RNA–Protein interactions for RNA: ENST00000494742.5

PCCB-219, Transcript of propionyl-CoA carboxylase subunit beta, humanhuman

TSL 4

Gene PCCB, Length 547 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCCB-219ENST00000494742 NISCHQ9Y2I1 1504 aa36.94■■■■□ 3.5
PCCB-219ENST00000494742 CCDC180Q9P1Z9 1646 aa33.28■■■□□ 2.92
PCCB-219ENST00000494742 ABCC9O60706 1549 aa33.26■■■□□ 2.91
PCCB-219ENST00000494742 RB1CC1Q8TDY2 1594 aa31.71■■■□□ 2.67
PCCB-219ENST00000494742 NACADO15069 1562 aa31.47■■■□□ 2.63
PCCB-219ENST00000494742 DNAJC5BQ9UF47 199 aa31.3■■■□□ 2.6
PCCB-219ENST00000494742 DCAF8L2P0C7V8 631 aa31.12■■■□□ 2.57
PCCB-219ENST00000494742 MYO15BQ96JP2 1530 aa31.05■■■□□ 2.56
PCCB-219ENST00000494742 UNC13AQ9UPW8 1703 aa30.96■■■□□ 2.55
PCCB-219ENST00000494742 PABPN1Q86U42 306 aaKnown RBP eCLIP30.91■■■□□ 2.54
PCCB-219ENST00000494742 BICRAQ9NZM4 1560 aa30.75■■■□□ 2.51
PCCB-219ENST00000494742 DCAF1Q9Y4B6 1507 aa30.58■■■□□ 2.49
PCCB-219ENST00000494742 ZCCHC6Q5VYS8 1495 aaKnown RBP30.58■■■□□ 2.49
PCCB-219ENST00000494742 SHROOM4Q9ULL8 1493 aa30.44■■■□□ 2.46
PCCB-219ENST00000494742 SCRIBQ14160 1630 aa30.18■■■□□ 2.42
PCCB-219ENST00000494742 CC2D2AQ9P2K1 1620 aa30.09■■■□□ 2.41
PCCB-219ENST00000494742 CECR2Q9BXF3 1484 aa30.02■■■□□ 2.4
PCCB-219ENST00000494742 EIF4G1Q04637 1599 aaKnown RBP30.01■■■□□ 2.39
PCCB-219ENST00000494742 NCAPD3P42695 1498 aa29.04■■■□□ 2.24
PCCB-219ENST00000494742 DNAJC5Q9H3Z4 198 aa28.92■■■□□ 2.22
PCCB-219ENST00000494742 ATAD2BQ9ULI0 1458 aa28.89■■■□□ 2.22
PCCB-219ENST00000494742 SMARCA2P51531 1590 aa28.86■■■□□ 2.21
PCCB-219ENST00000494742 SMARCA4P51532 1647 aa28.84■■■□□ 2.21
PCCB-219ENST00000494742 CUX2O14529 1486 aa28.83■■■□□ 2.21
PCCB-219ENST00000494742 HMGXB3Q12766 1538 aa28.83■■■□□ 2.21
PCCB-219ENST00000494742 ERCC6Q03468 1493 aa28.77■■■□□ 2.2
PCCB-219ENST00000494742 BAZ1AQ9NRL2 1556 aaPredicted RBP28.71■■■□□ 2.19
PCCB-219ENST00000494742 PEG3Q9GZU2 1588 aa28.62■■■□□ 2.17
PCCB-219ENST00000494742 BAZ1BQ9UIG0 1483 aaKnown RBP28.6■■■□□ 2.17
PCCB-219ENST00000494742 NESP48681 1621 aa28.53■■■□□ 2.16
PCCB-219ENST00000494742 LAMC3Q9Y6N6 1575 aa28.42■■■□□ 2.14
PCCB-219ENST00000494742 MROH2BQ7Z745 1585 aa28.41■■■□□ 2.14
PCCB-219ENST00000494742 THOC2Q8NI27 1593 aaKnown RBP28.33■■■□□ 2.13
PCCB-219ENST00000494742 PDS5BQ9NTI5 1447 aa28.25■■■□□ 2.11
PCCB-219ENST00000494742 KIF21AQ7Z4S6 1674 aa28.21■■■□□ 2.11
PCCB-219ENST00000494742 CADPSQ9ULU8 1353 aa28.12■■■□□ 2.09
PCCB-219ENST00000494742 WIZO95785 1651 aa28.07■■■□□ 2.08
PCCB-219ENST00000494742 MRC2Q9UBG0 1479 aa27.99■■■□□ 2.07
PCCB-219ENST00000494742 WDR62O43379 1518 aa27.94■■■□□ 2.06
PCCB-219ENST00000494742 CEP164Q9UPV0 1460 aa27.85■■■□□ 2.05
PCCB-219ENST00000494742 CFTRP13569 1480 aa27.79■■■□□ 2.04
PCCB-219ENST00000494742 FANCD2Q9BXW9 1451 aa27.79■■■□□ 2.04
PCCB-219ENST00000494742 RSF1Q96T23 1441 aaPredicted RBP27.79■■■□□ 2.04
PCCB-219ENST00000494742 TOP2AP11388 1531 aaKnown RBP27.75■■■□□ 2.03
PCCB-219ENST00000494742 URB2Q14146 1524 aaKnown RBP27.55■■■□□ 2
PCCB-219ENST00000494742 PRDM2Q13029 1718 aa27.55■■■□□ 2
PCCB-219ENST00000494742 TRIM41Q8WV44 630 aa27.49■■□□□ 1.99
PCCB-219ENST00000494742 OSCARQ8IYS5 282 aa27.45■■□□□ 1.98
PCCB-219ENST00000494742 CCDC88BA6NC98 1476 aa27.4■■□□□ 1.98
PCCB-219ENST00000494742 IFT140Q96RY7 1462 aa27.32■■□□□ 1.96
PCCB-219ENST00000494742 ABCC8Q09428 1581 aa27.26■■□□□ 1.96
PCCB-219ENST00000494742 TOPBP1Q92547 1522 aa27.25■■□□□ 1.95
PCCB-219ENST00000494742 ZNF608Q9ULD9 1512 aaPredicted RBP27.21■■□□□ 1.95
PCCB-219ENST00000494742 DNMBPQ6XZF7 1577 aa27.16■■□□□ 1.94
PCCB-219ENST00000494742 EIF4G3O43432 1585 aaKnown RBP27.1■■□□□ 1.93
PCCB-219ENST00000494742 RIMBP3CA6NJZ7 1639 aa27.09■■□□□ 1.93
PCCB-219ENST00000494742 RIMBP3BA6NNM3 1639 aa27.09■■□□□ 1.93
PCCB-219ENST00000494742 RIMBP3Q9UFD9 1639 aa27.09■■□□□ 1.93
PCCB-219ENST00000494742 TARBP1Q13395 1621 aaKnown RBP27.05■■□□□ 1.92
PCCB-219ENST00000494742 ARHGEF11O15085 1522 aa27■■□□□ 1.91
PCCB-219ENST00000494742 POLA1P09884 1462 aaPredicted RBP26.96■■□□□ 1.91
PCCB-219ENST00000494742 AQRO60306 1485 aaKnown RBP eCLIP26.95■■□□□ 1.913e-6■■■■□ 21.1
PCCB-219ENST00000494742 CHD1O14646 1710 aa26.93■■□□□ 1.9
PCCB-219ENST00000494742 SOGA1O94964 1423 aa26.84■■□□□ 1.89
PCCB-219ENST00000494742 WDR97A6NE52 1622 aa26.84■■□□□ 1.89
PCCB-219ENST00000494742 RAD54L2Q9Y4B4 1467 aa26.81■■□□□ 1.88
PCCB-219ENST00000494742 FBLN2P98095 1184 aa26.78■■□□□ 1.88
PCCB-219ENST00000494742 FGD5Q6ZNL6 1462 aa26.76■■□□□ 1.87
PCCB-219ENST00000494742 CYB5RLQ6IPT4 315 aa26.76■■□□□ 1.87
PCCB-219ENST00000494742 TDRD9Q8NDG6 1382 aaKnown RBP26.75■■□□□ 1.87
PCCB-219ENST00000494742 CUX1P39880 1505 aa26.71■■□□□ 1.87
PCCB-219ENST00000494742 ARAP1Q96P48 1450 aa26.7■■□□□ 1.87
PCCB-219ENST00000494742 SNAPC4Q5SXM2 1469 aa26.68■■□□□ 1.86
PCCB-219ENST00000494742 MAGI1Q96QZ7 1491 aaPredicted RBP26.68■■□□□ 1.86
PCCB-219ENST00000494742 GRIN2BQ13224 1484 aa26.64■■□□□ 1.86
PCCB-219ENST00000494742 CLASP1Q7Z460 1538 aa26.63■■□□□ 1.85
PCCB-219ENST00000494742 SYNJ1O43426 1573 aa26.62■■□□□ 1.85
PCCB-219ENST00000494742 CHMP7Q8WUX9 453 aaPredicted RBP26.61■■□□□ 1.85
PCCB-219ENST00000494742 SYNJ2O15056 1496 aa26.58■■□□□ 1.85
PCCB-219ENST00000494742 PBRM1Q86U86 1689 aa26.53■■□□□ 1.84
PCCB-219ENST00000494742 GAPVD1Q14C86 1478 aa26.51■■□□□ 1.83
PCCB-219ENST00000494742 TRHP20396 242 aaPredicted RBP26.5■■□□□ 1.83
PCCB-219ENST00000494742 ABCA10Q8WWZ4 1543 aa26.49■■□□□ 1.83
PCCB-219ENST00000494742 ABCA5Q8WWZ7 1642 aa26.47■■□□□ 1.83
PCCB-219ENST00000494742 SUPT5HO00267 1087 aaKnown RBP26.37■■□□□ 1.81
PCCB-219ENST00000494742 WRNQ14191 1432 aaPredicted RBP eCLIP26.36■■□□□ 1.81
PCCB-219ENST00000494742 BIVM-ERCC5R4GMW8 1640 aa26.31■■□□□ 1.8
PCCB-219ENST00000494742 TOP2BQ02880 1626 aa26.3■■□□□ 1.8
PCCB-219ENST00000494742 GRIN2AQ12879 1464 aa26.29■■□□□ 1.8
PCCB-219ENST00000494742 ADAMTS12P58397 1594 aa26.25■■□□□ 1.79
PCCB-219ENST00000494742 NUP160Q12769 1436 aa26.22■■□□□ 1.79
PCCB-219ENST00000494742 FHAD1B1AJZ9 1412 aa26.19■■□□□ 1.78
PCCB-219ENST00000494742 CEP170Q5SW79 1584 aa26.19■■□□□ 1.78
PCCB-219ENST00000494742 ERICH3Q5RHP9 1530 aa26.18■■□□□ 1.78
PCCB-219ENST00000494742 SHROOM2Q13796 1616 aa26.14■■□□□ 1.78
PCCB-219ENST00000494742 ERCC6L2Q5T890 1561 aa26.13■■□□□ 1.77
PCCB-219ENST00000494742 PRG4Q92954 1404 aaPredicted RBP25.95■■□□□ 1.74
PCCB-219ENST00000494742 JPH4Q96JJ6 628 aa25.92■■□□□ 1.74
PCCB-219ENST00000494742 RUSC2Q8N2Y8 1516 aa25.89■■□□□ 1.74
PCCB-219ENST00000494742 AEBP2Q6ZN18 517 aaPredicted RBP25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms