RNA–Protein interactions for RNA: ENST00000494339.5

KPNA1-210, Transcript of karyopherin subunit alpha 1, humanhuman

TSL 2

Gene KPNA1, Length 1,923 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNA1-210ENST00000494339 NISCHQ9Y2I1 1504 aa47.45■■■■■ 5.19
KPNA1-210ENST00000494339 CCDC180Q9P1Z9 1646 aa41.53■■■■■ 4.24
KPNA1-210ENST00000494339 ZCCHC6Q5VYS8 1495 aaKnown RBP39.79■■■■□ 3.96
KPNA1-210ENST00000494339 ABCC9O60706 1549 aa39.65■■■■□ 3.94
KPNA1-210ENST00000494339 DCAF8L2P0C7V8 631 aa39.4■■■■□ 3.9
KPNA1-210ENST00000494339 DCAF1Q9Y4B6 1507 aa39.18■■■■□ 3.86
KPNA1-210ENST00000494339 MYO15BQ96JP2 1530 aa38.84■■■■□ 3.81
KPNA1-210ENST00000494339 NACADO15069 1562 aa38.76■■■■□ 3.8
KPNA1-210ENST00000494339 SHROOM4Q9ULL8 1493 aa38.55■■■■□ 3.76
KPNA1-210ENST00000494339 RB1CC1Q8TDY2 1594 aa38.53■■■■□ 3.76
KPNA1-210ENST00000494339 SCRIBQ14160 1630 aa38.21■■■■□ 3.71
KPNA1-210ENST00000494339 UNC13AQ9UPW8 1703 aa37.79■■■■□ 3.64
KPNA1-210ENST00000494339 BICRAQ9NZM4 1560 aa37.38■■■■□ 3.57
KPNA1-210ENST00000494339 PABPN1Q86U42 306 aaKnown RBP eCLIP37.34■■■■□ 3.57
KPNA1-210ENST00000494339 CECR2Q9BXF3 1484 aa36.93■■■■□ 3.5
KPNA1-210ENST00000494339 SUPT5HO00267 1087 aaKnown RBP36.91■■■■□ 3.5
KPNA1-210ENST00000494339 RSF1Q96T23 1441 aaPredicted RBP36.68■■■■□ 3.46
KPNA1-210ENST00000494339 MROH2BQ7Z745 1585 aa36.67■■■■□ 3.46
KPNA1-210ENST00000494339 BAZ1AQ9NRL2 1556 aaPredicted RBP36.67■■■■□ 3.46
KPNA1-210ENST00000494339 SMARCA4P51532 1647 aa36.56■■■■□ 3.44
KPNA1-210ENST00000494339 WIZO95785 1651 aa36.37■■■■□ 3.41
KPNA1-210ENST00000494339 EIF4G1Q04637 1599 aaKnown RBP36.29■■■■□ 3.4
KPNA1-210ENST00000494339 PEG3Q9GZU2 1588 aa36.1■■■■□ 3.37
KPNA1-210ENST00000494339 ATAD2BQ9ULI0 1458 aa36.04■■■■□ 3.36
KPNA1-210ENST00000494339 SMARCA2P51531 1590 aa36.01■■■■□ 3.36
KPNA1-210ENST00000494339 TOP2AP11388 1531 aaKnown RBP35.94■■■■□ 3.34
KPNA1-210ENST00000494339 DNAJC5BQ9UF47 199 aa35.91■■■■□ 3.34
KPNA1-210ENST00000494339 CC2D2AQ9P2K1 1620 aa35.86■■■■□ 3.33
KPNA1-210ENST00000494339 BAZ1BQ9UIG0 1483 aaKnown RBP35.83■■■■□ 3.33
KPNA1-210ENST00000494339 NCAPD3P42695 1498 aa35.77■■■■□ 3.32
KPNA1-210ENST00000494339 HMGXB3Q12766 1538 aa35.7■■■■□ 3.3
