RNA–Protein interactions for RNA: ENST00000495465.6

RAPGEF3-214, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 3

Gene RAPGEF3, Length 910 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-214ENST00000495465 NISCHQ9Y2I1 1504 aa36.13■■■■□ 3.38
RAPGEF3-214ENST00000495465 CCDC180Q9P1Z9 1646 aa32.19■■■□□ 2.74
RAPGEF3-214ENST00000495465 ABCC9O60706 1549 aa32.15■■■□□ 2.74
RAPGEF3-214ENST00000495465 RB1CC1Q8TDY2 1594 aa30.62■■■□□ 2.49
RAPGEF3-214ENST00000495465 DCAF8L2P0C7V8 631 aa30.61■■■□□ 2.49
RAPGEF3-214ENST00000495465 NACADO15069 1562 aa30.45■■■□□ 2.47
RAPGEF3-214ENST00000495465 MYO15BQ96JP2 1530 aa30.08■■■□□ 2.41
RAPGEF3-214ENST00000495465 PABPN1Q86U42 306 aaKnown RBP eCLIP30.06■■■□□ 2.4
RAPGEF3-214ENST00000495465 DNAJC5BQ9UF47 199 aa30■■■□□ 2.39
RAPGEF3-214ENST00000495465 ZCCHC6Q5VYS8 1495 aaKnown RBP29.98■■■□□ 2.39
RAPGEF3-214ENST00000495465 UNC13AQ9UPW8 1703 aa29.82■■■□□ 2.36
RAPGEF3-214ENST00000495465 DCAF1Q9Y4B6 1507 aa29.81■■■□□ 2.36
RAPGEF3-214ENST00000495465 BICRAQ9NZM4 1560 aa29.71■■■□□ 2.35
RAPGEF3-214ENST00000495465 SCRIBQ14160 1630 aa29.47■■■□□ 2.31
RAPGEF3-214ENST00000495465 SHROOM4Q9ULL8 1493 aa29.28■■■□□ 2.28
RAPGEF3-214ENST00000495465 CC2D2AQ9P2K1 1620 aa28.98■■■□□ 2.23
RAPGEF3-214ENST00000495465 EIF4G1Q04637 1599 aaKnown RBP28.97■■■□□ 2.23
RAPGEF3-214ENST00000495465 CECR2Q9BXF3 1484 aa28.91■■■□□ 2.22
RAPGEF3-214ENST00000495465 NCAPD3P42695 1498 aa28.16■■■□□ 2.1
RAPGEF3-214ENST00000495465 ATAD2BQ9ULI0 1458 aa28.13■■■□□ 2.09
RAPGEF3-214ENST00000495465 SMARCA4P51532 1647 aa28.1■■■□□ 2.09
RAPGEF3-214ENST00000495465 SMARCA2P51531 1590 aa28.02■■■□□ 2.08
RAPGEF3-214ENST00000495465 BAZ1AQ9NRL2 1556 aaPredicted RBP28.01■■■□□ 2.07
RAPGEF3-214ENST00000495465 HMGXB3Q12766 1538 aa27.92■■■□□ 2.06
RAPGEF3-214ENST00000495465 MROH2BQ7Z745 1585 aa27.87■■■□□ 2.05
RAPGEF3-214ENST00000495465 BAZ1BQ9UIG0 1483 aaKnown RBP27.87■■■□□ 2.05
RAPGEF3-214ENST00000495465 PEG3Q9GZU2 1588 aa27.78■■■□□ 2.04
RAPGEF3-214ENST00000495465 ERCC6Q03468 1493 aa27.74■■■□□ 2.03
RAPGEF3-214ENST00000495465 NESP48681 1621 aa27.67■■■□□ 2.02
RAPGEF3-214ENST00000495465 CUX2O14529 1486 aa27.53■■■□□ 2
RAPGEF3-214ENST00000495465 WIZO95785 1651 aa27.51■■□□□ 1.99
RAPGEF3-214ENST00000495465 LAMC3Q9Y6N6 1575 aa27.43■■□□□ 1.98
RAPGEF3-214ENST00000495465 RSF1Q96T23 1441 aaPredicted RBP27.41■■□□□ 1.98
RAPGEF3-214ENST00000495465 CADPSQ9ULU8 1353 aa27.36■■□□□ 1.97
RAPGEF3-214ENST00000495465 PDS5BQ9NTI5 1447 aa27.35■■□□□ 1.97
RAPGEF3-214ENST00000495465 DNAJC5Q9H3Z4 198 aa27.34■■□□□ 1.97
RAPGEF3-214ENST00000495465 THOC2Q8NI27 1593 aaKnown RBP27.24■■□□□ 1.95
RAPGEF3-214ENST00000495465 KIF21AQ7Z4S6 1674 aa27.22■■□□□ 1.95
RAPGEF3-214ENST00000495465 TOP2AP11388 1531 aaKnown RBP27.17■■□□□ 1.94
RAPGEF3-214ENST00000495465 MRC2Q9UBG0 1479 aa27.07■■□□□ 1.92
RAPGEF3-214ENST00000495465 CFTRP13569 1480 aa27.06■■□□□ 1.92
RAPGEF3-214ENST00000495465 FANCD2Q9BXW9 1451 aa27.03■■□□□ 1.92
RAPGEF3-214ENST00000495465 CEP164Q9UPV0 1460 aa27.02■■□□□ 1.92
RAPGEF3-214ENST00000495465 WDR62O43379 1518 aa26.95■■□□□ 1.9
RAPGEF3-214ENST00000495465 CCDC88BA6NC98 1476 aa26.93■■□□□ 1.9
RAPGEF3-214ENST00000495465 URB2Q14146 1524 aaKnown RBP26.78■■□□□ 1.88
RAPGEF3-214ENST00000495465 PRDM2Q13029 1718 aa26.64■■□□□ 1.85
RAPGEF3-214ENST00000495465 TOPBP1Q92547 1522 aa26.53■■□□□ 1.84
RAPGEF3-214ENST00000495465 SUPT5HO00267 1087 aaKnown RBP26.52■■□□□ 1.84
RAPGEF3-214ENST00000495465 ABCC8Q09428 1581 aa26.47■■□□□ 1.83
RAPGEF3-214ENST00000495465 IFT140Q96RY7 1462 aa26.47■■□□□ 1.83
RAPGEF3-214ENST00000495465 OSCARQ8IYS5 282 aa26.43■■□□□ 1.82
RAPGEF3-214ENST00000495465 ZNF608Q9ULD9 1512 aaPredicted RBP26.43■■□□□ 1.82
RAPGEF3-214ENST00000495465 DNMBPQ6XZF7 1577 aa26.41■■□□□ 1.82
RAPGEF3-214ENST00000495465 TRIM41Q8WV44 630 aa26.33■■□□□ 1.81
RAPGEF3-214ENST00000495465 POLA1P09884 1462 aaPredicted RBP26.28■■□□□ 1.8
RAPGEF3-214ENST00000495465 AQRO60306 1485 aaKnown RBP eCLIP26.26■■□□□ 1.79
RAPGEF3-214ENST00000495465 TARBP1Q13395 1621 aaKnown RBP26.23■■□□□ 1.79
RAPGEF3-214ENST00000495465 RAD54L2Q9Y4B4 1467 aa26.23■■□□□ 1.79
RAPGEF3-214ENST00000495465 SOGA1O94964 1423 aa26.22■■□□□ 1.79
RAPGEF3-214ENST00000495465 EIF4G3O43432 1585 aaKnown RBP26.21■■□□□ 1.79
RAPGEF3-214ENST00000495465 CUX1P39880 1505 aa26.17■■□□□ 1.78
RAPGEF3-214ENST00000495465 TDRD9Q8NDG6 1382 aaKnown RBP26.16■■□□□ 1.78
RAPGEF3-214ENST00000495465 FGD5Q6ZNL6 1462 aa26.15■■□□□ 1.78
RAPGEF3-214ENST00000495465 FBLN2P98095 1184 aa26.13■■□□□ 1.77
RAPGEF3-214ENST00000495465 SNAPC4Q5SXM2 1469 aa25.96■■□□□ 1.75
RAPGEF3-214ENST00000495465 CHD1O14646 1710 aa25.94■■□□□ 1.74
RAPGEF3-214ENST00000495465 RIMBP3CA6NJZ7 1639 aa25.94■■□□□ 1.74
RAPGEF3-214ENST00000495465 RIMBP3BA6NNM3 1639 aa25.94■■□□□ 1.74
RAPGEF3-214ENST00000495465 RIMBP3Q9UFD9 1639 aa25.94■■□□□ 1.74
RAPGEF3-214ENST00000495465 CHMP7Q8WUX9 453 aaPredicted RBP25.93■■□□□ 1.74
RAPGEF3-214ENST00000495465 WDR97A6NE52 1622 aa25.92■■□□□ 1.74
RAPGEF3-214ENST00000495465 GRIN2BQ13224 1484 aa25.91■■□□□ 1.74
RAPGEF3-214ENST00000495465 ARHGEF11O15085 1522 aa25.91■■□□□ 1.74
RAPGEF3-214ENST00000495465 GAPVD1Q14C86 1478 aa25.87■■□□□ 1.73
RAPGEF3-214ENST00000495465 MAGI1Q96QZ7 1491 aaPredicted RBP25.86■■□□□ 1.73
RAPGEF3-214ENST00000495465 ABCA10Q8WWZ4 1543 aa25.85■■□□□ 1.73
RAPGEF3-214ENST00000495465 WRNQ14191 1432 aaPredicted RBP eCLIP25.85■■□□□ 1.73
RAPGEF3-214ENST00000495465 CYB5RLQ6IPT4 315 aa25.84■■□□□ 1.73
RAPGEF3-214ENST00000495465 SYNJ2O15056 1496 aa25.79■■□□□ 1.72
RAPGEF3-214ENST00000495465 SYNJ1O43426 1573 aa25.77■■□□□ 1.72
RAPGEF3-214ENST00000495465 TOP2BQ02880 1626 aa25.77■■□□□ 1.72
RAPGEF3-214ENST00000495465 ABCA5Q8WWZ7 1642 aa25.73■■□□□ 1.71
RAPGEF3-214ENST00000495465 BIVM-ERCC5R4GMW8 1640 aa25.73■■□□□ 1.71
RAPGEF3-214ENST00000495465 PBRM1Q86U86 1689 aa25.72■■□□□ 1.71
RAPGEF3-214ENST00000495465 CLASP1Q7Z460 1538 aa25.69■■□□□ 1.7
RAPGEF3-214ENST00000495465 ARAP1Q96P48 1450 aa25.69■■□□□ 1.7
RAPGEF3-214ENST00000495465 GRIN2AQ12879 1464 aa25.58■■□□□ 1.69
RAPGEF3-214ENST00000495465 FHAD1B1AJZ9 1412 aa25.55■■□□□ 1.68
RAPGEF3-214ENST00000495465 ADAMTS12P58397 1594 aa25.54■■□□□ 1.68
RAPGEF3-214ENST00000495465 ERICH3Q5RHP9 1530 aa25.51■■□□□ 1.67
RAPGEF3-214ENST00000495465 TRHP20396 242 aaPredicted RBP25.49■■□□□ 1.67
RAPGEF3-214ENST00000495465 NUP160Q12769 1436 aa25.47■■□□□ 1.67
RAPGEF3-214ENST00000495465 CEP170Q5SW79 1584 aa25.44■■□□□ 1.66
RAPGEF3-214ENST00000495465 ERCC6L2Q5T890 1561 aa25.36■■□□□ 1.65
RAPGEF3-214ENST00000495465 KIF27Q86VH2 1401 aa25.36■■□□□ 1.65
RAPGEF3-214ENST00000495465 IGF1RP08069 1367 aa25.34■■□□□ 1.65
RAPGEF3-214ENST00000495465 JPH4Q96JJ6 628 aa25.31■■□□□ 1.64
RAPGEF3-214ENST00000495465 PRG4Q92954 1404 aaPredicted RBP25.27■■□□□ 1.64
RAPGEF3-214ENST00000495465 SHROOM2Q13796 1616 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms