RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	NISCH	Q9Y2I1	1504 aa		17.88	■□□□□ 0.45
VPS52-221	ENST00000495755	CCDC180	Q9P1Z9	1646 aa		15.94	■□□□□ 0.14
VPS52-221	ENST00000495755	ABCC9	O60706	1549 aa		15.81	■□□□□ 0.12
VPS52-221	ENST00000495755	RB1CC1	Q8TDY2	1594 aa		15.11	■□□□□ 0.01
VPS52-221	ENST00000495755	NACAD	O15069	1562 aa		15.06	■□□□□ 0
VPS52-221	ENST00000495755	DCAF8L2	P0C7V8	631 aa		15.02	■□□□□ -0
VPS52-221	ENST00000495755	MYO15B	Q96JP2	1530 aa		14.92	□□□□□ -0.02
VPS52-221	ENST00000495755	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.84	□□□□□ -0.03
VPS52-221	ENST00000495755	DCAF1	Q9Y4B6	1507 aa		14.79	□□□□□ -0.04
VPS52-221	ENST00000495755	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.77	□□□□□ -0.05
VPS52-221	ENST00000495755	DNAJC5B	Q9UF47	199 aa		14.75	□□□□□ -0.05
VPS52-221	ENST00000495755	UNC13A	Q9UPW8	1703 aa		14.74	□□□□□ -0.05
VPS52-221	ENST00000495755	BICRA	Q9NZM4	1560 aa		14.68	□□□□□ -0.06
VPS52-221	ENST00000495755	SCRIB	Q14160	1630 aa		14.53	□□□□□ -0.08
VPS52-221	ENST00000495755	SHROOM4	Q9ULL8	1493 aa		14.5	□□□□□ -0.09
VPS52-221	ENST00000495755	EIF4G1	Q04637	1599 aa	Known RBP	14.3	□□□□□ -0.12
VPS52-221	ENST00000495755	CC2D2A	Q9P2K1	1620 aa		14.28	□□□□□ -0.12
VPS52-221	ENST00000495755	CECR2	Q9BXF3	1484 aa		14.24	□□□□□ -0.13
VPS52-221	ENST00000495755	NCAPD3	P42695	1498 aa		13.93	□□□□□ -0.18
VPS52-221	ENST00000495755	ATAD2B	Q9ULI0	1458 aa		13.89	□□□□□ -0.19
VPS52-221	ENST00000495755	SMARCA4	P51532	1647 aa		13.89	□□□□□ -0.19
VPS52-221	ENST00000495755	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.85	□□□□□ -0.19
VPS52-221	ENST00000495755	SMARCA2	P51531	1590 aa		13.84	□□□□□ -0.19
VPS52-221	ENST00000495755	HMGXB3	Q12766	1538 aa		13.8	□□□□□ -0.2
VPS52-221	ENST00000495755	MROH2B	Q7Z745	1585 aa		13.78	□□□□□ -0.2
VPS52-221	ENST00000495755	PEG3	Q9GZU2	1588 aa		13.78	□□□□□ -0.2
VPS52-221	ENST00000495755	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.74	□□□□□ -0.21
VPS52-221	ENST00000495755	NES	P48681	1621 aa		13.63	□□□□□ -0.23
VPS52-221	ENST00000495755	ERCC6	Q03468	1493 aa		13.62	□□□□□ -0.23
VPS52-221	ENST00000495755	WIZ	O95785	1651 aa		13.59	□□□□□ -0.23
VPS52-221	ENST00000495755	CUX2	O14529	1486 aa		13.57	□□□□□ -0.24
VPS52-221	ENST00000495755	RSF1	Q96T23	1441 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS52-221	ENST00000495755	LAMC3	Q9Y6N6	1575 aa		13.55	□□□□□ -0.24
VPS52-221	ENST00000495755	CADPS	Q9ULU8	1353 aa		13.51	□□□□□ -0.25
VPS52-221	ENST00000495755	PDS5B	Q9NTI5	1447 aa		13.48	□□□□□ -0.25
VPS52-221	ENST00000495755	TOP2A	P11388	1531 aa	Known RBP	13.44	□□□□□ -0.26
VPS52-221	ENST00000495755	THOC2	Q8NI27	1593 aa	Known RBP	13.44	□□□□□ -0.26
VPS52-221	ENST00000495755	DNAJC5	Q9H3Z4	198 aa		13.43	□□□□□ -0.26
VPS52-221	ENST00000495755	KIF21A	Q7Z4S6	1674 aa		13.42	□□□□□ -0.26
VPS52-221	ENST00000495755	CFTR	P13569	1480 aa		13.38	□□□□□ -0.27
VPS52-221	ENST00000495755	MRC2	Q9UBG0	1479 aa		13.35	□□□□□ -0.27
VPS52-221	ENST00000495755	FANCD2	Q9BXW9	1451 aa		13.33	□□□□□ -0.28
VPS52-221	ENST00000495755	CEP164	Q9UPV0	1460 aa		13.32	□□□□□ -0.28
VPS52-221	ENST00000495755	CCDC88B	A6NC98	1476 aa		13.31	□□□□□ -0.28
VPS52-221	ENST00000495755	WDR62	O43379	1518 aa		13.31	□□□□□ -0.28
VPS52-221	ENST00000495755	URB2	Q14146	1524 aa	Known RBP	13.22	□□□□□ -0.29
VPS52-221	ENST00000495755	PRDM2	Q13029	1718 aa		13.18	□□□□□ -0.3
VPS52-221	ENST00000495755	TOPBP1	Q92547	1522 aa		13.09	□□□□□ -0.31
VPS52-221	ENST00000495755	ABCC8	Q09428	1581 aa		13.09	□□□□□ -0.31
VPS52-221	ENST00000495755	IFT140	Q96RY7	1462 aa		13.07	□□□□□ -0.32
VPS52-221	ENST00000495755	SUPT5H	O00267	1087 aa	Known RBP	13.05	□□□□□ -0.32
VPS52-221	ENST00000495755	DNMBP	Q6XZF7	1577 aa		13.05	□□□□□ -0.32
VPS52-221	ENST00000495755	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.03	□□□□□ -0.32
VPS52-221	ENST00000495755	OSCAR	Q8IYS5	282 aa		13	□□□□□ -0.33
VPS52-221	ENST00000495755	POLA1	P09884	1462 aa	Predicted RBP	12.97	□□□□□ -0.33
VPS52-221	ENST00000495755	TARBP1	Q13395	1621 aa	Known RBP	12.97	□□□□□ -0.33
VPS52-221	ENST00000495755	AQR	O60306	1485 aa	Known RBP eCLIP	12.94	□□□□□ -0.34	1e-6	■■■■□ 22.9
VPS52-221	ENST00000495755	SOGA1	O94964	1423 aa		12.93	□□□□□ -0.34
VPS52-221	ENST00000495755	EIF4G3	O43432	1585 aa	Known RBP	12.93	□□□□□ -0.34
VPS52-221	ENST00000495755	CUX1	P39880	1505 aa		12.93	□□□□□ -0.34
VPS52-221	ENST00000495755	RAD54L2	Q9Y4B4	1467 aa		12.92	□□□□□ -0.34
VPS52-221	ENST00000495755	FGD5	Q6ZNL6	1462 aa		12.91	□□□□□ -0.34
VPS52-221	ENST00000495755	TDRD9	Q8NDG6	1382 aa	Known RBP	12.89	□□□□□ -0.35
VPS52-221	ENST00000495755	TRIM41	Q8WV44	630 aa		12.86	□□□□□ -0.35
VPS52-221	ENST00000495755	WDR97	A6NE52	1622 aa		12.84	□□□□□ -0.35
VPS52-221	ENST00000495755	FBLN2	P98095	1184 aa		12.8	□□□□□ -0.36
VPS52-221	ENST00000495755	CHD1	O14646	1710 aa		12.79	□□□□□ -0.36
VPS52-221	ENST00000495755	GRIN2B	Q13224	1484 aa		12.79	□□□□□ -0.36
VPS52-221	ENST00000495755	SNAPC4	Q5SXM2	1469 aa		12.79	□□□□□ -0.36
VPS52-221	ENST00000495755	ABCA10	Q8WWZ4	1543 aa		12.78	□□□□□ -0.36
VPS52-221	ENST00000495755	RIMBP3C	A6NJZ7	1639 aa		12.77	□□□□□ -0.36
VPS52-221	ENST00000495755	RIMBP3B	A6NNM3	1639 aa		12.77	□□□□□ -0.36
VPS52-221	ENST00000495755	RIMBP3	Q9UFD9	1639 aa		12.77	□□□□□ -0.36
VPS52-221	ENST00000495755	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.77	□□□□□ -0.37
VPS52-221	ENST00000495755	GAPVD1	Q14C86	1478 aa		12.77	□□□□□ -0.37
VPS52-221	ENST00000495755	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.77	□□□□□ -0.37
VPS52-221	ENST00000495755	ARHGEF11	O15085	1522 aa		12.76	□□□□□ -0.37
VPS52-221	ENST00000495755	TOP2B	Q02880	1626 aa		12.75	□□□□□ -0.37
VPS52-221	ENST00000495755	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.75	□□□□□ -0.37
VPS52-221	ENST00000495755	BIVM-ERCC5	R4GMW8	1640 aa		12.74	□□□□□ -0.37
VPS52-221	ENST00000495755	SYNJ1	O43426	1573 aa		12.74	□□□□□ -0.37
VPS52-221	ENST00000495755	ABCA5	Q8WWZ7	1642 aa		12.73	□□□□□ -0.37
VPS52-221	ENST00000495755	SYNJ2	O15056	1496 aa		12.72	□□□□□ -0.37
VPS52-221	ENST00000495755	PBRM1	Q86U86	1689 aa		12.7	□□□□□ -0.38
VPS52-221	ENST00000495755	CLASP1	Q7Z460	1538 aa		12.69	□□□□□ -0.38
VPS52-221	ENST00000495755	CYB5RL	Q6IPT4	315 aa		12.68	□□□□□ -0.38
VPS52-221	ENST00000495755	ARAP1	Q96P48	1450 aa		12.65	□□□□□ -0.38
VPS52-221	ENST00000495755	ADAMTS12	P58397	1594 aa		12.62	□□□□□ -0.39
VPS52-221	ENST00000495755	GRIN2A	Q12879	1464 aa		12.62	□□□□□ -0.39
VPS52-221	ENST00000495755	ERICH3	Q5RHP9	1530 aa		12.62	□□□□□ -0.39
VPS52-221	ENST00000495755	FHAD1	B1AJZ9	1412 aa		12.62	□□□□□ -0.39
VPS52-221	ENST00000495755	NUP160	Q12769	1436 aa		12.59	□□□□□ -0.39
VPS52-221	ENST00000495755	CEP170	Q5SW79	1584 aa		12.56	□□□□□ -0.4
VPS52-221	ENST00000495755	IGF1R	P08069	1367 aa		12.53	□□□□□ -0.4
VPS52-221	ENST00000495755	KIF27	Q86VH2	1401 aa		12.53	□□□□□ -0.4
VPS52-221	ENST00000495755	ERCC6L2	Q5T890	1561 aa		12.5	□□□□□ -0.41
VPS52-221	ENST00000495755	SHROOM2	Q13796	1616 aa		12.49	□□□□□ -0.41
VPS52-221	ENST00000495755	TRH	P20396	242 aa	Predicted RBP	12.47	□□□□□ -0.41
VPS52-221	ENST00000495755	JPH4	Q96JJ6	628 aa		12.47	□□□□□ -0.41
VPS52-221	ENST00000495755	PRG4	Q92954	1404 aa	Predicted RBP	12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms