 aaKnown RBP18.47■□□□□ 0.55
SMARCAL1-213ENST00000496037 TDRD9Q8NDG6 1382 aaKnown RBP18.46■□□□□ 0.55
SMARCAL1-213ENST00000496037 MAGI1Q96QZ7 1491 aaPredicted RBP18.45■□□□□ 0.54
SMARCAL1-213ENST00000496037 CCDC88BA6NC98 1476 aa18.44■□□□□ 0.54
SMARCAL1-213ENST00000496037 RAD54L2Q9Y4B4 1467 aa18.43■□□□□ 0.54
SMARCAL1-213ENST00000496037 WDR97A6NE52 1622 aa18.42■□□□□ 0.54
SMARCAL1-213ENST00000496037 SOGA1O94964 1423 aa18.4■□□□□ 0.54
SMARCAL1-213ENST00000496037 SYNJ2O15056 1496 aa18.39■□□□□ 0.53
SMARCAL1-213ENST00000496037 PPP4R3CPQ6ZMV5 832 aa18.36■□□□□ 0.53
SMARCAL1-213ENST00000496037 GRIN2BQ13224 1484 aa18.35■□□□□ 0.53
SMARCAL1-213ENST00000496037 POTEDQ86YR6 584 aa18.33■□□□□ 0.52
SMARCAL1-213ENST00000496037 FGD5Q6ZNL6 1462 aa18.27■□□□□ 0.52
SMARCAL1-213ENST00000496037 MAPK8IP2Q13387 824 aaPredicted RBP18.27■□□□□ 0.52
SMARCAL1-213ENST00000496037 KIF13AQ9H1H9 1805 aa18.26■□□□□ 0.51
SMARCAL1-213ENST00000496037 ERCC6L2Q5T890 1561 aa18.24■□□□□ 0.51
SMARCAL1-213ENST00000496037 KDM4FA0A1W2PPD8 638 aa18.23■□□□□ 0.51
SMARCAL1-213ENST00000496037 PBRM1Q86U86 1689 aa18.2■□□□□ 0.5
SMARCAL1-213ENST00000496037 CEP170Q5SW79 1584 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms