RNA–Protein interactions for RNA: ENST00000494945.1

PKP4-215, Transcript of plakophilin 4, humanhuman

TSL 5

Gene PKP4, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-215ENST00000494945 NISCHQ9Y2I1 1504 aa25.62■■□□□ 1.69
PKP4-215ENST00000494945 CCDC180Q9P1Z9 1646 aa22.64■■□□□ 1.21
PKP4-215ENST00000494945 ZCCHC6Q5VYS8 1495 aaKnown RBP21.49■■□□□ 1.03
PKP4-215ENST00000494945 ABCC9O60706 1549 aa21.32■■□□□ 1
PKP4-215ENST00000494945 DCAF1Q9Y4B6 1507 aa21.26■□□□□ 0.99
PKP4-215ENST00000494945 MYO15BQ96JP2 1530 aa21.09■□□□□ 0.97
PKP4-215ENST00000494945 NACADO15069 1562 aa21.02■□□□□ 0.96
PKP4-215ENST00000494945 DCAF8L2P0C7V8 631 aa20.99■□□□□ 0.95
PKP4-215ENST00000494945 RB1CC1Q8TDY2 1594 aa20.9■□□□□ 0.94
PKP4-215ENST00000494945 UNC13AQ9UPW8 1703 aa20.61■□□□□ 0.89
PKP4-215ENST00000494945 SCRIBQ14160 1630 aa20.61■□□□□ 0.89
PKP4-215ENST00000494945 SHROOM4Q9ULL8 1493 aa20.55■□□□□ 0.88
PKP4-215ENST00000494945 BICRAQ9NZM4 1560 aa20.23■□□□□ 0.83
PKP4-215ENST00000494945 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.78
PKP4-215ENST00000494945 BAZ1AQ9NRL2 1556 aaPredicted RBP19.84■□□□□ 0.77
PKP4-215ENST00000494945 CECR2Q9BXF3 1484 aa19.83■□□□□ 0.76
PKP4-215ENST00000494945 SMARCA4P51532 1647 aa19.8■□□□□ 0.76
PKP4-215ENST00000494945 MROH2BQ7Z745 1585 aa19.74■□□□□ 0.75
PKP4-215ENST00000494945 RSF1Q96T23 1441 aaPredicted RBP19.71■□□□□ 0.75
PKP4-215ENST00000494945 SUPT5HO00267 1087 aaKnown RBP19.65■□□□□ 0.74
PKP4-215ENST00000494945 WIZO95785 1651 aa19.65■□□□□ 0.74
PKP4-215ENST00000494945 EIF4G1Q04637 1599 aaKnown RBP19.63■□□□□ 0.73
PKP4-215ENST00000494945 PEG3Q9GZU2 1588 aa19.59■□□□□ 0.73
PKP4-215ENST00000494945 SMARCA2P51531 1590 aa19.5■□□□□ 0.71
PKP4-215ENST00000494945 TOP2AP11388 1531 aaKnown RBP19.44■□□□□ 0.7
PKP4-215ENST00000494945 ATAD2BQ9ULI0 1458 aa19.43■□□□□ 0.7
PKP4-215ENST00000494945 CC2D2AQ9P2K1 1620 aa19.4■□□□□ 0.7
PKP4-215ENST00000494945 HMGXB3Q12766 1538 aa19.35■□□□□ 0.69
PKP4-215ENST00000494945 BAZ1BQ9UIG0 1483 aaKnown RBP19.33■□□□□ 0.68
PKP4-215ENST00000494945 NCAPD3P42695 1498 aa19.31■□□□□ 0.68
PKP4-215ENST00000494945 CCDC88BA6NC98 1476 aa19.15■□□□□ 0.66
PKP4-215ENST00000494945 PRDM2Q13029 1718 aa19.03■□□□□ 0.64
PKP4-215ENST00000494945 DNAJC5BQ9UF47 199 aa18.87■□□□□ 0.61
PKP4-215ENST00000494945 CFTRP13569 1480 aa18.83■□□□□ 0.6
PKP4-215ENST00000494945 LAMC3Q9Y6N6 1575 aa18.79■□□□□ 0.6
PKP4-215ENST00000494945 CADPSQ9ULU8 1353 aa18.76■□□□□ 0.59
PKP4-215ENST00000494945 CHIC1Q5VXU3 224 aa18.74■□□□□ 0.59
PKP4-215ENST00000494945 ABCC8Q09428 1581 aa18.69■□□□□ 0.58
PKP4-215ENST00000494945 NESP48681 1621 aa18.65■□□□□ 0.58
PKP4-215ENST00000494945 KIF21AQ7Z4S6 1674 aa18.63■□□□□ 0.57
PKP4-215ENST00000494945 BIVM-ERCC5R4GMW8 1640 aa18.61■□□□□ 0.57
PKP4-215ENST00000494945 WRNQ14191 1432 aaPredicted RBP eCLIP18.58■□□□□ 0.57
PKP4-215ENST00000494945 SYNJ1O43426 1573 aa18.58■□□□□ 0.56
PKP4-215ENST00000494945 FANCD2Q9BXW9 1451 aa18.58■□□□□ 0.56
PKP4-215ENST00000494945 TOP2BQ02880 1626 aa18.56■□□□□ 0.56
PKP4-215ENST00000494945 TRIM41Q8WV44 630 aa18.55■□□□□ 0.56
PKP4-215ENST00000494945 PDS5BQ9NTI5 1447 aa18.55■□□□□ 0.56
PKP4-215ENST00000494945 CEP164Q9UPV0 1460 aa18.52■□□□□ 0.55
PKP4-215ENST00000494945 CUX1P39880 1505 aa18.49■□□□□ 0.55
PKP4-215ENST00000494945 DNMBPQ6XZF7 1577 aa18.47■□□□□ 0.55
PKP4-215ENST00000494945 TOPBP1Q92547 1522 aa18.38■□□□□ 0.53
PKP4-215ENST00000494945 URB2Q14146 1524 aaKnown RBP18.37■□□□□ 0.53
PKP4-215ENST00000494945 MRC2Q9UBG0 1479 aa18.35■□□□□ 0.53
PKP4-215ENST00000494945 THOC2Q8NI27 1593 aaKnown RBP18.34■□□□□ 0.53
PKP4-215ENST00000494945 ERCC6Q03468 1493 aa18.33■□□□□ 0.53
PKP4-215ENST00000494945 FGD5Q6ZNL6 1462 aa18.32■□□□□ 0.52
PKP4-215ENST00000494945 WDR62O43379 1518 aa18.3■□□□□ 0.52
PKP4-215ENST00000494945 WDR97A6NE52 1622 aa18.28■□□□□ 0.52
PKP4-215ENST00000494945 EEA1Q15075 1411 aa18.27■□□□□ 0.52
PKP4-215ENST00000494945 POLA1P09884 1462 aaPredicted RBP18.26■□□□□ 0.51
PKP4-215ENST00000494945 SOGA1O94964 1423 aa18.22■□□□□ 0.51
PKP4-215ENST00000494945 TARBP1Q13395 1621 aaKnown RBP18.2■□□□□ 0.5
PKP4-215ENST00000494945 RUSC2Q8N2Y8 1516 aa18.18■□□□□ 0.5
PKP4-215ENST00000494945 ABCA10Q8WWZ4 1543 aa18.18■□□□□ 0.5
PKP4-215ENST00000494945 KIF27Q86VH2 1401 aa18.15■□□□□ 0.5
PKP4-215ENST00000494945 RAD54L2Q9Y4B4 1467 aa18.14■□□□□ 0.49
PKP4-215ENST00000494945 CUX2O14529 1486 aa18.13■□□□□ 0.49
PKP4-215ENST00000494945 FAM9AQ8IZU1 332 aaPredicted RBP18.12■□□□□ 0.49
PKP4-215ENST00000494945 ABCA5Q8WWZ7 1642 aa18.12■□□□□ 0.49
PKP4-215ENST00000494945 KIF21BO75037 1637 aa18.1■□□□□ 0.49
PKP4-215ENST00000494945 PBRM1Q86U86 1689 aa18.09■□□□□ 0.49
PKP4-215ENST00000494945 IFT140Q96RY7 1462 aa18.08■□□□□ 0.49
PKP4-215ENST00000494945 CSRNP3Q8WYN3 585 aa18.06■□□□□ 0.48
PKP4-215ENST00000494945 CUL7Q14999 1698 aa18.04■□□□□ 0.48
PKP4-215ENST00000494945 ERICH3Q5RHP9 1530 aa18■□□□□ 0.47
PKP4-215ENST00000494945 GAPVD1Q14C86 1478 aa18■□□□□ 0.47
PKP4-215ENST00000494945 EIF4G3O43432 1585 aaKnown RBP18■□□□□ 0.47
PKP4-215ENST00000494945 GOLGA3Q08378 1498 aa17.97■□□□□ 0.47
PKP4-215ENST00000494945 PRXQ9BXM0 1461 aa17.96■□□□□ 0.47
PKP4-215ENST00000494945 IGF1RP08069 1367 aa17.94■□□□□ 0.46
PKP4-215ENST00000494945 TDRD9Q8NDG6 1382 aaKnown RBP17.94■□□□□ 0.46
PKP4-215ENST00000494945 LOC105371045A0A1W2PR82 267 aa17.94■□□□□ 0.46
PKP4-215ENST00000494945 ZNF608Q9ULD9 1512 aaPredicted RBP17.93■□□□□ 0.46
PKP4-215ENST00000494945 GRIN2BQ13224 1484 aa17.89■□□□□ 0.45
PKP4-215ENST00000494945 RAPGEF2Q9Y4G8 1499 aa17.89■□□□□ 0.45
PKP4-215ENST00000494945 AQRO60306 1485 aaKnown RBP eCLIP17.88■□□□□ 0.45
PKP4-215ENST00000494945 ADAMTS12P58397 1594 aa17.88■□□□□ 0.45
PKP4-215ENST00000494945 CTTNBP2Q8WZ74 1663 aa17.87■□□□□ 0.45
PKP4-215ENST00000494945 CARMIL1Q5VZK9 1371 aa17.87■□□□□ 0.45
PKP4-215ENST00000494945 TNIKQ9UKE5 1360 aa17.84■□□□□ 0.45
PKP4-215ENST00000494945 EHMT2Q96KQ7 1210 aa17.81■□□□□ 0.44
PKP4-215ENST00000494945 MAGI1Q96QZ7 1491 aaPredicted RBP17.81■□□□□ 0.44
PKP4-215ENST00000494945 FHAD1B1AJZ9 1412 aa17.8■□□□□ 0.44
PKP4-215ENST00000494945 SNAPC4Q5SXM2 1469 aa17.78■□□□□ 0.44
PKP4-215ENST00000494945 UBTFP17480 764 aaKnown RBP17.78■□□□□ 0.44
PKP4-215ENST00000494945 CHD1O14646 1710 aa17.72■□□□□ 0.43
PKP4-215ENST00000494945 CEP162Q5TB80 1403 aa17.72■□□□□ 0.43
PKP4-215ENST00000494945 SYNJ2O15056 1496 aa17.71■□□□□ 0.43
PKP4-215ENST00000494945 GRIN2AQ12879 1464 aa17.68■□□□□ 0.42
PKP4-215ENST00000494945 CLIP1P30622 1438 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms