RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 NISCHQ9Y2I1 1504 aa45.51■■■■■ 4.88
USP39-218ENST00000493829 CCDC180Q9P1Z9 1646 aa40.09■■■■■ 4.01
USP39-218ENST00000493829 ABCC9O60706 1549 aa38.58■■■■□ 3.77
USP39-218ENST00000493829 ZCCHC6Q5VYS8 1495 aaKnown RBP38.1■■■■□ 3.69
USP39-218ENST00000493829 DCAF8L2P0C7V8 631 aa37.84■■■■□ 3.65
USP39-218ENST00000493829 DCAF1Q9Y4B6 1507 aa37.58■■■■□ 3.61
USP39-218ENST00000493829 NACADO15069 1562 aa37.45■■■■□ 3.59
USP39-218ENST00000493829 MYO15BQ96JP2 1530 aa37.39■■■■□ 3.58
USP39-218ENST00000493829 RB1CC1Q8TDY2 1594 aa37.35■■■■□ 3.57
USP39-218ENST00000493829 SCRIBQ14160 1630 aa36.83■■■■□ 3.49
USP39-218ENST00000493829 SHROOM4Q9ULL8 1493 aa36.7■■■■□ 3.46
USP39-218ENST00000493829 UNC13AQ9UPW8 1703 aa36.63■■■■□ 3.45
USP39-218ENST00000493829 BICRAQ9NZM4 1560 aa36.23■■■■□ 3.39
USP39-218ENST00000493829 PABPN1Q86U42 306 aaKnown RBP eCLIP36.19■■■■□ 3.38
USP39-218ENST00000493829 CECR2Q9BXF3 1484 aa35.45■■■■□ 3.26
USP39-218ENST00000493829 BAZ1AQ9NRL2 1556 aaPredicted RBP35.22■■■■□ 3.23
USP39-218ENST00000493829 EIF4G1Q04637 1599 aaKnown RBP35.21■■■■□ 3.23
USP39-218ENST00000493829 SMARCA4P51532 1647 aa35.2■■■■□ 3.22
USP39-218ENST00000493829 MROH2BQ7Z745 1585 aa35.16■■■■□ 3.22
USP39-218ENST00000493829 RSF1Q96T23 1441 aaPredicted RBP35■■■■□ 3.19
USP39-218ENST00000493829 CC2D2AQ9P2K1 1620 aa34.89■■■■□ 3.18
USP39-218ENST00000493829 WIZO95785 1651 aa34.88■■■■□ 3.17
USP39-218ENST00000493829 SUPT5HO00267 1087 aaKnown RBP34.87■■■■□ 3.17
USP39-218ENST00000493829 ATAD2BQ9ULI0 1458 aa34.74■■■■□ 3.15
USP39-218ENST00000493829 PEG3Q9GZU2 1588 aa34.73■■■■□ 3.15
USP39-218ENST00000493829 SMARCA2P51531 1590 aa34.72■■■■□ 3.15
USP39-218ENST00000493829 DNAJC5BQ9UF47 199 aa34.6■■■■□ 3.13
USP39-218ENST00000493829 BAZ1BQ9UIG0 1483 aaKnown RBP34.55■■■■□ 3.12
USP39-218ENST00000493829 NCAPD3P42695 1498 aa34.52■■■■□ 3.12
USP39-218ENST00000493829 HMGXB3Q12766 1538 aa34.48■■■■□ 3.11
USP39-218ENST00000493829 TOP2AP11388 1531 aaKnown RBP34.47■■■■□ 3.11
USP39-218ENST00000493829 CCDC88BA6NC98 1476 aa34.06■■■■□ 3.04
USP39-218ENST00000493829 NESP48681 1621 aa33.63■■■□□ 2.97
USP39-218ENST00000493829 CADPSQ9ULU8 1353 aa33.6■■■□□ 2.97
USP39-218ENST00000493829 CFTRP13569 1480 aa33.58■■■□□ 2.97
USP39-218ENST00000493829 LAMC3Q9Y6N6 1575 aa33.54■■■□□ 2.96
USP39-218ENST00000493829 PRDM2Q13029 1718 aa33.48■■■□□ 2.95
USP39-218ENST00000493829 FANCD2Q9BXW9 1451 aa33.29■■■□□ 2.92
USP39-218ENST00000493829 KIF21AQ7Z4S6 1674 aa33.27■■■□□ 2.92
USP39-218ENST00000493829 PDS5BQ9NTI5 1447 aa33.26■■■□□ 2.92
USP39-218ENST00000493829 ABCC8Q09428 1581 aa33.19■■■□□ 2.9
USP39-218ENST00000493829 CEP164Q9UPV0 1460 aa33.18■■■□□ 2.9
USP39-218ENST00000493829 ERCC6Q03468 1493 aa33.16■■■□□ 2.9
USP39-218ENST00000493829 WRNQ14191 1432 aaPredicted RBP eCLIP33■■■□□ 2.87
USP39-218ENST00000493829 SYNJ1O43426 1573 aa32.95■■■□□ 2.87
USP39-218ENST00000493829 CUX1P39880 1505 aa32.94■■■□□ 2.86
USP39-218ENST00000493829 MRC2Q9UBG0 1479 aa32.93■■■□□ 2.86
USP39-218ENST00000493829 URB2Q14146 1524 aaKnown RBP32.93■■■□□ 2.86
USP39-218ENST00000493829 CHIC1Q5VXU3 224 aa32.92■■■□□ 2.86
USP39-218ENST00000493829 THOC2Q8NI27 1593 aaKnown RBP32.9■■■□□ 2.86
USP39-218ENST00000493829 DNMBPQ6XZF7 1577 aa32.87■■■□□ 2.85
USP39-218ENST00000493829 TOPBP1Q92547 1522 aa32.85■■■□□ 2.85
USP39-218ENST00000493829 TOP2BQ02880 1626 aa32.84■■■□□ 2.85
USP39-218ENST00000493829 BIVM-ERCC5R4GMW8 1640 aa32.84■■■□□ 2.85
USP39-218ENST00000493829 TRIM41Q8WV44 630 aa32.8■■■□□ 2.84
USP39-218ENST00000493829 WDR62O43379 1518 aa32.79■■■□□ 2.84
USP39-218ENST00000493829 FGD5Q6ZNL6 1462 aa32.7■■■□□ 2.83
USP39-218ENST00000493829 POLA1P09884 1462 aaPredicted RBP32.63■■■□□ 2.81
USP39-218ENST00000493829 RAD54L2Q9Y4B4 1467 aa32.53■■■□□ 2.8
USP39-218ENST00000493829 CUX2O14529 1486 aa32.5■■■□□ 2.79
USP39-218ENST00000493829 SOGA1O94964 1423 aa32.48■■■□□ 2.79
USP39-218ENST00000493829 TARBP1Q13395 1621 aaKnown RBP32.43■■■□□ 2.78
USP39-218ENST00000493829 WDR97A6NE52 1622 aa32.39■■■□□ 2.78
USP39-218ENST00000493829 IFT140Q96RY7 1462 aa32.39■■■□□ 2.77
USP39-218ENST00000493829 ABCA10Q8WWZ4 1543 aa32.34■■■□□ 2.77
USP39-218ENST00000493829 RUSC2Q8N2Y8 1516 aa32.29■■■□□ 2.76
USP39-218ENST00000493829 ZNF608Q9ULD9 1512 aaPredicted RBP32.27■■■□□ 2.76
USP39-218ENST00000493829 FAM9AQ8IZU1 332 aaPredicted RBP32.25■■■□□ 2.75
USP39-218ENST00000493829 TDRD9Q8NDG6 1382 aaKnown RBP32.25■■■□□ 2.75
USP39-218ENST00000493829 KIF27Q86VH2 1401 aa32.21■■■□□ 2.75
USP39-218ENST00000493829 ABCA5Q8WWZ7 1642 aa32.21■■■□□ 2.75
USP39-218ENST00000493829 EIF4G3O43432 1585 aaKnown RBP32.2■■■□□ 2.75
USP39-218ENST00000493829 AQRO60306 1485 aaKnown RBP eCLIP32.18■■■□□ 2.742e-6■■■■□ 20.3
USP39-218ENST00000493829 GAPVD1Q14C86 1478 aa32.14■■■□□ 2.73
USP39-218ENST00000493829 PBRM1Q86U86 1689 aa32.1■■■□□ 2.73
USP39-218ENST00000493829 EEA1Q15075 1411 aa32.09■■■□□ 2.73
USP39-218ENST00000493829 GRIN2BQ13224 1484 aa31.99■■■□□ 2.71
USP39-218ENST00000493829 ERICH3Q5RHP9 1530 aa31.97■■■□□ 2.71
USP39-218ENST00000493829 CSRNP3Q8WYN3 585 aa31.95■■■□□ 2.71
USP39-218ENST00000493829 IGF1RP08069 1367 aa31.95■■■□□ 2.71
USP39-218ENST00000493829 SNAPC4Q5SXM2 1469 aa31.92■■■□□ 2.7
USP39-218ENST00000493829 EHMT2Q96KQ7 1210 aa31.89■■■□□ 2.7
USP39-218ENST00000493829 CUL7Q14999 1698 aa31.89■■■□□ 2.69
USP39-218ENST00000493829 ADAMTS12P58397 1594 aa31.86■■■□□ 2.69
USP39-218ENST00000493829 MAGI1Q96QZ7 1491 aaPredicted RBP31.81■■■□□ 2.68
USP39-218ENST00000493829 CARMIL1Q5VZK9 1371 aa31.8■■■□□ 2.68
USP39-218ENST00000493829 PRXQ9BXM0 1461 aa31.79■■■□□ 2.68
USP39-218ENST00000493829 KIF21BO75037 1637 aa31.79■■■□□ 2.68
USP39-218ENST00000493829 FHAD1B1AJZ9 1412 aa31.76■■■□□ 2.67
USP39-218ENST00000493829 RAPGEF2Q9Y4G8 1499 aa31.74■■■□□ 2.67
USP39-218ENST00000493829 SYNJ2O15056 1496 aa31.69■■■□□ 2.66
USP39-218ENST00000493829 GOLGA3Q08378 1498 aa31.68■■■□□ 2.66
USP39-218ENST00000493829 FBLN2P98095 1184 aa31.67■■■□□ 2.66
USP39-218ENST00000493829 LOC105371045A0A1W2PR82 267 aa31.67■■■□□ 2.66
USP39-218ENST00000493829 CHD1O14646 1710 aa31.66■■■□□ 2.66
USP39-218ENST00000493829 GRIN2AQ12879 1464 aa31.62■■■□□ 2.65
USP39-218ENST00000493829 CHMP7Q8WUX9 453 aaPredicted RBP31.62■■■□□ 2.65
USP39-218ENST00000493829 UBTFP17480 764 aaKnown RBP31.54■■■□□ 2.64
USP39-218ENST00000493829 CEP170Q5SW79 1584 aa31.48■■■□□ 2.63
USP39-218ENST00000493829 CTTNBP2Q8WZ74 1663 aa31.47■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms