RNA–Protein interactions for RNA: ENST00000493564.1

SGIP1-213, Transcript of SH3 domain GRB2 like endophilin interacting protein 1, humanhuman

TSL 3

Gene SGIP1, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGIP1-213ENST00000493564 NISCHQ9Y2I1 1504 aa22.9■■□□□ 1.26
SGIP1-213ENST00000493564 CCDC180Q9P1Z9 1646 aa20.27■□□□□ 0.84
SGIP1-213ENST00000493564 ABCC9O60706 1549 aa20.12■□□□□ 0.81
SGIP1-213ENST00000493564 DCAF8L2P0C7V8 631 aa19.42■□□□□ 0.7
SGIP1-213ENST00000493564 RB1CC1Q8TDY2 1594 aa19.19■□□□□ 0.66
SGIP1-213ENST00000493564 NACADO15069 1562 aa19.15■□□□□ 0.66
SGIP1-213ENST00000493564 ZCCHC6Q5VYS8 1495 aaKnown RBP19.02■□□□□ 0.63
SGIP1-213ENST00000493564 MYO15BQ96JP2 1530 aa18.94■□□□□ 0.62
SGIP1-213ENST00000493564 PABPN1Q86U42 306 aaKnown RBP eCLIP18.89■□□□□ 0.61
SGIP1-213ENST00000493564 DCAF1Q9Y4B6 1507 aa18.84■□□□□ 0.61
SGIP1-213ENST00000493564 UNC13AQ9UPW8 1703 aa18.75■□□□□ 0.59
SGIP1-213ENST00000493564 BICRAQ9NZM4 1560 aa18.64■□□□□ 0.58
SGIP1-213ENST00000493564 SCRIBQ14160 1630 aa18.64■□□□□ 0.57
SGIP1-213ENST00000493564 DNAJC5BQ9UF47 199 aa18.64■□□□□ 0.57
SGIP1-213ENST00000493564 SHROOM4Q9ULL8 1493 aa18.3■□□□□ 0.52
SGIP1-213ENST00000493564 EIF4G1Q04637 1599 aaKnown RBP18.16■□□□□ 0.5
SGIP1-213ENST00000493564 CC2D2AQ9P2K1 1620 aa18.12■□□□□ 0.49
SGIP1-213ENST00000493564 CECR2Q9BXF3 1484 aa18.05■□□□□ 0.48
SGIP1-213ENST00000493564 SMARCA4P51532 1647 aa17.76■□□□□ 0.43
SGIP1-213ENST00000493564 ATAD2BQ9ULI0 1458 aa17.73■□□□□ 0.43
SGIP1-213ENST00000493564 BAZ1AQ9NRL2 1556 aaPredicted RBP17.72■□□□□ 0.43
SGIP1-213ENST00000493564 NCAPD3P42695 1498 aa17.7■□□□□ 0.42
SGIP1-213ENST00000493564 MROH2BQ7Z745 1585 aa17.69■□□□□ 0.42
SGIP1-213ENST00000493564 SMARCA2P51531 1590 aa17.64■□□□□ 0.41
SGIP1-213ENST00000493564 BAZ1BQ9UIG0 1483 aaKnown RBP17.57■□□□□ 0.4
SGIP1-213ENST00000493564 HMGXB3Q12766 1538 aa17.54■□□□□ 0.4
SGIP1-213ENST00000493564 PEG3Q9GZU2 1588 aa17.53■□□□□ 0.4
SGIP1-213ENST00000493564 WIZO95785 1651 aa17.49■□□□□ 0.39
SGIP1-213ENST00000493564 RSF1Q96T23 1441 aaPredicted RBP17.47■□□□□ 0.39
SGIP1-213ENST00000493564 NESP48681 1621 aa17.39■□□□□ 0.38
SGIP1-213ENST00000493564 ERCC6Q03468 1493 aa17.32■□□□□ 0.36
SGIP1-213ENST00000493564 AEBP2Q6ZN18 517 aaPredicted RBP17.24■□□□□ 0.35
SGIP1-213ENST00000493564 TOP2AP11388 1531 aaKnown RBP17.23■□□□□ 0.35
SGIP1-213ENST00000493564 CADPSQ9ULU8 1353 aa17.23■□□□□ 0.35
SGIP1-213ENST00000493564 LAMC3Q9Y6N6 1575 aa17.2■□□□□ 0.34
SGIP1-213ENST00000493564 PDS5BQ9NTI5 1447 aa17.16■□□□□ 0.34
SGIP1-213ENST00000493564 SUPT5HO00267 1087 aaKnown RBP17.13■□□□□ 0.33
SGIP1-213ENST00000493564 CCDC88BA6NC98 1476 aa17.12■□□□□ 0.33
SGIP1-213ENST00000493564 KIF21AQ7Z4S6 1674 aa17.1■□□□□ 0.33
SGIP1-213ENST00000493564 CUX2O14529 1486 aa17.08■□□□□ 0.32
SGIP1-213ENST00000493564 CFTRP13569 1480 aa17.07■□□□□ 0.32
SGIP1-213ENST00000493564 THOC2Q8NI27 1593 aaKnown RBP17.02■□□□□ 0.32
SGIP1-213ENST00000493564 FANCD2Q9BXW9 1451 aa17.02■□□□□ 0.32
SGIP1-213ENST00000493564 CEP164Q9UPV0 1460 aa16.98■□□□□ 0.31
SGIP1-213ENST00000493564 MRC2Q9UBG0 1479 aa16.97■□□□□ 0.31
SGIP1-213ENST00000493564 WDR62O43379 1518 aa16.88■□□□□ 0.29
SGIP1-213ENST00000493564 URB2Q14146 1524 aaKnown RBP16.86■□□□□ 0.29
SGIP1-213ENST00000493564 PRDM2Q13029 1718 aa16.82■□□□□ 0.28
SGIP1-213ENST00000493564 DNAJC5Q9H3Z4 198 aa16.79■□□□□ 0.28
SGIP1-213ENST00000493564 TOPBP1Q92547 1522 aa16.73■□□□□ 0.27
SGIP1-213ENST00000493564 ABCC8Q09428 1581 aa16.67■□□□□ 0.26
SGIP1-213ENST00000493564 DNMBPQ6XZF7 1577 aa16.66■□□□□ 0.26
SGIP1-213ENST00000493564 ZNF608Q9ULD9 1512 aaPredicted RBP16.63■□□□□ 0.25
SGIP1-213ENST00000493564 IFT140Q96RY7 1462 aa16.62■□□□□ 0.25
SGIP1-213ENST00000493564 RAD54L2Q9Y4B4 1467 aa16.59■□□□□ 0.25
SGIP1-213ENST00000493564 POLA1P09884 1462 aaPredicted RBP16.58■□□□□ 0.24
SGIP1-213ENST00000493564 CUX1P39880 1505 aa16.58■□□□□ 0.24
SGIP1-213ENST00000493564 SOGA1O94964 1423 aa16.57■□□□□ 0.24
SGIP1-213ENST00000493564 CHIC1Q5VXU3 224 aa16.57■□□□□ 0.24
SGIP1-213ENST00000493564 AQRO60306 1485 aaKnown RBP eCLIP16.54■□□□□ 0.24
SGIP1-213ENST00000493564 FGD5Q6ZNL6 1462 aa16.54■□□□□ 0.24
SGIP1-213ENST00000493564 TDRD9Q8NDG6 1382 aaKnown RBP16.52■□□□□ 0.24
SGIP1-213ENST00000493564 TARBP1Q13395 1621 aaKnown RBP16.52■□□□□ 0.23
SGIP1-213ENST00000493564 OSCARQ8IYS5 282 aa16.5■□□□□ 0.23
SGIP1-213ENST00000493564 EIF4G3O43432 1585 aaKnown RBP16.47■□□□□ 0.23
SGIP1-213ENST00000493564 WRNQ14191 1432 aaPredicted RBP eCLIP16.45■□□□□ 0.22
SGIP1-213ENST00000493564 FBLN2P98095 1184 aa16.45■□□□□ 0.22
SGIP1-213ENST00000493564 SYNJ1O43426 1573 aa16.4■□□□□ 0.22
SGIP1-213ENST00000493564 TOP2BQ02880 1626 aa16.37■□□□□ 0.21
SGIP1-213ENST00000493564 BIVM-ERCC5R4GMW8 1640 aa16.34■□□□□ 0.21
SGIP1-213ENST00000493564 CHMP7Q8WUX9 453 aaPredicted RBP16.34■□□□□ 0.21
SGIP1-213ENST00000493564 GAPVD1Q14C86 1478 aa16.34■□□□□ 0.21
SGIP1-213ENST00000493564 SNAPC4Q5SXM2 1469 aa16.34■□□□□ 0.21
SGIP1-213ENST00000493564 ABCA10Q8WWZ4 1543 aa16.34■□□□□ 0.21
SGIP1-213ENST00000493564 GRIN2BQ13224 1484 aa16.32■□□□□ 0.2
SGIP1-213ENST00000493564 WDR97A6NE52 1622 aa16.31■□□□□ 0.2
SGIP1-213ENST00000493564 TRIM41Q8WV44 630 aa16.3■□□□□ 0.2
SGIP1-213ENST00000493564 CHD1O14646 1710 aa16.29■□□□□ 0.2
SGIP1-213ENST00000493564 MAGI1Q96QZ7 1491 aaPredicted RBP16.25■□□□□ 0.19
SGIP1-213ENST00000493564 ABCA5Q8WWZ7 1642 aa16.24■□□□□ 0.19
SGIP1-213ENST00000493564 PBRM1Q86U86 1689 aa16.24■□□□□ 0.19
SGIP1-213ENST00000493564 SYNJ2O15056 1496 aa16.22■□□□□ 0.19
SGIP1-213ENST00000493564 CYB5RLQ6IPT4 315 aa16.15■□□□□ 0.18
SGIP1-213ENST00000493564 RIMBP3CA6NJZ7 1639 aa16.15■□□□□ 0.18
SGIP1-213ENST00000493564 RIMBP3BA6NNM3 1639 aa16.15■□□□□ 0.18
SGIP1-213ENST00000493564 RIMBP3Q9UFD9 1639 aa16.15■□□□□ 0.18
SGIP1-213ENST00000493564 ARHGEF11O15085 1522 aa16.14■□□□□ 0.18
SGIP1-213ENST00000493564 FHAD1B1AJZ9 1412 aa16.13■□□□□ 0.17
SGIP1-213ENST00000493564 ERICH3Q5RHP9 1530 aa16.12■□□□□ 0.17
SGIP1-213ENST00000493564 KIF27Q86VH2 1401 aa16.11■□□□□ 0.17
SGIP1-213ENST00000493564 GRIN2AQ12879 1464 aa16.11■□□□□ 0.17
SGIP1-213ENST00000493564 IGF1RP08069 1367 aa16.11■□□□□ 0.17
SGIP1-213ENST00000493564 ADAMTS12P58397 1594 aa16.1■□□□□ 0.17
SGIP1-213ENST00000493564 CLASP1Q7Z460 1538 aa16.09■□□□□ 0.17
SGIP1-213ENST00000493564 CEP170Q5SW79 1584 aa16.04■□□□□ 0.16
SGIP1-213ENST00000493564 RUSC2Q8N2Y8 1516 aa16.03■□□□□ 0.16
SGIP1-213ENST00000493564 NUP160Q12769 1436 aa16.02■□□□□ 0.16
SGIP1-213ENST00000493564 ARAP1Q96P48 1450 aa16.02■□□□□ 0.15
SGIP1-213ENST00000493564 CARMIL1Q5VZK9 1371 aa16.01■□□□□ 0.15
SGIP1-213ENST00000493564 JPH4Q96JJ6 628 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms