RNA–Protein interactions for RNA: ENST00000495172.1

GARNL3-219, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 4

Gene GARNL3, Length 737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-219ENST00000495172 NISCHQ9Y2I1 1504 aa23.71■■□□□ 1.39
GARNL3-219ENST00000495172 ABCC9O60706 1549 aa22.93■■□□□ 1.26
GARNL3-219ENST00000495172 DNAJC5BQ9UF47 199 aa22.57■■□□□ 1.2
GARNL3-219ENST00000495172 CCDC180Q9P1Z9 1646 aa21.64■■□□□ 1.05
GARNL3-219ENST00000495172 DNAJC5Q9H3Z4 198 aa21.29■■□□□ 1
GARNL3-219ENST00000495172 PABPN1Q86U42 306 aaKnown RBP eCLIP21.24■□□□□ 0.99
GARNL3-219ENST00000495172 RB1CC1Q8TDY2 1594 aa21.14■□□□□ 0.98
GARNL3-219ENST00000495172 UNC13AQ9UPW8 1703 aa20.85■□□□□ 0.93
GARNL3-219ENST00000495172 BICRAQ9NZM4 1560 aa20.72■□□□□ 0.91
GARNL3-219ENST00000495172 NACADO15069 1562 aa20.7■□□□□ 0.9
GARNL3-219ENST00000495172 CECR2Q9BXF3 1484 aa20.68■□□□□ 0.9
GARNL3-219ENST00000495172 DCAF8L2P0C7V8 631 aa20.66■□□□□ 0.9
GARNL3-219ENST00000495172 CC2D2AQ9P2K1 1620 aa20.59■□□□□ 0.89
GARNL3-219ENST00000495172 EIF4G1Q04637 1599 aaKnown RBP20.24■□□□□ 0.83
GARNL3-219ENST00000495172 AEBP2Q6ZN18 517 aaPredicted RBP20.16■□□□□ 0.82
GARNL3-219ENST00000495172 TRIM41Q8WV44 630 aa20.09■□□□□ 0.81
GARNL3-219ENST00000495172 SHROOM4Q9ULL8 1493 aa19.99■□□□□ 0.79
GARNL3-219ENST00000495172 CUX2O14529 1486 aa19.98■□□□□ 0.79
GARNL3-219ENST00000495172 MYO15BQ96JP2 1530 aa19.94■□□□□ 0.78
GARNL3-219ENST00000495172 SCRIBQ14160 1630 aa19.88■□□□□ 0.77
GARNL3-219ENST00000495172 ERCC6Q03468 1493 aa19.77■□□□□ 0.76
GARNL3-219ENST00000495172 CHIC1Q5VXU3 224 aa19.58■□□□□ 0.72
GARNL3-219ENST00000495172 NESP48681 1621 aa19.44■□□□□ 0.7
GARNL3-219ENST00000495172 ZCCHC6Q5VYS8 1495 aaKnown RBP19.41■□□□□ 0.7
GARNL3-219ENST00000495172 DCAF1Q9Y4B6 1507 aa19.35■□□□□ 0.69
GARNL3-219ENST00000495172 THOC2Q8NI27 1593 aaKnown RBP19.34■□□□□ 0.69
GARNL3-219ENST00000495172 SMARCA2P51531 1590 aa19.21■□□□□ 0.67
GARNL3-219ENST00000495172 NCAPD3P42695 1498 aa19.16■□□□□ 0.66
GARNL3-219ENST00000495172 KIF21AQ7Z4S6 1674 aa19.1■□□□□ 0.65
GARNL3-219ENST00000495172 BAZ1AQ9NRL2 1556 aaPredicted RBP19.03■□□□□ 0.64
GARNL3-219ENST00000495172 ATAD2BQ9ULI0 1458 aa19.03■□□□□ 0.64
GARNL3-219ENST00000495172 OSCARQ8IYS5 282 aa18.94■□□□□ 0.62
GARNL3-219ENST00000495172 RIMBP3CA6NJZ7 1639 aa18.93■□□□□ 0.62
GARNL3-219ENST00000495172 RIMBP3BA6NNM3 1639 aa18.93■□□□□ 0.62
GARNL3-219ENST00000495172 RIMBP3Q9UFD9 1639 aa18.93■□□□□ 0.62
GARNL3-219ENST00000495172 HMGXB3Q12766 1538 aa18.9■□□□□ 0.62
GARNL3-219ENST00000495172 LAMC3Q9Y6N6 1575 aa18.88■□□□□ 0.61
GARNL3-219ENST00000495172 TRHP20396 242 aaPredicted RBP18.84■□□□□ 0.61
GARNL3-219ENST00000495172 PDS5BQ9NTI5 1447 aa18.8■□□□□ 0.6
GARNL3-219ENST00000495172 MRC2Q9UBG0 1479 aa18.77■□□□□ 0.6
GARNL3-219ENST00000495172 BAZ1BQ9UIG0 1483 aaKnown RBP18.77■□□□□ 0.59
GARNL3-219ENST00000495172 WDR62O43379 1518 aa18.76■□□□□ 0.59
GARNL3-219ENST00000495172 SMARCA4P51532 1647 aa18.75■□□□□ 0.59
GARNL3-219ENST00000495172 ARHGEF11O15085 1522 aa18.72■□□□□ 0.59
GARNL3-219ENST00000495172 CYB5RLQ6IPT4 315 aa18.71■□□□□ 0.59
GARNL3-219ENST00000495172 CADPSQ9ULU8 1353 aa18.55■□□□□ 0.56
GARNL3-219ENST00000495172 ARAP1Q96P48 1450 aa18.51■□□□□ 0.55
GARNL3-219ENST00000495172 ILDR1Q86SU0 546 aaPredicted RBP18.5■□□□□ 0.55
GARNL3-219ENST00000495172 CEP164Q9UPV0 1460 aa18.49■□□□□ 0.55
GARNL3-219ENST00000495172 PEG3Q9GZU2 1588 aa18.46■□□□□ 0.55
GARNL3-219ENST00000495172 FANCD2Q9BXW9 1451 aa18.4■□□□□ 0.54
GARNL3-219ENST00000495172 URB2Q14146 1524 aaKnown RBP18.39■□□□□ 0.53
GARNL3-219ENST00000495172 ZNF608Q9ULD9 1512 aaPredicted RBP18.39■□□□□ 0.53
GARNL3-219ENST00000495172 MROH2BQ7Z745 1585 aa18.37■□□□□ 0.53
GARNL3-219ENST00000495172 CHD1O14646 1710 aa18.26■□□□□ 0.51
GARNL3-219ENST00000495172 FBLN2P98095 1184 aa18.16■□□□□ 0.5
GARNL3-219ENST00000495172 EIF4G3O43432 1585 aaKnown RBP18.15■□□□□ 0.5
GARNL3-219ENST00000495172 WIZO95785 1651 aa18.12■□□□□ 0.49
GARNL3-219ENST00000495172 RSF1Q96T23 1441 aaPredicted RBP18.12■□□□□ 0.49
GARNL3-219ENST00000495172 CFTRP13569 1480 aa18.12■□□□□ 0.49
GARNL3-219ENST00000495172 IFT140Q96RY7 1462 aa18.11■□□□□ 0.49
GARNL3-219ENST00000495172 AQRO60306 1485 aaKnown RBP eCLIP18.06■□□□□ 0.48
GARNL3-219ENST00000495172 CLASP1Q7Z460 1538 aa17.94■□□□□ 0.46
GARNL3-219ENST00000495172 TOPBP1Q92547 1522 aa17.94■□□□□ 0.46
GARNL3-219ENST00000495172 KDM4FA0A1W2PPD8 638 aa17.94■□□□□ 0.46
GARNL3-219ENST00000495172 TARBP1Q13395 1621 aaKnown RBP17.88■□□□□ 0.45
GARNL3-219ENST00000495172 GAPVD1Q14C86 1478 aa17.85■□□□□ 0.45
GARNL3-219ENST00000495172 PRDM2Q13029 1718 aa17.84■□□□□ 0.45
GARNL3-219ENST00000495172 SNAPC4Q5SXM2 1469 aa17.8■□□□□ 0.44
GARNL3-219ENST00000495172 KIF13AQ9H1H9 1805 aa17.79■□□□□ 0.44
GARNL3-219ENST00000495172 TDRD9Q8NDG6 1382 aaKnown RBP17.78■□□□□ 0.44
GARNL3-219ENST00000495172 SYNJ1O43426 1573 aa17.77■□□□□ 0.44
GARNL3-219ENST00000495172 ERCC6L2Q5T890 1561 aa17.77■□□□□ 0.44
GARNL3-219ENST00000495172 RAD54L2Q9Y4B4 1467 aa17.75■□□□□ 0.43
GARNL3-219ENST00000495172 CHMP7Q8WUX9 453 aaPredicted RBP17.74■□□□□ 0.43
GARNL3-219ENST00000495172 DNMBPQ6XZF7 1577 aa17.74■□□□□ 0.43
GARNL3-219ENST00000495172 POLA1P09884 1462 aaPredicted RBP17.7■□□□□ 0.42
GARNL3-219ENST00000495172 TOP2AP11388 1531 aaKnown RBP17.67■□□□□ 0.42
GARNL3-219ENST00000495172 ABCC8Q09428 1581 aa17.62■□□□□ 0.41
GARNL3-219ENST00000495172 HECW2Q9P2P5 1572 aa17.62■□□□□ 0.41
GARNL3-219ENST00000495172 SOGA1O94964 1423 aa17.57■□□□□ 0.4
GARNL3-219ENST00000495172 CCDC88BA6NC98 1476 aa17.56■□□□□ 0.4
GARNL3-219ENST00000495172 SYNJ2O15056 1496 aa17.56■□□□□ 0.4
GARNL3-219ENST00000495172 MAGI1Q96QZ7 1491 aaPredicted RBP17.56■□□□□ 0.4
GARNL3-219ENST00000495172 FAM69CQ0P6D2 419 aa17.55■□□□□ 0.4
GARNL3-219ENST00000495172 KDM6BO15054 1643 aa17.54■□□□□ 0.4
GARNL3-219ENST00000495172 FBXO41Q8TF61 875 aa17.51■□□□□ 0.39
GARNL3-219ENST00000495172 GRIN2BQ13224 1484 aa17.5■□□□□ 0.39
GARNL3-219ENST00000495172 TSPOAP1O95153 1857 aa17.49■□□□□ 0.39
GARNL3-219ENST00000495172 ADGRL1O94910 1474 aa17.49■□□□□ 0.39
GARNL3-219ENST00000495172 CEP170Q5SW79 1584 aa17.48■□□□□ 0.39
GARNL3-219ENST00000495172 FGD5Q6ZNL6 1462 aa17.45■□□□□ 0.38
GARNL3-219ENST00000495172 LMTK3Q96Q04 1460 aa17.45■□□□□ 0.38
GARNL3-219ENST00000495172 PBRM1Q86U86 1689 aa17.45■□□□□ 0.38
GARNL3-219ENST00000495172 ABCC10Q5T3U5 1492 aa17.44■□□□□ 0.38
GARNL3-219ENST00000495172 DIP2BQ9P265 1576 aa17.42■□□□□ 0.38
GARNL3-219ENST00000495172 ILDR2Q71H61 639 aa17.4■□□□□ 0.38
GARNL3-219ENST00000495172 WDR97A6NE52 1622 aa17.38■□□□□ 0.37
GARNL3-219ENST00000495172 SHROOM2Q13796 1616 aa17.32■□□□□ 0.36
GARNL3-219ENST00000495172 GRIN2AQ12879 1464 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms