RNA–Protein interactions for RNA: ENST00000494317.1

LCN2-207, Transcript of lipocalin 2, humanhuman

TSL 2

Gene LCN2, Length 625 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCN2-207ENST00000494317 NISCHQ9Y2I1 1504 aa56.87■■■■■ 6.69
LCN2-207ENST00000494317 CCDC180Q9P1Z9 1646 aa50.86■■■■■ 5.73
LCN2-207ENST00000494317 ABCC9O60706 1549 aa50.58■■■■■ 5.69
LCN2-207ENST00000494317 RB1CC1Q8TDY2 1594 aa48.26■■■■■ 5.32
LCN2-207ENST00000494317 NACADO15069 1562 aa48.01■■■■■ 5.28
LCN2-207ENST00000494317 DCAF8L2P0C7V8 631 aa47.86■■■■■ 5.25
LCN2-207ENST00000494317 MYO15BQ96JP2 1530 aa47.46■■■■■ 5.19
LCN2-207ENST00000494317 ZCCHC6Q5VYS8 1495 aaKnown RBP47.21■■■■■ 5.15
LCN2-207ENST00000494317 PABPN1Q86U42 306 aaKnown RBP eCLIP47.15■■■■■ 5.14
LCN2-207ENST00000494317 DNAJC5BQ9UF47 199 aa47.15■■■■■ 5.14
LCN2-207ENST00000494317 UNC13AQ9UPW8 1703 aa47.14■■■■■ 5.14
LCN2-207ENST00000494317 DCAF1Q9Y4B6 1507 aa46.98■■■■■ 5.11
LCN2-207ENST00000494317 BICRAQ9NZM4 1560 aa46.86■■■■■ 5.09
LCN2-207ENST00000494317 SCRIBQ14160 1630 aa46.4■■■■■ 5.02
LCN2-207ENST00000494317 SHROOM4Q9ULL8 1493 aa46.25■■■■■ 4.99
LCN2-207ENST00000494317 CC2D2AQ9P2K1 1620 aa45.69■■■■■ 4.9
LCN2-207ENST00000494317 EIF4G1Q04637 1599 aaKnown RBP45.68■■■■■ 4.9
LCN2-207ENST00000494317 CECR2Q9BXF3 1484 aa45.52■■■■■ 4.88
LCN2-207ENST00000494317 NCAPD3P42695 1498 aa44.33■■■■■ 4.69
LCN2-207ENST00000494317 SMARCA4P51532 1647 aa44.28■■■■■ 4.68
LCN2-207ENST00000494317 ATAD2BQ9ULI0 1458 aa44.26■■■■■ 4.68
LCN2-207ENST00000494317 SMARCA2P51531 1590 aa44.14■■■■■ 4.66
LCN2-207ENST00000494317 BAZ1AQ9NRL2 1556 aaPredicted RBP44.11■■■■■ 4.65
LCN2-207ENST00000494317 HMGXB3Q12766 1538 aa44.03■■■■■ 4.64
LCN2-207ENST00000494317 PEG3Q9GZU2 1588 aa43.84■■■■■ 4.61
LCN2-207ENST00000494317 BAZ1BQ9UIG0 1483 aaKnown RBP43.84■■■■■ 4.61
LCN2-207ENST00000494317 MROH2BQ7Z745 1585 aa43.83■■■■■ 4.61
LCN2-207ENST00000494317 ERCC6Q03468 1493 aa43.64■■■■■ 4.58
LCN2-207ENST00000494317 NESP48681 1621 aa43.55■■■■■ 4.56
LCN2-207ENST00000494317 CUX2O14529 1486 aa43.43■■■■■ 4.54
LCN2-207ENST00000494317 WIZO95785 1651 aa43.3■■■■■ 4.52
LCN2-207ENST00000494317 LAMC3Q9Y6N6 1575 aa43.26■■■■■ 4.52
LCN2-207ENST00000494317 RSF1Q96T23 1441 aaPredicted RBP43.05■■■■■ 4.48
LCN2-207ENST00000494317 DNAJC5Q9H3Z4 198 aa43.03■■■■■ 4.48
LCN2-207ENST00000494317 PDS5BQ9NTI5 1447 aa43.02■■■■■ 4.48
LCN2-207ENST00000494317 THOC2Q8NI27 1593 aaKnown RBP43.02■■■■■ 4.48
LCN2-207ENST00000494317 CADPSQ9ULU8 1353 aa43.01■■■■■ 4.48
LCN2-207ENST00000494317 KIF21AQ7Z4S6 1674 aa42.97■■■■■ 4.47
LCN2-207ENST00000494317 TOP2AP11388 1531 aaKnown RBP42.8■■■■■ 4.44
LCN2-207ENST00000494317 MRC2Q9UBG0 1479 aa42.64■■■■■ 4.42
LCN2-207ENST00000494317 CFTRP13569 1480 aa42.59■■■■■ 4.41
LCN2-207ENST00000494317 CEP164Q9UPV0 1460 aa42.54■■■■■ 4.4
LCN2-207ENST00000494317 FANCD2Q9BXW9 1451 aa42.52■■■■■ 4.4
LCN2-207ENST00000494317 WDR62O43379 1518 aa42.51■■■■■ 4.4
LCN2-207ENST00000494317 CCDC88BA6NC98 1476 aa42.31■■■■■ 4.36
LCN2-207ENST00000494317 URB2Q14146 1524 aaKnown RBP42.15■■■■■ 4.34
LCN2-207ENST00000494317 PRDM2Q13029 1718 aa42.14■■■■■ 4.34
LCN2-207ENST00000494317 TOPBP1Q92547 1522 aa41.75■■■■■ 4.27
LCN2-207ENST00000494317 IFT140Q96RY7 1462 aa41.67■■■■■ 4.26
LCN2-207ENST00000494317 ABCC8Q09428 1581 aa41.67■■■■■ 4.26
LCN2-207ENST00000494317 DNMBPQ6XZF7 1577 aa41.63■■■■■ 4.25
LCN2-207ENST00000494317 ZNF608Q9ULD9 1512 aaPredicted RBP41.59■■■■■ 4.25
LCN2-207ENST00000494317 OSCARQ8IYS5 282 aa41.51■■■■■ 4.24
LCN2-207ENST00000494317 SUPT5HO00267 1087 aaKnown RBP41.41■■■■■ 4.22
LCN2-207ENST00000494317 EIF4G3O43432 1585 aaKnown RBP41.36■■■■■ 4.21
LCN2-207ENST00000494317 POLA1P09884 1462 aaPredicted RBP41.35■■■■■ 4.21
LCN2-207ENST00000494317 TARBP1Q13395 1621 aaKnown RBP41.35■■■■■ 4.21
LCN2-207ENST00000494317 TRIM41Q8WV44 630 aa41.3■■■■■ 4.2
LCN2-207ENST00000494317 AQRO60306 1485 aaKnown RBP eCLIP41.25■■■■■ 4.19
LCN2-207ENST00000494317 RAD54L2Q9Y4B4 1467 aa41.21■■■■■ 4.19
LCN2-207ENST00000494317 SOGA1O94964 1423 aa41.17■■■■■ 4.18
LCN2-207ENST00000494317 CUX1P39880 1505 aa41.16■■■■■ 4.18
LCN2-207ENST00000494317 FGD5Q6ZNL6 1462 aa41.15■■■■■ 4.18
LCN2-207ENST00000494317 TDRD9Q8NDG6 1382 aaKnown RBP41.05■■■■■ 4.16
LCN2-207ENST00000494317 CHD1O14646 1710 aa40.97■■■■■ 4.15
LCN2-207ENST00000494317 WDR97A6NE52 1622 aa40.93■■■■■ 4.14
LCN2-207ENST00000494317 RIMBP3CA6NJZ7 1639 aa40.93■■■■■ 4.14
LCN2-207ENST00000494317 RIMBP3BA6NNM3 1639 aa40.93■■■■■ 4.14
LCN2-207ENST00000494317 RIMBP3Q9UFD9 1639 aa40.93■■■■■ 4.14
LCN2-207ENST00000494317 FBLN2P98095 1184 aa40.91■■■■■ 4.14
LCN2-207ENST00000494317 ARHGEF11O15085 1522 aa40.85■■■■■ 4.13
LCN2-207ENST00000494317 SNAPC4Q5SXM2 1469 aa40.84■■■■■ 4.13
LCN2-207ENST00000494317 GRIN2BQ13224 1484 aa40.77■■■■■ 4.12
LCN2-207ENST00000494317 MAGI1Q96QZ7 1491 aaPredicted RBP40.74■■■■■ 4.11
LCN2-207ENST00000494317 ABCA10Q8WWZ4 1543 aa40.69■■■■■ 4.1
LCN2-207ENST00000494317 GAPVD1Q14C86 1478 aa40.67■■■■■ 4.1
LCN2-207ENST00000494317 CHMP7Q8WUX9 453 aaPredicted RBP40.66■■■■■ 4.1
LCN2-207ENST00000494317 PBRM1Q86U86 1689 aa40.61■■■■■ 4.09
LCN2-207ENST00000494317 WRNQ14191 1432 aaPredicted RBP eCLIP40.6■■■■■ 4.09
LCN2-207ENST00000494317 SYNJ2O15056 1496 aa40.6■■■■■ 4.09
LCN2-207ENST00000494317 ABCA5Q8WWZ7 1642 aa40.6■■■■■ 4.09
LCN2-207ENST00000494317 TOP2BQ02880 1626 aa40.58■■■■■ 4.09
LCN2-207ENST00000494317 BIVM-ERCC5R4GMW8 1640 aa40.57■■■■■ 4.09
LCN2-207ENST00000494317 SYNJ1O43426 1573 aa40.56■■■■■ 4.08
LCN2-207ENST00000494317 CLASP1Q7Z460 1538 aa40.53■■■■■ 4.08
LCN2-207ENST00000494317 CYB5RLQ6IPT4 315 aa40.53■■■■■ 4.08
LCN2-207ENST00000494317 ARAP1Q96P48 1450 aa40.48■■■■■ 4.07
LCN2-207ENST00000494317 ADAMTS12P58397 1594 aa40.27■■■■■ 4.04
LCN2-207ENST00000494317 GRIN2AQ12879 1464 aa40.25■■■■■ 4.03
LCN2-207ENST00000494317 ERICH3Q5RHP9 1530 aa40.18■■■■■ 4.02
LCN2-207ENST00000494317 FHAD1B1AJZ9 1412 aa40.17■■■■■ 4.02
LCN2-207ENST00000494317 NUP160Q12769 1436 aa40.1■■■■■ 4.01
LCN2-207ENST00000494317 CEP170Q5SW79 1584 aa40.09■■■■■ 4.01
LCN2-207ENST00000494317 TRHP20396 242 aaPredicted RBP39.96■■■■□ 3.99
LCN2-207ENST00000494317 ERCC6L2Q5T890 1561 aa39.94■■■■□ 3.98
LCN2-207ENST00000494317 SHROOM2Q13796 1616 aa39.87■■■■□ 3.97
LCN2-207ENST00000494317 KIF27Q86VH2 1401 aa39.81■■■■□ 3.96
LCN2-207ENST00000494317 IGF1RP08069 1367 aa39.76■■■■□ 3.96
LCN2-207ENST00000494317 RUSC2Q8N2Y8 1516 aa39.7■■■■□ 3.95
LCN2-207ENST00000494317 PRG4Q92954 1404 aaPredicted RBP39.69■■■■□ 3.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms