RNA–Protein interactions for RNA: ENST00000493916.1

SNIP1-203, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 4

Gene SNIP1, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-203ENST00000493916 NISCHQ9Y2I1 1504 aa55.56■■■■■ 6.48
SNIP1-203ENST00000493916 CCDC180Q9P1Z9 1646 aa49.55■■■■■ 5.52
SNIP1-203ENST00000493916 ABCC9O60706 1549 aa48.6■■■■■ 5.37
SNIP1-203ENST00000493916 RB1CC1Q8TDY2 1594 aa46.72■■■■■ 5.07
SNIP1-203ENST00000493916 NACADO15069 1562 aa46.62■■■■■ 5.05
SNIP1-203ENST00000493916 DCAF8L2P0C7V8 631 aa46.32■■■■■ 5.01
SNIP1-203ENST00000493916 MYO15BQ96JP2 1530 aa46.31■■■■■ 5
SNIP1-203ENST00000493916 ZCCHC6Q5VYS8 1495 aaKnown RBP46.25■■■■■ 5
SNIP1-203ENST00000493916 DCAF1Q9Y4B6 1507 aa46.02■■■■■ 4.96
SNIP1-203ENST00000493916 UNC13AQ9UPW8 1703 aa45.63■■■■■ 4.89
SNIP1-203ENST00000493916 PABPN1Q86U42 306 aaKnown RBP eCLIP45.32■■■■■ 4.85
SNIP1-203ENST00000493916 BICRAQ9NZM4 1560 aa45.31■■■■■ 4.84
SNIP1-203ENST00000493916 SCRIBQ14160 1630 aa45.12■■■■■ 4.81
SNIP1-203ENST00000493916 SHROOM4Q9ULL8 1493 aa44.9■■■■■ 4.78
SNIP1-203ENST00000493916 DNAJC5BQ9UF47 199 aa44.78■■■■■ 4.76
SNIP1-203ENST00000493916 EIF4G1Q04637 1599 aaKnown RBP44.13■■■■■ 4.65
SNIP1-203ENST00000493916 CC2D2AQ9P2K1 1620 aa43.99■■■■■ 4.63
SNIP1-203ENST00000493916 CECR2Q9BXF3 1484 aa43.72■■■■■ 4.59
SNIP1-203ENST00000493916 SMARCA4P51532 1647 aa43.17■■■■■ 4.5
SNIP1-203ENST00000493916 BAZ1AQ9NRL2 1556 aaPredicted RBP43.09■■■■■ 4.49
SNIP1-203ENST00000493916 NCAPD3P42695 1498 aa43■■■■■ 4.47
SNIP1-203ENST00000493916 ATAD2BQ9ULI0 1458 aa42.98■■■■■ 4.47
SNIP1-203ENST00000493916 SMARCA2P51531 1590 aa42.94■■■■■ 4.46
SNIP1-203ENST00000493916 HMGXB3Q12766 1538 aa42.81■■■■■ 4.44
SNIP1-203ENST00000493916 PEG3Q9GZU2 1588 aa42.79■■■■■ 4.44
SNIP1-203ENST00000493916 MROH2BQ7Z745 1585 aa42.78■■■■■ 4.44
SNIP1-203ENST00000493916 BAZ1BQ9UIG0 1483 aaKnown RBP42.61■■■■■ 4.41
SNIP1-203ENST00000493916 WIZO95785 1651 aa42.3■■■■■ 4.36
SNIP1-203ENST00000493916 RSF1Q96T23 1441 aaPredicted RBP42.21■■■■■ 4.35
SNIP1-203ENST00000493916 NESP48681 1621 aa41.99■■■■■ 4.31
SNIP1-203ENST00000493916 ERCC6Q03468 1493 aa41.92■■■■■ 4.3
SNIP1-203ENST00000493916 LAMC3Q9Y6N6 1575 aa41.92■■■■■ 4.3
SNIP1-203ENST00000493916 TOP2AP11388 1531 aaKnown RBP41.9■■■■■ 4.3
SNIP1-203ENST00000493916 CADPSQ9ULU8 1353 aa41.71■■■■■ 4.27
SNIP1-203ENST00000493916 CUX2O14529 1486 aa41.63■■■■■ 4.25
SNIP1-203ENST00000493916 PDS5BQ9NTI5 1447 aa41.61■■■■■ 4.25
SNIP1-203ENST00000493916 KIF21AQ7Z4S6 1674 aa41.52■■■■■ 4.24
SNIP1-203ENST00000493916 THOC2Q8NI27 1593 aaKnown RBP41.48■■■■■ 4.23
SNIP1-203ENST00000493916 CFTRP13569 1480 aa41.44■■■■■ 4.22
SNIP1-203ENST00000493916 CCDC88BA6NC98 1476 aa41.35■■■■■ 4.21
SNIP1-203ENST00000493916 FANCD2Q9BXW9 1451 aa41.24■■■■■ 4.19
SNIP1-203ENST00000493916 MRC2Q9UBG0 1479 aa41.22■■■■■ 4.19
SNIP1-203ENST00000493916 CEP164Q9UPV0 1460 aa41.22■■■■■ 4.19
SNIP1-203ENST00000493916 PRDM2Q13029 1718 aa41.13■■■■■ 4.17
SNIP1-203ENST00000493916 WDR62O43379 1518 aa41.12■■■■■ 4.17
SNIP1-203ENST00000493916 URB2Q14146 1524 aaKnown RBP40.85■■■■■ 4.13
SNIP1-203ENST00000493916 SUPT5HO00267 1087 aaKnown RBP40.83■■■■■ 4.13
SNIP1-203ENST00000493916 TOPBP1Q92547 1522 aa40.56■■■■■ 4.08
SNIP1-203ENST00000493916 ABCC8Q09428 1581 aa40.56■■■■■ 4.08
SNIP1-203ENST00000493916 DNAJC5Q9H3Z4 198 aa40.55■■■■■ 4.08
SNIP1-203ENST00000493916 DNMBPQ6XZF7 1577 aa40.52■■■■■ 4.08
SNIP1-203ENST00000493916 IFT140Q96RY7 1462 aa40.38■■■■■ 4.05
SNIP1-203ENST00000493916 POLA1P09884 1462 aaPredicted RBP40.19■■■■■ 4.03
SNIP1-203ENST00000493916 ZNF608Q9ULD9 1512 aaPredicted RBP40.18■■■■■ 4.02
SNIP1-203ENST00000493916 CUX1P39880 1505 aa40.17■■■■■ 4.02
SNIP1-203ENST00000493916 TARBP1Q13395 1621 aaKnown RBP40.16■■■■■ 4.02
SNIP1-203ENST00000493916 FGD5Q6ZNL6 1462 aa40.06■■■■■ 4
SNIP1-203ENST00000493916 EIF4G3O43432 1585 aaKnown RBP40.06■■■■■ 4
SNIP1-203ENST00000493916 SOGA1O94964 1423 aa39.99■■■■□ 3.99
SNIP1-203ENST00000493916 RAD54L2Q9Y4B4 1467 aa39.99■■■■□ 3.99
SNIP1-203ENST00000493916 AQRO60306 1485 aaKnown RBP eCLIP39.9■■■■□ 3.98
SNIP1-203ENST00000493916 WDR97A6NE52 1622 aa39.88■■■■□ 3.97
SNIP1-203ENST00000493916 WRNQ14191 1432 aaPredicted RBP eCLIP39.81■■■■□ 3.96
SNIP1-203ENST00000493916 BIVM-ERCC5R4GMW8 1640 aa39.79■■■■□ 3.96
SNIP1-203ENST00000493916 TOP2BQ02880 1626 aa39.78■■■■□ 3.96
SNIP1-203ENST00000493916 TDRD9Q8NDG6 1382 aaKnown RBP39.77■■■■□ 3.96
SNIP1-203ENST00000493916 OSCARQ8IYS5 282 aa39.77■■■■□ 3.96
SNIP1-203ENST00000493916 SYNJ1O43426 1573 aa39.74■■■■□ 3.95
SNIP1-203ENST00000493916 ABCA10Q8WWZ4 1543 aa39.69■■■■□ 3.94
SNIP1-203ENST00000493916 GRIN2BQ13224 1484 aa39.6■■■■□ 3.93
SNIP1-203ENST00000493916 ABCA5Q8WWZ7 1642 aa39.57■■■■□ 3.92
SNIP1-203ENST00000493916 CHD1O14646 1710 aa39.57■■■■□ 3.92
SNIP1-203ENST00000493916 SNAPC4Q5SXM2 1469 aa39.56■■■■□ 3.92
SNIP1-203ENST00000493916 GAPVD1Q14C86 1478 aa39.56■■■■□ 3.92
SNIP1-203ENST00000493916 MAGI1Q96QZ7 1491 aaPredicted RBP39.54■■■■□ 3.92
SNIP1-203ENST00000493916 PBRM1Q86U86 1689 aa39.51■■■■□ 3.91
SNIP1-203ENST00000493916 FBLN2P98095 1184 aa39.39■■■■□ 3.9
SNIP1-203ENST00000493916 SYNJ2O15056 1496 aa39.37■■■■□ 3.89
SNIP1-203ENST00000493916 CHMP7Q8WUX9 453 aaPredicted RBP39.29■■■■□ 3.88
SNIP1-203ENST00000493916 ERICH3Q5RHP9 1530 aa39.22■■■■□ 3.87
SNIP1-203ENST00000493916 RIMBP3CA6NJZ7 1639 aa39.22■■■■□ 3.87
SNIP1-203ENST00000493916 RIMBP3BA6NNM3 1639 aa39.22■■■■□ 3.87
SNIP1-203ENST00000493916 RIMBP3Q9UFD9 1639 aa39.22■■■■□ 3.87
SNIP1-203ENST00000493916 ADAMTS12P58397 1594 aa39.21■■■■□ 3.87
SNIP1-203ENST00000493916 ARHGEF11O15085 1522 aa39.19■■■■□ 3.86
SNIP1-203ENST00000493916 CLASP1Q7Z460 1538 aa39.18■■■■□ 3.86
SNIP1-203ENST00000493916 FHAD1B1AJZ9 1412 aa39.1■■■■□ 3.85
SNIP1-203ENST00000493916 GRIN2AQ12879 1464 aa39.09■■■■□ 3.85
SNIP1-203ENST00000493916 TRIM41Q8WV44 630 aa39.05■■■■□ 3.84
SNIP1-203ENST00000493916 KIF27Q86VH2 1401 aa38.99■■■■□ 3.83
SNIP1-203ENST00000493916 NUP160Q12769 1436 aa38.94■■■■□ 3.82
SNIP1-203ENST00000493916 CEP170Q5SW79 1584 aa38.91■■■■□ 3.82
SNIP1-203ENST00000493916 ARAP1Q96P48 1450 aa38.86■■■■□ 3.81
SNIP1-203ENST00000493916 IGF1RP08069 1367 aa38.84■■■■□ 3.81
SNIP1-203ENST00000493916 CUL7Q14999 1698 aa38.82■■■■□ 3.81
SNIP1-203ENST00000493916 CYB5RLQ6IPT4 315 aa38.74■■■■□ 3.79
SNIP1-203ENST00000493916 SHROOM2Q13796 1616 aa38.69■■■■□ 3.78
SNIP1-203ENST00000493916 RUSC2Q8N2Y8 1516 aa38.63■■■■□ 3.78
SNIP1-203ENST00000493916 CARMIL1Q5VZK9 1371 aa38.6■■■■□ 3.77
SNIP1-203ENST00000493916 ERCC6L2Q5T890 1561 aa38.57■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms