RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 NISCHQ9Y2I1 1504 aa26.69■■□□□ 1.86
MCF2L-231ENST00000494043 CCDC180Q9P1Z9 1646 aa23.48■■□□□ 1.35
MCF2L-231ENST00000494043 ABCC9O60706 1549 aa22.43■■□□□ 1.18
MCF2L-231ENST00000494043 ZCCHC6Q5VYS8 1495 aaKnown RBP22.37■■□□□ 1.17
MCF2L-231ENST00000494043 DCAF1Q9Y4B6 1507 aa22.11■■□□□ 1.13
MCF2L-231ENST00000494043 DCAF8L2P0C7V8 631 aa22.02■■□□□ 1.12
MCF2L-231ENST00000494043 MYO15BQ96JP2 1530 aa21.99■■□□□ 1.11
MCF2L-231ENST00000494043 NACADO15069 1562 aa21.93■■□□□ 1.1
MCF2L-231ENST00000494043 RB1CC1Q8TDY2 1594 aa21.82■■□□□ 1.08
MCF2L-231ENST00000494043 SCRIBQ14160 1630 aa21.48■■□□□ 1.03
MCF2L-231ENST00000494043 SHROOM4Q9ULL8 1493 aa21.43■■□□□ 1.02
MCF2L-231ENST00000494043 UNC13AQ9UPW8 1703 aa21.32■■□□□ 1
MCF2L-231ENST00000494043 BICRAQ9NZM4 1560 aa21.15■□□□□ 0.98
MCF2L-231ENST00000494043 PABPN1Q86U42 306 aaKnown RBP eCLIP21.04■□□□□ 0.96
MCF2L-231ENST00000494043 CECR2Q9BXF3 1484 aa20.73■□□□□ 0.91
MCF2L-231ENST00000494043 BAZ1AQ9NRL2 1556 aaPredicted RBP20.64■□□□□ 0.9
MCF2L-231ENST00000494043 SMARCA4P51532 1647 aa20.6■□□□□ 0.89
MCF2L-231ENST00000494043 MROH2BQ7Z745 1585 aa20.59■□□□□ 0.89
MCF2L-231ENST00000494043 RSF1Q96T23 1441 aaPredicted RBP20.55■□□□□ 0.88
MCF2L-231ENST00000494043 EIF4G1Q04637 1599 aaKnown RBP20.55■□□□□ 0.88
MCF2L-231ENST00000494043 SUPT5HO00267 1087 aaKnown RBP20.43■□□□□ 0.86
MCF2L-231ENST00000494043 WIZO95785 1651 aa20.38■□□□□ 0.85
MCF2L-231ENST00000494043 PEG3Q9GZU2 1588 aa20.38■□□□□ 0.85
MCF2L-231ENST00000494043 SMARCA2P51531 1590 aa20.34■□□□□ 0.85
MCF2L-231ENST00000494043 ATAD2BQ9ULI0 1458 aa20.33■□□□□ 0.85
MCF2L-231ENST00000494043 CC2D2AQ9P2K1 1620 aa20.31■□□□□ 0.84
MCF2L-231ENST00000494043 NCAPD3P42695 1498 aa20.23■□□□□ 0.83
MCF2L-231ENST00000494043 TOP2AP11388 1531 aaKnown RBP20.22■□□□□ 0.83
MCF2L-231ENST00000494043 BAZ1BQ9UIG0 1483 aaKnown RBP20.2■□□□□ 0.82
MCF2L-231ENST00000494043 HMGXB3Q12766 1538 aa20.2■□□□□ 0.82
MCF2L-231ENST00000494043 DNAJC5BQ9UF47 199 aa20.05■□□□□ 0.8
MCF2L-231ENST00000494043 CCDC88BA6NC98 1476 aa19.96■□□□□ 0.79
MCF2L-231ENST00000494043 CFTRP13569 1480 aa19.68■□□□□ 0.74
MCF2L-231ENST00000494043 CADPSQ9ULU8 1353 aa19.67■□□□□ 0.74
MCF2L-231ENST00000494043 LAMC3Q9Y6N6 1575 aa19.61■□□□□ 0.73
MCF2L-231ENST00000494043 AEBP2Q6ZN18 517 aaPredicted RBP19.59■□□□□ 0.73
MCF2L-231ENST00000494043 NESP48681 1621 aa19.58■□□□□ 0.73
MCF2L-231ENST00000494043 PRDM2Q13029 1718 aa19.56■□□□□ 0.72
MCF2L-231ENST00000494043 PDS5BQ9NTI5 1447 aa19.45■□□□□ 0.7
MCF2L-231ENST00000494043 FANCD2Q9BXW9 1451 aa19.45■□□□□ 0.7
MCF2L-231ENST00000494043 ABCC8Q09428 1581 aa19.41■□□□□ 0.7
MCF2L-231ENST00000494043 CHIC1Q5VXU3 224 aa19.4■□□□□ 0.7
MCF2L-231ENST00000494043 CEP164Q9UPV0 1460 aa19.38■□□□□ 0.69
MCF2L-231ENST00000494043 KIF21AQ7Z4S6 1674 aa19.36■□□□□ 0.69
MCF2L-231ENST00000494043 WRNQ14191 1432 aaPredicted RBP eCLIP19.35■□□□□ 0.69
MCF2L-231ENST00000494043 SYNJ1O43426 1573 aa19.29■□□□□ 0.68
MCF2L-231ENST00000494043 CUX1P39880 1505 aa19.29■□□□□ 0.68
MCF2L-231ENST00000494043 ERCC6Q03468 1493 aa19.28■□□□□ 0.68
MCF2L-231ENST00000494043 TRIM41Q8WV44 630 aa19.26■□□□□ 0.67
MCF2L-231ENST00000494043 TOP2BQ02880 1626 aa19.25■□□□□ 0.67
MCF2L-231ENST00000494043 BIVM-ERCC5R4GMW8 1640 aa19.25■□□□□ 0.67
MCF2L-231ENST00000494043 DNMBPQ6XZF7 1577 aa19.24■□□□□ 0.67
MCF2L-231ENST00000494043 URB2Q14146 1524 aaKnown RBP19.24■□□□□ 0.67
MCF2L-231ENST00000494043 MRC2Q9UBG0 1479 aa19.23■□□□□ 0.67
MCF2L-231ENST00000494043 TOPBP1Q92547 1522 aa19.2■□□□□ 0.66
MCF2L-231ENST00000494043 THOC2Q8NI27 1593 aaKnown RBP19.18■□□□□ 0.66
MCF2L-231ENST00000494043 WDR62O43379 1518 aa19.15■□□□□ 0.66
MCF2L-231ENST00000494043 FGD5Q6ZNL6 1462 aa19.12■□□□□ 0.65
MCF2L-231ENST00000494043 POLA1P09884 1462 aaPredicted RBP19.09■□□□□ 0.65
MCF2L-231ENST00000494043 SOGA1O94964 1423 aa19■□□□□ 0.63
MCF2L-231ENST00000494043 CUX2O14529 1486 aa18.99■□□□□ 0.63
MCF2L-231ENST00000494043 RAD54L2Q9Y4B4 1467 aa18.99■□□□□ 0.63
MCF2L-231ENST00000494043 ABCA10Q8WWZ4 1543 aa18.96■□□□□ 0.63
MCF2L-231ENST00000494043 TARBP1Q13395 1621 aaKnown RBP18.96■□□□□ 0.63
MCF2L-231ENST00000494043 IFT140Q96RY7 1462 aa18.95■□□□□ 0.62
MCF2L-231ENST00000494043 WDR97A6NE52 1622 aa18.94■□□□□ 0.62
MCF2L-231ENST00000494043 EEA1Q15075 1411 aa18.92■□□□□ 0.62
MCF2L-231ENST00000494043 KIF27Q86VH2 1401 aa18.91■□□□□ 0.62
MCF2L-231ENST00000494043 RUSC2Q8N2Y8 1516 aa18.9■□□□□ 0.62
MCF2L-231ENST00000494043 FAM9AQ8IZU1 332 aaPredicted RBP18.86■□□□□ 0.61
MCF2L-231ENST00000494043 ABCA5Q8WWZ7 1642 aa18.85■□□□□ 0.61
MCF2L-231ENST00000494043 TDRD9Q8NDG6 1382 aaKnown RBP18.82■□□□□ 0.6
MCF2L-231ENST00000494043 ZNF608Q9ULD9 1512 aaPredicted RBP18.82■□□□□ 0.6
MCF2L-231ENST00000494043 GAPVD1Q14C86 1478 aa18.8■□□□□ 0.6
MCF2L-231ENST00000494043 CSRNP3Q8WYN3 585 aa18.78■□□□□ 0.6
MCF2L-231ENST00000494043 AQRO60306 1485 aaKnown RBP eCLIP18.77■□□□□ 0.6
MCF2L-231ENST00000494043 EIF4G3O43432 1585 aaKnown RBP18.77■□□□□ 0.6
MCF2L-231ENST00000494043 IGF1RP08069 1367 aa18.75■□□□□ 0.59
MCF2L-231ENST00000494043 ERICH3Q5RHP9 1530 aa18.74■□□□□ 0.59
MCF2L-231ENST00000494043 PBRM1Q86U86 1689 aa18.73■□□□□ 0.59
MCF2L-231ENST00000494043 GRIN2BQ13224 1484 aa18.72■□□□□ 0.59
MCF2L-231ENST00000494043 PRXQ9BXM0 1461 aa18.7■□□□□ 0.58
MCF2L-231ENST00000494043 KIF21BO75037 1637 aa18.69■□□□□ 0.58
MCF2L-231ENST00000494043 CUL7Q14999 1698 aa18.69■□□□□ 0.58
MCF2L-231ENST00000494043 CARMIL1Q5VZK9 1371 aa18.65■□□□□ 0.58
MCF2L-231ENST00000494043 GOLGA3Q08378 1498 aa18.64■□□□□ 0.57
MCF2L-231ENST00000494043 ADAMTS12P58397 1594 aa18.64■□□□□ 0.57
MCF2L-231ENST00000494043 SNAPC4Q5SXM2 1469 aa18.63■□□□□ 0.57
MCF2L-231ENST00000494043 MAGI1Q96QZ7 1491 aaPredicted RBP18.62■□□□□ 0.57
MCF2L-231ENST00000494043 RAPGEF2Q9Y4G8 1499 aa18.61■□□□□ 0.57
MCF2L-231ENST00000494043 FHAD1B1AJZ9 1412 aa18.61■□□□□ 0.57
MCF2L-231ENST00000494043 LOC105371045A0A1W2PR82 267 aa18.6■□□□□ 0.57
MCF2L-231ENST00000494043 EHMT2Q96KQ7 1210 aa18.57■□□□□ 0.56
MCF2L-231ENST00000494043 SYNJ2O15056 1496 aa18.53■□□□□ 0.56
MCF2L-231ENST00000494043 UBTFP17480 764 aaKnown RBP18.49■□□□□ 0.55
MCF2L-231ENST00000494043 TNIKQ9UKE5 1360 aa18.49■□□□□ 0.55
MCF2L-231ENST00000494043 GRIN2AQ12879 1464 aa18.49■□□□□ 0.55
MCF2L-231ENST00000494043 CHMP7Q8WUX9 453 aaPredicted RBP18.45■□□□□ 0.54
MCF2L-231ENST00000494043 FBLN2P98095 1184 aa18.42■□□□□ 0.54
MCF2L-231ENST00000494043 CHD1O14646 1710 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms