RNA–Protein interactions for RNA: ENST00000494646.1

MSH5-218, Transcript of mutS homolog 5, humanhuman

TSL 4

Gene MSH5, Length 528 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-218ENST00000494646 NISCHQ9Y2I1 1504 aa23.65■■□□□ 1.38
MSH5-218ENST00000494646 CCDC180Q9P1Z9 1646 aa21.1■□□□□ 0.97
MSH5-218ENST00000494646 ABCC9O60706 1549 aa21.06■□□□□ 0.96
MSH5-218ENST00000494646 DCAF8L2P0C7V8 631 aa20.12■□□□□ 0.81
MSH5-218ENST00000494646 RB1CC1Q8TDY2 1594 aa20.04■□□□□ 0.8
MSH5-218ENST00000494646 NACADO15069 1562 aa19.92■□□□□ 0.78
MSH5-218ENST00000494646 PABPN1Q86U42 306 aaKnown RBP eCLIP19.72■□□□□ 0.752e-9■■■■□ 20.9
MSH5-218ENST00000494646 DNAJC5BQ9UF47 199 aa19.69■□□□□ 0.74
MSH5-218ENST00000494646 UNC13AQ9UPW8 1703 aa19.67■□□□□ 0.74
MSH5-218ENST00000494646 MYO15BQ96JP2 1530 aa19.64■□□□□ 0.73
MSH5-218ENST00000494646 ZCCHC6Q5VYS8 1495 aaKnown RBP19.59■□□□□ 0.73
MSH5-218ENST00000494646 BICRAQ9NZM4 1560 aa19.47■□□□□ 0.71
MSH5-218ENST00000494646 DCAF1Q9Y4B6 1507 aa19.46■□□□□ 0.71
MSH5-218ENST00000494646 SCRIBQ14160 1630 aa19.33■□□□□ 0.68
MSH5-218ENST00000494646 SHROOM4Q9ULL8 1493 aa19.08■□□□□ 0.64
MSH5-218ENST00000494646 CC2D2AQ9P2K1 1620 aa19■□□□□ 0.63
MSH5-218ENST00000494646 EIF4G1Q04637 1599 aaKnown RBP18.98■□□□□ 0.63
MSH5-218ENST00000494646 CECR2Q9BXF3 1484 aa18.92■□□□□ 0.62
MSH5-218ENST00000494646 SMARCA4P51532 1647 aa18.41■□□□□ 0.54
MSH5-218ENST00000494646 NCAPD3P42695 1498 aa18.41■□□□□ 0.54
MSH5-218ENST00000494646 ATAD2BQ9ULI0 1458 aa18.39■□□□□ 0.54
MSH5-218ENST00000494646 SMARCA2P51531 1590 aa18.32■□□□□ 0.52
MSH5-218ENST00000494646 BAZ1AQ9NRL2 1556 aaPredicted RBP18.32■□□□□ 0.52
MSH5-218ENST00000494646 MROH2BQ7Z745 1585 aa18.25■□□□□ 0.51
MSH5-218ENST00000494646 HMGXB3Q12766 1538 aa18.24■□□□□ 0.51
MSH5-218ENST00000494646 BAZ1BQ9UIG0 1483 aaKnown RBP18.23■□□□□ 0.51
MSH5-218ENST00000494646 PEG3Q9GZU2 1588 aa18.17■□□□□ 0.5
MSH5-218ENST00000494646 NESP48681 1621 aa18.15■□□□□ 0.5
MSH5-218ENST00000494646 ERCC6Q03468 1493 aa18.14■□□□□ 0.5
MSH5-218ENST00000494646 WIZO95785 1651 aa18.08■□□□□ 0.48
MSH5-218ENST00000494646 CUX2O14529 1486 aa17.98■□□□□ 0.47
MSH5-218ENST00000494646 LAMC3Q9Y6N6 1575 aa17.96■□□□□ 0.47
MSH5-218ENST00000494646 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
MSH5-218ENST00000494646 KIF21AQ7Z4S6 1674 aa17.91■□□□□ 0.46
MSH5-218ENST00000494646 DNAJC5Q9H3Z4 198 aa17.9■□□□□ 0.46
MSH5-218ENST00000494646 CADPSQ9ULU8 1353 aa17.9■□□□□ 0.46
MSH5-218ENST00000494646 PDS5BQ9NTI5 1447 aa17.88■□□□□ 0.45
MSH5-218ENST00000494646 THOC2Q8NI27 1593 aaKnown RBP17.84■□□□□ 0.45
MSH5-218ENST00000494646 CHIC1Q5VXU3 224 aa17.81■□□□□ 0.44
MSH5-218ENST00000494646 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.44
MSH5-218ENST00000494646 MRC2Q9UBG0 1479 aa17.69■□□□□ 0.42
MSH5-218ENST00000494646 CFTRP13569 1480 aa17.69■□□□□ 0.42
MSH5-218ENST00000494646 FANCD2Q9BXW9 1451 aa17.68■□□□□ 0.42
MSH5-218ENST00000494646 CEP164Q9UPV0 1460 aa17.67■□□□□ 0.42
MSH5-218ENST00000494646 CCDC88BA6NC98 1476 aa17.64■□□□□ 0.41
MSH5-218ENST00000494646 WDR62O43379 1518 aa17.62■□□□□ 0.41
MSH5-218ENST00000494646 PRDM2Q13029 1718 aa17.54■□□□□ 0.4
MSH5-218ENST00000494646 URB2Q14146 1524 aaKnown RBP17.52■□□□□ 0.4
MSH5-218ENST00000494646 SUPT5HO00267 1087 aaKnown RBP17.41■□□□□ 0.38
MSH5-218ENST00000494646 TOPBP1Q92547 1522 aa17.36■□□□□ 0.37
MSH5-218ENST00000494646 OSCARQ8IYS5 282 aa17.32■□□□□ 0.36
MSH5-218ENST00000494646 ABCC8Q09428 1581 aa17.31■□□□□ 0.36
MSH5-218ENST00000494646 ZNF608Q9ULD9 1512 aaPredicted RBP17.31■□□□□ 0.36
MSH5-218ENST00000494646 IFT140Q96RY7 1462 aa17.31■□□□□ 0.36
MSH5-218ENST00000494646 DNMBPQ6XZF7 1577 aa17.29■□□□□ 0.36
MSH5-218ENST00000494646 TRIM41Q8WV44 630 aa17.28■□□□□ 0.36
MSH5-218ENST00000494646 AQRO60306 1485 aaKnown RBP eCLIP17.21■□□□□ 0.351e-7■■■■■ 39.8
MSH5-218ENST00000494646 POLA1P09884 1462 aaPredicted RBP17.19■□□□□ 0.34
MSH5-218ENST00000494646 RAD54L2Q9Y4B4 1467 aa17.19■□□□□ 0.34
MSH5-218ENST00000494646 TARBP1Q13395 1621 aaKnown RBP17.19■□□□□ 0.34
MSH5-218ENST00000494646 AEBP2Q6ZN18 517 aaPredicted RBP17.19■□□□□ 0.34
MSH5-218ENST00000494646 EIF4G3O43432 1585 aaKnown RBP17.18■□□□□ 0.34
MSH5-218ENST00000494646 SOGA1O94964 1423 aa17.17■□□□□ 0.34
MSH5-218ENST00000494646 FBLN2P98095 1184 aa17.14■□□□□ 0.33
MSH5-218ENST00000494646 TDRD9Q8NDG6 1382 aaKnown RBP17.14■□□□□ 0.33
MSH5-218ENST00000494646 FGD5Q6ZNL6 1462 aa17.12■□□□□ 0.33
MSH5-218ENST00000494646 CUX1P39880 1505 aa17.12■□□□□ 0.33
MSH5-218ENST00000494646 CHD1O14646 1710 aa17.07■□□□□ 0.32
MSH5-218ENST00000494646 RIMBP3CA6NJZ7 1639 aa17.03■□□□□ 0.32
MSH5-218ENST00000494646 RIMBP3BA6NNM3 1639 aa17.03■□□□□ 0.32
MSH5-218ENST00000494646 RIMBP3Q9UFD9 1639 aa17.03■□□□□ 0.32
MSH5-218ENST00000494646 CHMP7Q8WUX9 453 aaPredicted RBP16.99■□□□□ 0.31
MSH5-218ENST00000494646 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
MSH5-218ENST00000494646 ARHGEF11O15085 1522 aa16.96■□□□□ 0.3
MSH5-218ENST00000494646 CYB5RLQ6IPT4 315 aa16.95■□□□□ 0.3
MSH5-218ENST00000494646 WDR97A6NE52 1622 aa16.95■□□□□ 0.3
MSH5-218ENST00000494646 GRIN2BQ13224 1484 aa16.94■□□□□ 0.3
MSH5-218ENST00000494646 GAPVD1Q14C86 1478 aa16.93■□□□□ 0.3
MSH5-218ENST00000494646 PBRM1Q86U86 1689 aa16.91■□□□□ 0.3
MSH5-218ENST00000494646 WRNQ14191 1432 aaPredicted RBP eCLIP16.91■□□□□ 0.3
MSH5-218ENST00000494646 MAGI1Q96QZ7 1491 aaPredicted RBP16.9■□□□□ 0.3
MSH5-218ENST00000494646 ABCA10Q8WWZ4 1543 aa16.9■□□□□ 0.3
MSH5-218ENST00000494646 SYNJ1O43426 1573 aa16.89■□□□□ 0.29
MSH5-218ENST00000494646 TOP2BQ02880 1626 aa16.88■□□□□ 0.29
MSH5-218ENST00000494646 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
MSH5-218ENST00000494646 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
MSH5-218ENST00000494646 ABCA5Q8WWZ7 1642 aa16.85■□□□□ 0.29
MSH5-218ENST00000494646 CLASP1Q7Z460 1538 aa16.8■□□□□ 0.28
MSH5-218ENST00000494646 ARAP1Q96P48 1450 aa16.8■□□□□ 0.28
MSH5-218ENST00000494646 TRHP20396 242 aaPredicted RBP16.73■□□□□ 0.27
MSH5-218ENST00000494646 GRIN2AQ12879 1464 aa16.73■□□□□ 0.27
MSH5-218ENST00000494646 ADAMTS12P58397 1594 aa16.71■□□□□ 0.27
MSH5-218ENST00000494646 FHAD1B1AJZ9 1412 aa16.7■□□□□ 0.26
MSH5-218ENST00000494646 ERICH3Q5RHP9 1530 aa16.68■□□□□ 0.26
MSH5-218ENST00000494646 CEP170Q5SW79 1584 aa16.67■□□□□ 0.26
MSH5-218ENST00000494646 ERCC6L2Q5T890 1561 aa16.64■□□□□ 0.25
MSH5-218ENST00000494646 NUP160Q12769 1436 aa16.63■□□□□ 0.25
MSH5-218ENST00000494646 JPH4Q96JJ6 628 aa16.59■□□□□ 0.25
MSH5-218ENST00000494646 IGF1RP08069 1367 aa16.58■□□□□ 0.24
MSH5-218ENST00000494646 KIF27Q86VH2 1401 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms