RNA–Protein interactions for RNA: ENST00000493648.1

TOP3A-207, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 503 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-207ENST00000493648 NISCHQ9Y2I1 1504 aa16.89■□□□□ 0.29
TOP3A-207ENST00000493648 AEBP2Q6ZN18 517 aaPredicted RBP15.38■□□□□ 0.05
TOP3A-207ENST00000493648 CCDC180Q9P1Z9 1646 aa15.02□□□□□ -0.01
TOP3A-207ENST00000493648 ABCC9O60706 1549 aa14.76□□□□□ -0.05
TOP3A-207ENST00000493648 CHIC1Q5VXU3 224 aa14.35□□□□□ -0.11
TOP3A-207ENST00000493648 DCAF8L2P0C7V8 631 aa14.24□□□□□ -0.13
TOP3A-207ENST00000493648 RB1CC1Q8TDY2 1594 aa14.19□□□□□ -0.14
TOP3A-207ENST00000493648 NACADO15069 1562 aa14.16□□□□□ -0.14
TOP3A-207ENST00000493648 MYO15BQ96JP2 1530 aa14.05□□□□□ -0.16
TOP3A-207ENST00000493648 ZCCHC6Q5VYS8 1495 aaKnown RBP14.02□□□□□ -0.16
TOP3A-207ENST00000493648 DCAF1Q9Y4B6 1507 aa13.96□□□□□ -0.17
TOP3A-207ENST00000493648 PABPN1Q86U42 306 aaKnown RBP eCLIP13.84□□□□□ -0.19
TOP3A-207ENST00000493648 UNC13AQ9UPW8 1703 aa13.83□□□□□ -0.2
TOP3A-207ENST00000493648 BICRAQ9NZM4 1560 aa13.72□□□□□ -0.21
TOP3A-207ENST00000493648 SCRIBQ14160 1630 aa13.7□□□□□ -0.22
TOP3A-207ENST00000493648 DNAJC5BQ9UF47 199 aa13.62□□□□□ -0.23
TOP3A-207ENST00000493648 SHROOM4Q9ULL8 1493 aa13.6□□□□□ -0.23
TOP3A-207ENST00000493648 EIF4G1Q04637 1599 aaKnown RBP13.38□□□□□ -0.27
TOP3A-207ENST00000493648 CC2D2AQ9P2K1 1620 aa13.35□□□□□ -0.27
TOP3A-207ENST00000493648 CECR2Q9BXF3 1484 aa13.29□□□□□ -0.28
TOP3A-207ENST00000493648 SENP3Q9H4L4 574 aaPredicted RBP13.16□□□□□ -0.3
TOP3A-207ENST00000493648 SMARCA4P51532 1647 aa13.1□□□□□ -0.31
TOP3A-207ENST00000493648 BAZ1AQ9NRL2 1556 aaPredicted RBP13.1□□□□□ -0.31
TOP3A-207ENST00000493648 NCAPD3P42695 1498 aa13.07□□□□□ -0.32
TOP3A-207ENST00000493648 ATAD2BQ9ULI0 1458 aa13.05□□□□□ -0.32
TOP3A-207ENST00000493648 SMARCA2P51531 1590 aa13.05□□□□□ -0.32
TOP3A-207ENST00000493648 MROH2BQ7Z745 1585 aa13□□□□□ -0.33
TOP3A-207ENST00000493648 HMGXB3Q12766 1538 aa12.97□□□□□ -0.33
TOP3A-207ENST00000493648 PEG3Q9GZU2 1588 aa12.96□□□□□ -0.33
TOP3A-207ENST00000493648 BAZ1BQ9UIG0 1483 aaKnown RBP12.96□□□□□ -0.34
TOP3A-207ENST00000493648 PHF23Q9BUL5 403 aaPredicted RBP12.9□□□□□ -0.34
TOP3A-207ENST00000493648 WIZO95785 1651 aa12.86□□□□□ -0.35
TOP3A-207ENST00000493648 RSF1Q96T23 1441 aaPredicted RBP12.86□□□□□ -0.35
TOP3A-207ENST00000493648 ERCC6Q03468 1493 aa12.76□□□□□ -0.37
TOP3A-207ENST00000493648 NESP48681 1621 aa12.75□□□□□ -0.37
TOP3A-207ENST00000493648 LAMC3Q9Y6N6 1575 aa12.73□□□□□ -0.37
TOP3A-207ENST00000493648 TOP2AP11388 1531 aaKnown RBP12.72□□□□□ -0.37
TOP3A-207ENST00000493648 CADPSQ9ULU8 1353 aa12.7□□□□□ -0.38
TOP3A-207ENST00000493648 PDS5BQ9NTI5 1447 aa12.68□□□□□ -0.38
TOP3A-207ENST00000493648 CUX2O14529 1486 aa12.62□□□□□ -0.39
TOP3A-207ENST00000493648 CCDC88BA6NC98 1476 aa12.59□□□□□ -0.39
TOP3A-207ENST00000493648 CFTRP13569 1480 aa12.59□□□□□ -0.39
TOP3A-207ENST00000493648 KIF21AQ7Z4S6 1674 aa12.59□□□□□ -0.39
TOP3A-207ENST00000493648 SUPT5HO00267 1087 aaKnown RBP12.55□□□□□ -0.4
TOP3A-207ENST00000493648 THOC2Q8NI27 1593 aaKnown RBP12.54□□□□□ -0.4
TOP3A-207ENST00000493648 FANCD2Q9BXW9 1451 aa12.53□□□□□ -0.4
TOP3A-207ENST00000493648 CEP164Q9UPV0 1460 aa12.53□□□□□ -0.4
TOP3A-207ENST00000493648 MRC2Q9UBG0 1479 aa12.52□□□□□ -0.41
TOP3A-207ENST00000493648 PRDM2Q13029 1718 aa12.47□□□□□ -0.41
TOP3A-207ENST00000493648 WDR62O43379 1518 aa12.46□□□□□ -0.42
TOP3A-207ENST00000493648 URB2Q14146 1524 aaKnown RBP12.39□□□□□ -0.43
TOP3A-207ENST00000493648 ABCC8Q09428 1581 aa12.37□□□□□ -0.43
TOP3A-207ENST00000493648 DNAJC5Q9H3Z4 198 aa12.35□□□□□ -0.43
TOP3A-207ENST00000493648 TOPBP1Q92547 1522 aa12.32□□□□□ -0.44
TOP3A-207ENST00000493648 DNMBPQ6XZF7 1577 aa12.3□□□□□ -0.44
TOP3A-207ENST00000493648 FOXD1Q16676 465 aa12.29□□□□□ -0.44
TOP3A-207ENST00000493648 IFT140Q96RY7 1462 aa12.27□□□□□ -0.44
TOP3A-207ENST00000493648 POLA1P09884 1462 aaPredicted RBP12.21□□□□□ -0.46
TOP3A-207ENST00000493648 SOGA1O94964 1423 aa12.2□□□□□ -0.46
TOP3A-207ENST00000493648 CUX1P39880 1505 aa12.2□□□□□ -0.46
TOP3A-207ENST00000493648 ZNF608Q9ULD9 1512 aaPredicted RBP12.2□□□□□ -0.46
TOP3A-207ENST00000493648 FGD5Q6ZNL6 1462 aa12.18□□□□□ -0.46
TOP3A-207ENST00000493648 TARBP1Q13395 1621 aaKnown RBP12.18□□□□□ -0.46
TOP3A-207ENST00000493648 RAD54L2Q9Y4B4 1467 aa12.17□□□□□ -0.46
TOP3A-207ENST00000493648 OSCARQ8IYS5 282 aa12.17□□□□□ -0.46
TOP3A-207ENST00000493648 AQRO60306 1485 aaKnown RBP eCLIP12.15□□□□□ -0.46
TOP3A-207ENST00000493648 WRNQ14191 1432 aaPredicted RBP eCLIP12.13□□□□□ -0.47
TOP3A-207ENST00000493648 TDRD9Q8NDG6 1382 aaKnown RBP12.13□□□□□ -0.47
TOP3A-207ENST00000493648 EIF4G3O43432 1585 aaKnown RBP12.13□□□□□ -0.47
TOP3A-207ENST00000493648 WDR97A6NE52 1622 aa12.09□□□□□ -0.47
TOP3A-207ENST00000493648 TOP2BQ02880 1626 aa12.09□□□□□ -0.47
TOP3A-207ENST00000493648 FBLN2P98095 1184 aa12.08□□□□□ -0.48
TOP3A-207ENST00000493648 BIVM-ERCC5R4GMW8 1640 aa12.08□□□□□ -0.48
TOP3A-207ENST00000493648 SYNJ1O43426 1573 aa12.06□□□□□ -0.48
TOP3A-207ENST00000493648 ABCA10Q8WWZ4 1543 aa12.06□□□□□ -0.48
TOP3A-207ENST00000493648 GAPVD1Q14C86 1478 aa12.05□□□□□ -0.48
TOP3A-207ENST00000493648 GRIN2BQ13224 1484 aa12.04□□□□□ -0.48
TOP3A-207ENST00000493648 CHMP7Q8WUX9 453 aaPredicted RBP12.04□□□□□ -0.48
TOP3A-207ENST00000493648 SNAPC4Q5SXM2 1469 aa12.02□□□□□ -0.49
TOP3A-207ENST00000493648 MAGI1Q96QZ7 1491 aaPredicted RBP12.02□□□□□ -0.49
TOP3A-207ENST00000493648 CHD1O14646 1710 aa12□□□□□ -0.49
TOP3A-207ENST00000493648 PBRM1Q86U86 1689 aa11.99□□□□□ -0.49
TOP3A-207ENST00000493648 ABCA5Q8WWZ7 1642 aa11.98□□□□□ -0.49
TOP3A-207ENST00000493648 SYNJ2O15056 1496 aa11.97□□□□□ -0.49
TOP3A-207ENST00000493648 TRIM41Q8WV44 630 aa11.93□□□□□ -0.5
TOP3A-207ENST00000493648 ERICH3Q5RHP9 1530 aa11.91□□□□□ -0.5
TOP3A-207ENST00000493648 FHAD1B1AJZ9 1412 aa11.91□□□□□ -0.5
TOP3A-207ENST00000493648 KIF27Q86VH2 1401 aa11.9□□□□□ -0.5
TOP3A-207ENST00000493648 RIMBP3CA6NJZ7 1639 aa11.89□□□□□ -0.51
TOP3A-207ENST00000493648 RIMBP3BA6NNM3 1639 aa11.89□□□□□ -0.51
TOP3A-207ENST00000493648 RIMBP3Q9UFD9 1639 aa11.89□□□□□ -0.51
TOP3A-207ENST00000493648 ARHGEF11O15085 1522 aa11.88□□□□□ -0.51
TOP3A-207ENST00000493648 GRIN2AQ12879 1464 aa11.88□□□□□ -0.51
TOP3A-207ENST00000493648 ADAMTS12P58397 1594 aa11.88□□□□□ -0.51
TOP3A-207ENST00000493648 POTEDQ86YR6 584 aa11.86□□□□□ -0.51
TOP3A-207ENST00000493648 CLASP1Q7Z460 1538 aa11.86□□□□□ -0.51
TOP3A-207ENST00000493648 IGF1RP08069 1367 aa11.85□□□□□ -0.51
TOP3A-207ENST00000493648 CYB5RLQ6IPT4 315 aa11.85□□□□□ -0.51
TOP3A-207ENST00000493648 NUP160Q12769 1436 aa11.82□□□□□ -0.52
TOP3A-207ENST00000493648 CARMIL1Q5VZK9 1371 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 135.9 ms