RNA–Protein interactions for RNA: ENST00000494464.5

ERCC3-209, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 1 (best)

Gene ERCC3, Length 1,367 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-209ENST00000494464 NISCHQ9Y2I1 1504 aa32.62■■■□□ 2.81
ERCC3-209ENST00000494464 CCDC180Q9P1Z9 1646 aa29.2■■■□□ 2.26
ERCC3-209ENST00000494464 ABCC9O60706 1549 aa28.64■■■□□ 2.18
ERCC3-209ENST00000494464 RB1CC1Q8TDY2 1594 aa27.53■■■□□ 2
ERCC3-209ENST00000494464 NACADO15069 1562 aa27.45■■□□□ 1.99
ERCC3-209ENST00000494464 MYO15BQ96JP2 1530 aa27.25■■□□□ 1.95
ERCC3-209ENST00000494464 ZCCHC6Q5VYS8 1495 aaKnown RBP27.15■■□□□ 1.94
ERCC3-209ENST00000494464 DCAF8L2P0C7V8 631 aa27.12■■□□□ 1.93
ERCC3-209ENST00000494464 DCAF1Q9Y4B6 1507 aa27.03■■□□□ 1.92
ERCC3-209ENST00000494464 UNC13AQ9UPW8 1703 aa26.94■■□□□ 1.9
ERCC3-209ENST00000494464 BICRAQ9NZM4 1560 aa26.71■■□□□ 1.87
ERCC3-209ENST00000494464 PABPN1Q86U42 306 aaKnown RBP eCLIP26.63■■□□□ 1.85
ERCC3-209ENST00000494464 SCRIBQ14160 1630 aa26.52■■□□□ 1.84
ERCC3-209ENST00000494464 SHROOM4Q9ULL8 1493 aa26.48■■□□□ 1.83
ERCC3-209ENST00000494464 DNAJC5BQ9UF47 199 aa26.43■■□□□ 1.82
ERCC3-209ENST00000494464 EIF4G1Q04637 1599 aaKnown RBP26.02■■□□□ 1.76
ERCC3-209ENST00000494464 CC2D2AQ9P2K1 1620 aa25.96■■□□□ 1.75
ERCC3-209ENST00000494464 CECR2Q9BXF3 1484 aa25.79■■□□□ 1.72
ERCC3-209ENST00000494464 SMARCA4P51532 1647 aa25.38■■□□□ 1.65
ERCC3-209ENST00000494464 BAZ1AQ9NRL2 1556 aaPredicted RBP25.31■■□□□ 1.64
ERCC3-209ENST00000494464 NCAPD3P42695 1498 aa25.3■■□□□ 1.64
ERCC3-209ENST00000494464 SMARCA2P51531 1590 aa25.27■■□□□ 1.64
ERCC3-209ENST00000494464 ATAD2BQ9ULI0 1458 aa25.26■■□□□ 1.63
ERCC3-209ENST00000494464 HMGXB3Q12766 1538 aa25.22■■□□□ 1.63
ERCC3-209ENST00000494464 PEG3Q9GZU2 1588 aa25.18■■□□□ 1.62
ERCC3-209ENST00000494464 MROH2BQ7Z745 1585 aa25.1■■□□□ 1.61
ERCC3-209ENST00000494464 BAZ1BQ9UIG0 1483 aaKnown RBP25.05■■□□□ 1.6
ERCC3-209ENST00000494464 WIZO95785 1651 aa24.83■■□□□ 1.57
ERCC3-209ENST00000494464 ERCC6Q03468 1493 aa24.72■■□□□ 1.55
ERCC3-209ENST00000494464 RSF1Q96T23 1441 aaPredicted RBP24.72■■□□□ 1.55
ERCC3-209ENST00000494464 NESP48681 1621 aa24.72■■□□□ 1.55
ERCC3-209ENST00000494464 LAMC3Q9Y6N6 1575 aa24.71■■□□□ 1.55
ERCC3-209ENST00000494464 CUX2O14529 1486 aa24.61■■□□□ 1.53
ERCC3-209ENST00000494464 TOP2AP11388 1531 aaKnown RBP24.59■■□□□ 1.53
ERCC3-209ENST00000494464 CADPSQ9ULU8 1353 aa24.51■■□□□ 1.51
ERCC3-209ENST00000494464 THOC2Q8NI27 1593 aaKnown RBP24.5■■□□□ 1.51
ERCC3-209ENST00000494464 KIF21AQ7Z4S6 1674 aa24.5■■□□□ 1.51
ERCC3-209ENST00000494464 PDS5BQ9NTI5 1447 aa24.49■■□□□ 1.51
ERCC3-209ENST00000494464 CFTRP13569 1480 aa24.36■■□□□ 1.49
ERCC3-209ENST00000494464 MRC2Q9UBG0 1479 aa24.28■■□□□ 1.48
ERCC3-209ENST00000494464 CEP164Q9UPV0 1460 aa24.26■■□□□ 1.47
ERCC3-209ENST00000494464 PRDM2Q13029 1718 aa24.26■■□□□ 1.47
ERCC3-209ENST00000494464 WDR62O43379 1518 aa24.25■■□□□ 1.47
ERCC3-209ENST00000494464 FANCD2Q9BXW9 1451 aa24.25■■□□□ 1.47
ERCC3-209ENST00000494464 CCDC88BA6NC98 1476 aa24.23■■□□□ 1.47
ERCC3-209ENST00000494464 URB2Q14146 1524 aaKnown RBP24.03■■□□□ 1.44
ERCC3-209ENST00000494464 DNAJC5Q9H3Z4 198 aa24.02■■□□□ 1.44
ERCC3-209ENST00000494464 ABCC8Q09428 1581 aa23.85■■□□□ 1.41
ERCC3-209ENST00000494464 TOPBP1Q92547 1522 aa23.85■■□□□ 1.41
ERCC3-209ENST00000494464 DNMBPQ6XZF7 1577 aa23.84■■□□□ 1.41
ERCC3-209ENST00000494464 SUPT5HO00267 1087 aaKnown RBP23.77■■□□□ 1.4
ERCC3-209ENST00000494464 IFT140Q96RY7 1462 aa23.76■■□□□ 1.39
ERCC3-209ENST00000494464 TARBP1Q13395 1621 aaKnown RBP23.65■■□□□ 1.38
ERCC3-209ENST00000494464 ZNF608Q9ULD9 1512 aaPredicted RBP23.64■■□□□ 1.37
ERCC3-209ENST00000494464 POLA1P09884 1462 aaPredicted RBP23.63■■□□□ 1.37
ERCC3-209ENST00000494464 EIF4G3O43432 1585 aaKnown RBP23.62■■□□□ 1.37
ERCC3-209ENST00000494464 CUX1P39880 1505 aa23.58■■□□□ 1.37
ERCC3-209ENST00000494464 FGD5Q6ZNL6 1462 aa23.53■■□□□ 1.36
ERCC3-209ENST00000494464 WDR97A6NE52 1622 aa23.51■■□□□ 1.35
ERCC3-209ENST00000494464 RAD54L2Q9Y4B4 1467 aa23.48■■□□□ 1.35
ERCC3-209ENST00000494464 SOGA1O94964 1423 aa23.47■■□□□ 1.35
ERCC3-209ENST00000494464 AQRO60306 1485 aaKnown RBP eCLIP23.45■■□□□ 1.343e-7■■■■■ 43.2
ERCC3-209ENST00000494464 OSCARQ8IYS5 282 aa23.41■■□□□ 1.34
ERCC3-209ENST00000494464 BIVM-ERCC5R4GMW8 1640 aa23.38■■□□□ 1.33
ERCC3-209ENST00000494464 CHD1O14646 1710 aa23.35■■□□□ 1.33
ERCC3-209ENST00000494464 TOP2BQ02880 1626 aa23.35■■□□□ 1.33
ERCC3-209ENST00000494464 TDRD9Q8NDG6 1382 aaKnown RBP23.34■■□□□ 1.33
ERCC3-209ENST00000494464 WRNQ14191 1432 aaPredicted RBP eCLIP23.32■■□□□ 1.32
ERCC3-209ENST00000494464 ABCA10Q8WWZ4 1543 aa23.31■■□□□ 1.32
ERCC3-209ENST00000494464 SYNJ1O43426 1573 aa23.31■■□□□ 1.32
ERCC3-209ENST00000494464 ABCA5Q8WWZ7 1642 aa23.28■■□□□ 1.32
ERCC3-209ENST00000494464 PBRM1Q86U86 1689 aa23.28■■□□□ 1.32
ERCC3-209ENST00000494464 GRIN2BQ13224 1484 aa23.28■■□□□ 1.32
ERCC3-209ENST00000494464 SNAPC4Q5SXM2 1469 aa23.28■■□□□ 1.32
ERCC3-209ENST00000494464 MAGI1Q96QZ7 1491 aaPredicted RBP23.27■■□□□ 1.32
ERCC3-209ENST00000494464 GAPVD1Q14C86 1478 aa23.24■■□□□ 1.31
ERCC3-209ENST00000494464 RIMBP3CA6NJZ7 1639 aa23.18■■□□□ 1.3
ERCC3-209ENST00000494464 RIMBP3BA6NNM3 1639 aa23.18■■□□□ 1.3
ERCC3-209ENST00000494464 RIMBP3Q9UFD9 1639 aa23.18■■□□□ 1.3
ERCC3-209ENST00000494464 SYNJ2O15056 1496 aa23.16■■□□□ 1.3
ERCC3-209ENST00000494464 ARHGEF11O15085 1522 aa23.14■■□□□ 1.3
ERCC3-209ENST00000494464 FBLN2P98095 1184 aa23.13■■□□□ 1.29
ERCC3-209ENST00000494464 CLASP1Q7Z460 1538 aa23.1■■□□□ 1.29
ERCC3-209ENST00000494464 ADAMTS12P58397 1594 aa23.08■■□□□ 1.28
ERCC3-209ENST00000494464 CHMP7Q8WUX9 453 aaPredicted RBP23.07■■□□□ 1.28
ERCC3-209ENST00000494464 TRIM41Q8WV44 630 aa23.06■■□□□ 1.28
ERCC3-209ENST00000494464 ERICH3Q5RHP9 1530 aa23.05■■□□□ 1.28
ERCC3-209ENST00000494464 GRIN2AQ12879 1464 aa22.99■■□□□ 1.27
ERCC3-209ENST00000494464 FHAD1B1AJZ9 1412 aa22.96■■□□□ 1.27
ERCC3-209ENST00000494464 ARAP1Q96P48 1450 aa22.93■■□□□ 1.26
ERCC3-209ENST00000494464 NUP160Q12769 1436 aa22.91■■□□□ 1.26
ERCC3-209ENST00000494464 CEP170Q5SW79 1584 aa22.89■■□□□ 1.26
ERCC3-209ENST00000494464 KIF27Q86VH2 1401 aa22.84■■□□□ 1.25
ERCC3-209ENST00000494464 CUL7Q14999 1698 aa22.82■■□□□ 1.24
ERCC3-209ENST00000494464 CYB5RLQ6IPT4 315 aa22.81■■□□□ 1.24
ERCC3-209ENST00000494464 SHROOM2Q13796 1616 aa22.81■■□□□ 1.24
ERCC3-209ENST00000494464 RUSC2Q8N2Y8 1516 aa22.75■■□□□ 1.23
ERCC3-209ENST00000494464 IGF1RP08069 1367 aa22.74■■□□□ 1.23
ERCC3-209ENST00000494464 ERCC6L2Q5T890 1561 aa22.71■■□□□ 1.23
ERCC3-209ENST00000494464 KIAA0586Q9BVV6 1533 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms