RNA–Protein interactions for RNA: ENST00000493618.5

ATG4B-223, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 899 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-223ENST00000493618 NISCHQ9Y2I1 1504 aa36.47■■■■□ 3.43
ATG4B-223ENST00000493618 CCDC180Q9P1Z9 1646 aa32.69■■■□□ 2.82
ATG4B-223ENST00000493618 ABCC9O60706 1549 aa32.5■■■□□ 2.79
ATG4B-223ENST00000493618 RB1CC1Q8TDY2 1594 aa30.99■■■□□ 2.55
ATG4B-223ENST00000493618 NACADO15069 1562 aa30.79■■■□□ 2.52
ATG4B-223ENST00000493618 DCAF8L2P0C7V8 631 aa30.74■■■□□ 2.51
ATG4B-223ENST00000493618 UNC13AQ9UPW8 1703 aa30.46■■■□□ 2.47
ATG4B-223ENST00000493618 MYO15BQ96JP2 1530 aa30.35■■■□□ 2.45
ATG4B-223ENST00000493618 PABPN1Q86U42 306 aaKnown RBP eCLIP30.27■■■□□ 2.44
ATG4B-223ENST00000493618 ZCCHC6Q5VYS8 1495 aaKnown RBP30.26■■■□□ 2.44
ATG4B-223ENST00000493618 DNAJC5BQ9UF47 199 aa30.26■■■□□ 2.43
ATG4B-223ENST00000493618 BICRAQ9NZM4 1560 aa30.11■■■□□ 2.41
ATG4B-223ENST00000493618 DCAF1Q9Y4B6 1507 aa30.07■■■□□ 2.4
ATG4B-223ENST00000493618 SCRIBQ14160 1630 aa29.86■■■□□ 2.37
ATG4B-223ENST00000493618 SHROOM4Q9ULL8 1493 aa29.58■■■□□ 2.33
ATG4B-223ENST00000493618 CC2D2AQ9P2K1 1620 aa29.38■■■□□ 2.29
ATG4B-223ENST00000493618 EIF4G1Q04637 1599 aaKnown RBP29.34■■■□□ 2.29
ATG4B-223ENST00000493618 CECR2Q9BXF3 1484 aa29.21■■■□□ 2.27
ATG4B-223ENST00000493618 SMARCA4P51532 1647 aa28.46■■■□□ 2.15
ATG4B-223ENST00000493618 NCAPD3P42695 1498 aa28.38■■■□□ 2.13
ATG4B-223ENST00000493618 ATAD2BQ9ULI0 1458 aa28.37■■■□□ 2.13
ATG4B-223ENST00000493618 SMARCA2P51531 1590 aa28.3■■■□□ 2.12
ATG4B-223ENST00000493618 BAZ1AQ9NRL2 1556 aaPredicted RBP28.29■■■□□ 2.12
ATG4B-223ENST00000493618 HMGXB3Q12766 1538 aa28.23■■■□□ 2.11
ATG4B-223ENST00000493618 MROH2BQ7Z745 1585 aa28.15■■■□□ 2.1
ATG4B-223ENST00000493618 BAZ1BQ9UIG0 1483 aaKnown RBP28.13■■■□□ 2.09
ATG4B-223ENST00000493618 PEG3Q9GZU2 1588 aa28.11■■■□□ 2.09
ATG4B-223ENST00000493618 ERCC6Q03468 1493 aa28.02■■■□□ 2.08
ATG4B-223ENST00000493618 NESP48681 1621 aa27.99■■■□□ 2.07
ATG4B-223ENST00000493618 WIZO95785 1651 aa27.89■■■□□ 2.06
ATG4B-223ENST00000493618 CUX2O14529 1486 aa27.84■■■□□ 2.05
ATG4B-223ENST00000493618 DNAJC5Q9H3Z4 198 aa27.84■■■□□ 2.05
ATG4B-223ENST00000493618 LAMC3Q9Y6N6 1575 aa27.77■■■□□ 2.04
ATG4B-223ENST00000493618 KIF21AQ7Z4S6 1674 aa27.72■■■□□ 2.03
ATG4B-223ENST00000493618 THOC2Q8NI27 1593 aaKnown RBP27.67■■■□□ 2.02
ATG4B-223ENST00000493618 RSF1Q96T23 1441 aaPredicted RBP27.58■■■□□ 2.01
ATG4B-223ENST00000493618 PDS5BQ9NTI5 1447 aa27.55■■■□□ 2
ATG4B-223ENST00000493618 CADPSQ9ULU8 1353 aa27.54■■■□□ 2
ATG4B-223ENST00000493618 TOP2AP11388 1531 aaKnown RBP27.46■■□□□ 1.99
ATG4B-223ENST00000493618 MRC2Q9UBG0 1479 aa27.35■■□□□ 1.97
ATG4B-223ENST00000493618 CEP164Q9UPV0 1460 aa27.29■■□□□ 1.96
ATG4B-223ENST00000493618 WDR62O43379 1518 aa27.29■■□□□ 1.96
ATG4B-223ENST00000493618 CFTRP13569 1480 aa27.27■■□□□ 1.96
ATG4B-223ENST00000493618 FANCD2Q9BXW9 1451 aa27.27■■□□□ 1.96
ATG4B-223ENST00000493618 PRDM2Q13029 1718 aa27.21■■□□□ 1.95
ATG4B-223ENST00000493618 CCDC88BA6NC98 1476 aa27.14■■□□□ 1.94
ATG4B-223ENST00000493618 URB2Q14146 1524 aaKnown RBP27.06■■□□□ 1.92
ATG4B-223ENST00000493618 TOPBP1Q92547 1522 aa26.8■■□□□ 1.88
ATG4B-223ENST00000493618 DNMBPQ6XZF7 1577 aa26.73■■□□□ 1.87
ATG4B-223ENST00000493618 IFT140Q96RY7 1462 aa26.71■■□□□ 1.87
ATG4B-223ENST00000493618 ZNF608Q9ULD9 1512 aaPredicted RBP26.7■■□□□ 1.87
ATG4B-223ENST00000493618 ABCC8Q09428 1581 aa26.68■■□□□ 1.86
ATG4B-223ENST00000493618 TRIM41Q8WV44 630 aa26.61■■□□□ 1.85
ATG4B-223ENST00000493618 EIF4G3O43432 1585 aaKnown RBP26.61■■□□□ 1.85
ATG4B-223ENST00000493618 SUPT5HO00267 1087 aaKnown RBP26.58■■□□□ 1.85
ATG4B-223ENST00000493618 OSCARQ8IYS5 282 aa26.58■■□□□ 1.85
ATG4B-223ENST00000493618 TARBP1Q13395 1621 aaKnown RBP26.57■■□□□ 1.84
ATG4B-223ENST00000493618 POLA1P09884 1462 aaPredicted RBP26.52■■□□□ 1.84
ATG4B-223ENST00000493618 AQRO60306 1485 aaKnown RBP eCLIP26.48■■□□□ 1.832e-11■■■□□ 18.5
ATG4B-223ENST00000493618 RAD54L2Q9Y4B4 1467 aa26.46■■□□□ 1.83
ATG4B-223ENST00000493618 CHD1O14646 1710 aa26.45■■□□□ 1.82
ATG4B-223ENST00000493618 CUX1P39880 1505 aa26.44■■□□□ 1.82
ATG4B-223ENST00000493618 FGD5Q6ZNL6 1462 aa26.41■■□□□ 1.82
ATG4B-223ENST00000493618 SOGA1O94964 1423 aa26.39■■□□□ 1.81
ATG4B-223ENST00000493618 RIMBP3CA6NJZ7 1639 aa26.36■■□□□ 1.81
ATG4B-223ENST00000493618 RIMBP3BA6NNM3 1639 aa26.36■■□□□ 1.81
ATG4B-223ENST00000493618 RIMBP3Q9UFD9 1639 aa26.36■■□□□ 1.81
ATG4B-223ENST00000493618 TDRD9Q8NDG6 1382 aaKnown RBP26.33■■□□□ 1.8
ATG4B-223ENST00000493618 WDR97A6NE52 1622 aa26.28■■□□□ 1.8
ATG4B-223ENST00000493618 FBLN2P98095 1184 aa26.27■■□□□ 1.8
ATG4B-223ENST00000493618 ARHGEF11O15085 1522 aa26.23■■□□□ 1.79
ATG4B-223ENST00000493618 SNAPC4Q5SXM2 1469 aa26.23■■□□□ 1.79
ATG4B-223ENST00000493618 PBRM1Q86U86 1689 aa26.2■■□□□ 1.78
ATG4B-223ENST00000493618 GRIN2BQ13224 1484 aa26.13■■□□□ 1.77
ATG4B-223ENST00000493618 MAGI1Q96QZ7 1491 aaPredicted RBP26.11■■□□□ 1.77
ATG4B-223ENST00000493618 BIVM-ERCC5R4GMW8 1640 aa26.1■■□□□ 1.77
ATG4B-223ENST00000493618 ABCA5Q8WWZ7 1642 aa26.09■■□□□ 1.77
ATG4B-223ENST00000493618 GAPVD1Q14C86 1478 aa26.09■■□□□ 1.77
ATG4B-223ENST00000493618 ABCA10Q8WWZ4 1543 aa26.08■■□□□ 1.77
ATG4B-223ENST00000493618 SYNJ1O43426 1573 aa26.07■■□□□ 1.76
ATG4B-223ENST00000493618 CHMP7Q8WUX9 453 aaPredicted RBP26.06■■□□□ 1.76
ATG4B-223ENST00000493618 TOP2BQ02880 1626 aa26.06■■□□□ 1.76
ATG4B-223ENST00000493618 SYNJ2O15056 1496 aa26.03■■□□□ 1.76
ATG4B-223ENST00000493618 CLASP1Q7Z460 1538 aa26.03■■□□□ 1.76
ATG4B-223ENST00000493618 WRNQ14191 1432 aaPredicted RBP eCLIP26.02■■□□□ 1.76
ATG4B-223ENST00000493618 CYB5RLQ6IPT4 315 aa26■■□□□ 1.75
ATG4B-223ENST00000493618 ARAP1Q96P48 1450 aa25.99■■□□□ 1.75
ATG4B-223ENST00000493618 ADAMTS12P58397 1594 aa25.88■■□□□ 1.73
ATG4B-223ENST00000493618 GRIN2AQ12879 1464 aa25.81■■□□□ 1.72
ATG4B-223ENST00000493618 CEP170Q5SW79 1584 aa25.78■■□□□ 1.72
ATG4B-223ENST00000493618 ERICH3Q5RHP9 1530 aa25.76■■□□□ 1.71
ATG4B-223ENST00000493618 FHAD1B1AJZ9 1412 aa25.73■■□□□ 1.71
ATG4B-223ENST00000493618 ERCC6L2Q5T890 1561 aa25.69■■□□□ 1.7
ATG4B-223ENST00000493618 NUP160Q12769 1436 aa25.69■■□□□ 1.7
ATG4B-223ENST00000493618 TRHP20396 242 aaPredicted RBP25.67■■□□□ 1.7
ATG4B-223ENST00000493618 SHROOM2Q13796 1616 aa25.63■■□□□ 1.69
ATG4B-223ENST00000493618 RUSC2Q8N2Y8 1516 aa25.52■■□□□ 1.68
ATG4B-223ENST00000493618 KIF27Q86VH2 1401 aa25.49■■□□□ 1.67
ATG4B-223ENST00000493618 CUL7Q14999 1698 aa25.48■■□□□ 1.67
ATG4B-223ENST00000493618 PRG4Q92954 1404 aaPredicted RBP25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms