RNA–Protein interactions for RNA: ENST00000495400.1

PTPN18-216, Transcript of protein tyrosine phosphatase, non-receptor type 18, humanhuman

TSL 4

Gene PTPN18, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN18-216ENST00000495400 NISCHQ9Y2I1 1504 aa36.98■■■■□ 3.51
PTPN18-216ENST00000495400 CCDC180Q9P1Z9 1646 aa33.2■■■□□ 2.91
PTPN18-216ENST00000495400 ABCC9O60706 1549 aa33.17■■■□□ 2.9
PTPN18-216ENST00000495400 RB1CC1Q8TDY2 1594 aa31.6■■■□□ 2.65
PTPN18-216ENST00000495400 NACADO15069 1562 aa31.38■■■□□ 2.61
PTPN18-216ENST00000495400 DCAF8L2P0C7V8 631 aa31.22■■■□□ 2.59
PTPN18-216ENST00000495400 DNAJC5BQ9UF47 199 aa31.12■■■□□ 2.57
PTPN18-216ENST00000495400 MYO15BQ96JP2 1530 aa30.95■■■□□ 2.55
PTPN18-216ENST00000495400 UNC13AQ9UPW8 1703 aa30.91■■■□□ 2.54
PTPN18-216ENST00000495400 PABPN1Q86U42 306 aaKnown RBP eCLIP30.88■■■□□ 2.53
PTPN18-216ENST00000495400 BICRAQ9NZM4 1560 aa30.66■■■□□ 2.5
PTPN18-216ENST00000495400 ZCCHC6Q5VYS8 1495 aaKnown RBP30.63■■■□□ 2.49
PTPN18-216ENST00000495400 DCAF1Q9Y4B6 1507 aa30.56■■■□□ 2.48
PTPN18-216ENST00000495400 SHROOM4Q9ULL8 1493 aa30.26■■■□□ 2.44
PTPN18-216ENST00000495400 SCRIBQ14160 1630 aa30.23■■■□□ 2.43
PTPN18-216ENST00000495400 CC2D2AQ9P2K1 1620 aa29.98■■■□□ 2.39
PTPN18-216ENST00000495400 EIF4G1Q04637 1599 aaKnown RBP29.91■■■□□ 2.38
PTPN18-216ENST00000495400 CECR2Q9BXF3 1484 aa29.88■■■□□ 2.37
PTPN18-216ENST00000495400 NCAPD3P42695 1498 aa28.97■■■□□ 2.23
PTPN18-216ENST00000495400 ATAD2BQ9ULI0 1458 aa28.87■■■□□ 2.21
PTPN18-216ENST00000495400 SMARCA4P51532 1647 aa28.85■■■□□ 2.21
PTPN18-216ENST00000495400 SMARCA2P51531 1590 aa28.8■■■□□ 2.2
PTPN18-216ENST00000495400 HMGXB3Q12766 1538 aa28.75■■■□□ 2.19
PTPN18-216ENST00000495400 BAZ1AQ9NRL2 1556 aaPredicted RBP28.71■■■□□ 2.19
PTPN18-216ENST00000495400 ERCC6Q03468 1493 aa28.65■■■□□ 2.18
PTPN18-216ENST00000495400 CUX2O14529 1486 aa28.6■■■□□ 2.17
PTPN18-216ENST00000495400 DNAJC5Q9H3Z4 198 aa28.6■■■□□ 2.17
PTPN18-216ENST00000495400 BAZ1BQ9UIG0 1483 aaKnown RBP28.59■■■□□ 2.17
PTPN18-216ENST00000495400 PEG3Q9GZU2 1588 aa28.57■■■□□ 2.16
PTPN18-216ENST00000495400 NESP48681 1621 aa28.5■■■□□ 2.15
PTPN18-216ENST00000495400 MROH2BQ7Z745 1585 aa28.49■■■□□ 2.15
PTPN18-216ENST00000495400 LAMC3Q9Y6N6 1575 aa28.33■■■□□ 2.12
PTPN18-216ENST00000495400 THOC2Q8NI27 1593 aaKnown RBP28.21■■■□□ 2.11
PTPN18-216ENST00000495400 PDS5BQ9NTI5 1447 aa28.16■■■□□ 2.1
PTPN18-216ENST00000495400 WIZO95785 1651 aa28.16■■■□□ 2.1
PTPN18-216ENST00000495400 KIF21AQ7Z4S6 1674 aa28.16■■■□□ 2.1
PTPN18-216ENST00000495400 CADPSQ9ULU8 1353 aa28.09■■■□□ 2.09
PTPN18-216ENST00000495400 MRC2Q9UBG0 1479 aa27.9■■■□□ 2.06
PTPN18-216ENST00000495400 RSF1Q96T23 1441 aaPredicted RBP27.9■■■□□ 2.06
PTPN18-216ENST00000495400 WDR62O43379 1518 aa27.82■■■□□ 2.04
PTPN18-216ENST00000495400 TOP2AP11388 1531 aaKnown RBP27.79■■■□□ 2.04
PTPN18-216ENST00000495400 CEP164Q9UPV0 1460 aa27.79■■■□□ 2.04
PTPN18-216ENST00000495400 CFTRP13569 1480 aa27.76■■■□□ 2.03
PTPN18-216ENST00000495400 FANCD2Q9BXW9 1451 aa27.76■■■□□ 2.03
PTPN18-216ENST00000495400 URB2Q14146 1524 aaKnown RBP27.53■■■□□ 2
PTPN18-216ENST00000495400 PRDM2Q13029 1718 aa27.53■■■□□ 2
PTPN18-216ENST00000495400 CCDC88BA6NC98 1476 aa27.49■■□□□ 1.99
PTPN18-216ENST00000495400 TRIM41Q8WV44 630 aa27.33■■□□□ 1.97
PTPN18-216ENST00000495400 OSCARQ8IYS5 282 aa27.32■■□□□ 1.96
PTPN18-216ENST00000495400 IFT140Q96RY7 1462 aa27.25■■□□□ 1.95
PTPN18-216ENST00000495400 TOPBP1Q92547 1522 aa27.24■■□□□ 1.95
PTPN18-216ENST00000495400 ABCC8Q09428 1581 aa27.2■■□□□ 1.94
PTPN18-216ENST00000495400 ZNF608Q9ULD9 1512 aaPredicted RBP27.18■■□□□ 1.94
PTPN18-216ENST00000495400 DNMBPQ6XZF7 1577 aa27.14■■□□□ 1.94
PTPN18-216ENST00000495400 EIF4G3O43432 1585 aaKnown RBP27.04■■□□□ 1.92
PTPN18-216ENST00000495400 TARBP1Q13395 1621 aaKnown RBP27■■□□□ 1.91
PTPN18-216ENST00000495400 POLA1P09884 1462 aaPredicted RBP26.95■■□□□ 1.91
PTPN18-216ENST00000495400 RIMBP3CA6NJZ7 1639 aa26.95■■□□□ 1.91
PTPN18-216ENST00000495400 RIMBP3BA6NNM3 1639 aa26.95■■□□□ 1.91
PTPN18-216ENST00000495400 RIMBP3Q9UFD9 1639 aa26.95■■□□□ 1.91
PTPN18-216ENST00000495400 AQRO60306 1485 aaKnown RBP eCLIP26.94■■□□□ 1.9
PTPN18-216ENST00000495400 CHD1O14646 1710 aa26.87■■□□□ 1.89
PTPN18-216ENST00000495400 RAD54L2Q9Y4B4 1467 aa26.86■■□□□ 1.89
PTPN18-216ENST00000495400 ARHGEF11O15085 1522 aa26.85■■□□□ 1.89
PTPN18-216ENST00000495400 SOGA1O94964 1423 aa26.84■■□□□ 1.89
PTPN18-216ENST00000495400 FGD5Q6ZNL6 1462 aa26.79■■□□□ 1.88
PTPN18-216ENST00000495400 FBLN2P98095 1184 aa26.78■■□□□ 1.88
PTPN18-216ENST00000495400 TDRD9Q8NDG6 1382 aaKnown RBP26.78■■□□□ 1.88
PTPN18-216ENST00000495400 CUX1P39880 1505 aa26.76■■□□□ 1.87
PTPN18-216ENST00000495400 WDR97A6NE52 1622 aa26.74■■□□□ 1.87
PTPN18-216ENST00000495400 SUPT5HO00267 1087 aaKnown RBP26.68■■□□□ 1.86
PTPN18-216ENST00000495400 SNAPC4Q5SXM2 1469 aa26.67■■□□□ 1.86
PTPN18-216ENST00000495400 CYB5RLQ6IPT4 315 aa26.66■■□□□ 1.86
PTPN18-216ENST00000495400 GRIN2BQ13224 1484 aa26.61■■□□□ 1.85
PTPN18-216ENST00000495400 MAGI1Q96QZ7 1491 aaPredicted RBP26.61■■□□□ 1.85
PTPN18-216ENST00000495400 CHMP7Q8WUX9 453 aaPredicted RBP26.59■■□□□ 1.85
PTPN18-216ENST00000495400 ARAP1Q96P48 1450 aa26.58■■□□□ 1.85
PTPN18-216ENST00000495400 CLASP1Q7Z460 1538 aa26.54■■□□□ 1.84
PTPN18-216ENST00000495400 SYNJ1O43426 1573 aa26.54■■□□□ 1.84
PTPN18-216ENST00000495400 SYNJ2O15056 1496 aa26.52■■□□□ 1.84
PTPN18-216ENST00000495400 PBRM1Q86U86 1689 aa26.52■■□□□ 1.84
PTPN18-216ENST00000495400 GAPVD1Q14C86 1478 aa26.51■■□□□ 1.83
PTPN18-216ENST00000495400 ABCA10Q8WWZ4 1543 aa26.49■■□□□ 1.83
PTPN18-216ENST00000495400 ABCA5Q8WWZ7 1642 aa26.44■■□□□ 1.82
PTPN18-216ENST00000495400 WRNQ14191 1432 aaPredicted RBP eCLIP26.39■■□□□ 1.81
PTPN18-216ENST00000495400 TRHP20396 242 aaPredicted RBP26.37■■□□□ 1.81
PTPN18-216ENST00000495400 TOP2BQ02880 1626 aa26.36■■□□□ 1.81
PTPN18-216ENST00000495400 BIVM-ERCC5R4GMW8 1640 aa26.36■■□□□ 1.81
PTPN18-216ENST00000495400 GRIN2AQ12879 1464 aa26.25■■□□□ 1.79
PTPN18-216ENST00000495400 ADAMTS12P58397 1594 aa26.24■■□□□ 1.79
PTPN18-216ENST00000495400 FHAD1B1AJZ9 1412 aa26.18■■□□□ 1.78
PTPN18-216ENST00000495400 NUP160Q12769 1436 aa26.17■■□□□ 1.78
PTPN18-216ENST00000495400 ERICH3Q5RHP9 1530 aa26.17■■□□□ 1.78
PTPN18-216ENST00000495400 CEP170Q5SW79 1584 aa26.16■■□□□ 1.78
PTPN18-216ENST00000495400 ERCC6L2Q5T890 1561 aa26.12■■□□□ 1.77
PTPN18-216ENST00000495400 SHROOM2Q13796 1616 aa26.06■■□□□ 1.76
PTPN18-216ENST00000495400 JPH4Q96JJ6 628 aa25.93■■□□□ 1.74
PTPN18-216ENST00000495400 PRG4Q92954 1404 aaPredicted RBP25.93■■□□□ 1.74
PTPN18-216ENST00000495400 RUSC2Q8N2Y8 1516 aa25.87■■□□□ 1.73
PTPN18-216ENST00000495400 KIF27Q86VH2 1401 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 183.2 ms