KPNA1-210ENST00000494339 CCDC88BA6NC98 1476 aa35.58■■■■□ 3.29
KPNA1-210ENST00000494339 CHIC1Q5VXU3 224 aa35.1■■■■□ 3.21
KPNA1-210ENST00000494339 CFTRP13569 1480 aa34.9■■■■□ 3.18
KPNA1-210ENST00000494339 CADPSQ9ULU8 1353 aa34.85■■■■□ 3.17
KPNA1-210ENST00000494339 ABCC8Q09428 1581 aa34.76■■■■□ 3.16
KPNA1-210ENST00000494339 PRDM2Q13029 1718 aa34.72■■■■□ 3.15
KPNA1-210ENST00000494339 NESP48681 1621 aa34.7■■■■□ 3.15
KPNA1-210ENST00000494339 TRIM41Q8WV44 630 aa34.7■■■■□ 3.15
KPNA1-210ENST00000494339 LAMC3Q9Y6N6 1575 aa34.63■■■■□ 3.13
KPNA1-210ENST00000494339 WRNQ14191 1432 aaPredicted RBP eCLIP34.55■■■■□ 3.12
KPNA1-210ENST00000494339 FANCD2Q9BXW9 1451 aa34.48■■■■□ 3.11
KPNA1-210ENST00000494339 SYNJ1O43426 1573 aa34.43■■■■□ 3.1
KPNA1-210ENST00000494339 PDS5BQ9NTI5 1447 aa34.37■■■■□ 3.09
KPNA1-210ENST00000494339 CUX1P39880 1505 aa34.31■■■■□ 3.08
KPNA1-210ENST00000494339 CEP164Q9UPV0 1460 aa34.3■■■■□ 3.08
KPNA1-210ENST00000494339 TOP2BQ02880 1626 aa34.3■■■■□ 3.08
KPNA1-210ENST00000494339 KIF21AQ7Z4S6 1674 aa34.28■■■■□ 3.08
KPNA1-210ENST00000494339 BIVM-ERCC5R4GMW8 1640 aa34.27■■■■□ 3.08
KPNA1-210ENST00000494339 FAM9AQ8IZU1 332 aaPredicted RBP34.1■■■■□ 3.05
KPNA1-210ENST00000494339 DNMBPQ6XZF7 1577 aa34.1■■■■□ 3.05
KPNA1-210ENST00000494339 URB2Q14146 1524 aaKnown RBP34.07■■■■□ 3.05
KPNA1-210ENST00000494339 TOPBP1Q92547 1522 aa34.07■■■■□ 3.04
KPNA1-210ENST00000494339 ERCC6Q03468 1493 aa34.03■■■■□ 3.04
KPNA1-210ENST00000494339 SOGA1O94964 1423 aa34.02■■■■□ 3.04
KPNA1-210ENST00000494339 FGD5Q6ZNL6 1462 aa33.99■■■■□ 3.03
KPNA1-210ENST00000494339 MRC2Q9UBG0 1479 aa33.96■■■■□ 3.03
KPNA1-210ENST00000494339 RUSC2Q8N2Y8 1516 aa33.92■■■■□ 3.02
KPNA1-210ENST00000494339 POLA1P09884 1462 aaPredicted RBP33.88■■■■□ 3.01
KPNA1-210ENST00000494339 EEA1Q15075 1411 aa33.82■■■■□ 3
KPNA1-210ENST00000494339 WDR62O43379 1518 aa33.79■■■■□ 3
KPNA1-210ENST00000494339 RAD54L2Q9Y4B4 1467 aa33.78■■■■□ 3
KPNA1-210ENST00000494339 THOC2Q8NI27 1593 aaKnown RBP33.78■■■■□ 3
KPNA1-210ENST00000494339 LOC105371045A0A1W2PR82 267 aa33.78■■■■□ 3
KPNA1-210ENST00000494339 CUX2O14529 1486 aa33.72■■■□□ 2.99
KPNA1-210ENST00000494339 CSRNP3Q8WYN3 585 aa33.71■■■□□ 2.99
KPNA1-210ENST00000494339 KIF27Q86VH2 1401 aa33.7■■■□□ 2.98
KPNA1-210ENST00000494339 EHMT2Q96KQ7 1210 aa33.67■■■□□ 2.98
KPNA1-210ENST00000494339 ABCA10Q8WWZ4 1543 aa33.66■■■□□ 2.98
KPNA1-210ENST00000494339 WDR97A6NE52 1622 aa33.6■■■□□ 2.97
KPNA1-210ENST00000494339 TARBP1Q13395 1621 aaKnown RBP33.58■■■□□ 2.97
KPNA1-210ENST00000494339 TDRD9Q8NDG6 1382 aaKnown RBP33.49■■■□□ 2.95
KPNA1-210ENST00000494339 IFT140Q96RY7 1462 aa33.48■■■□□ 2.95
KPNA1-210ENST00000494339 IGF1RP08069 1367 aa33.44■■■□□ 2.94
KPNA1-210ENST00000494339 KIF21BO75037 1637 aa33.43■■■□□ 2.94
KPNA1-210ENST00000494339 ABCA5Q8WWZ7 1642 aa33.43■■■□□ 2.94
KPNA1-210ENST00000494339 GAPVD1Q14C86 1478 aa33.38■■■□□ 2.93
KPNA1-210ENST00000494339 GOLGA3Q08378 1498 aa33.38■■■□□ 2.93
KPNA1-210ENST00000494339 PRXQ9BXM0 1461 aa33.37■■■□□ 2.93
KPNA1-210ENST00000494339 ZNF608Q9ULD9 1512 aaPredicted RBP33.35■■■□□ 2.93
KPNA1-210ENST00000494339 RAPGEF2Q9Y4G8 1499 aa33.34■■■□□ 2.93
KPNA1-210ENST00000494339 AQRO60306 1485 aaKnown RBP eCLIP33.33■■■□□ 2.936e-7■□□□□ 10.8
KPNA1-210ENST00000494339 UBTFP17480 764 aaKnown RBP33.3■■■□□ 2.92
KPNA1-210ENST00000494339 CARMIL1Q5VZK9 1371 aa33.27■■■□□ 2.92
KPNA1-210ENST00000494339 ERICH3Q5RHP9 1530 aa33.26■■■□□ 2.92
KPNA1-210ENST00000494339 PBRM1Q86U86 1689 aa33.24■■■□□ 2.91
KPNA1-210ENST00000494339 EIF4G3O43432 1585 aaKnown RBP33.23■■■□□ 2.91
KPNA1-210ENST00000494339 CUL7Q14999 1698 aa33.21■■■□□ 2.91
KPNA1-210ENST00000494339 TNIKQ9UKE5 1360 aa33.19■■■□□ 2.9
KPNA1-210ENST00000494339 GRIN2BQ13224 1484 aa33.17■■■□□ 2.9
KPNA1-210ENST00000494339 ADAMTS12P58397 1594 aa33.02■■■□□ 2.88
KPNA1-210ENST00000494339 CEP162Q5TB80 1403 aa33.02■■■□□ 2.88
KPNA1-210ENST00000494339 SNAPC4Q5SXM2 1469 aa33.01■■■□□ 2.88
KPNA1-210ENST00000494339 FHAD1B1AJZ9 1412 aa33■■■□□ 2.87
KPNA1-210ENST00000494339 MAGI1Q96QZ7 1491 aaPredicted RBP32.92■■■□□ 2.86
KPNA1-210ENST00000494339 RANGAP1P46060 587 aaPredicted RBP32.92■■■□□ 2.86
KPNA1-210ENST00000494339 CLIP1P30622 1438 aa32.84■■■□□ 2.85
KPNA1-210ENST00000494339 CTTNBP2Q8WZ74 1663 aa32.82■■■□□ 2.84
KPNA1-210ENST00000494339 SYNJ2O15056 1496 aa32.81■■■□□ 2.84
KPNA1-210ENST00000494339 CHMP7Q8WUX9 453 aaPredicted RBP32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms