RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 NISCHQ9Y2I1 1504 aa40.52■■■■■ 4.08
LIME1-208ENST00000493265 ABCC9O60706 1549 aa36.18■■■■□ 3.38
LIME1-208ENST00000493265 CCDC180Q9P1Z9 1646 aa35.97■■■■□ 3.35
LIME1-208ENST00000493265 RB1CC1Q8TDY2 1594 aa34.32■■■■□ 3.09
LIME1-208ENST00000493265 DNAJC5BQ9UF47 199 aa34.05■■■■□ 3.04
LIME1-208ENST00000493265 NACADO15069 1562 aa34.01■■■■□ 3.03
LIME1-208ENST00000493265 DCAF8L2P0C7V8 631 aa33.86■■■■□ 3.01
LIME1-208ENST00000493265 ZCCHC6Q5VYS8 1495 aaKnown RBP33.85■■■■□ 3.01
LIME1-208ENST00000493265 UNC13AQ9UPW8 1703 aa33.64■■■□□ 2.98
LIME1-208ENST00000493265 PABPN1Q86U42 306 aaKnown RBP eCLIP33.62■■■□□ 2.972e-15■■■□□ 16.7
LIME1-208ENST00000493265 DCAF1Q9Y4B6 1507 aa33.44■■■□□ 2.94
LIME1-208ENST00000493265 MYO15BQ96JP2 1530 aa33.42■■■□□ 2.94
LIME1-208ENST00000493265 BICRAQ9NZM4 1560 aa33.34■■■□□ 2.93
LIME1-208ENST00000493265 SCRIBQ14160 1630 aa32.82■■■□□ 2.84
LIME1-208ENST00000493265 SHROOM4Q9ULL8 1493 aa32.79■■■□□ 2.84
LIME1-208ENST00000493265 CC2D2AQ9P2K1 1620 aa32.67■■■□□ 2.82
LIME1-208ENST00000493265 CECR2Q9BXF3 1484 aa32.58■■■□□ 2.81
LIME1-208ENST00000493265 EIF4G1Q04637 1599 aaKnown RBP32.53■■■□□ 2.8
LIME1-208ENST00000493265 DNAJC5Q9H3Z4 198 aa31.37■■■□□ 2.61
LIME1-208ENST00000493265 BAZ1AQ9NRL2 1556 aaPredicted RBP31.36■■■□□ 2.61
LIME1-208ENST00000493265 NCAPD3P42695 1498 aa31.36■■■□□ 2.61
LIME1-208ENST00000493265 SMARCA4P51532 1647 aa31.34■■■□□ 2.61
LIME1-208ENST00000493265 MROH2BQ7Z745 1585 aa31.28■■■□□ 2.6
LIME1-208ENST00000493265 ATAD2BQ9ULI0 1458 aa31.27■■■□□ 2.6
LIME1-208ENST00000493265 ERCC6Q03468 1493 aa31.24■■■□□ 2.59
LIME1-208ENST00000493265 CUX2O14529 1486 aa31.2■■■□□ 2.58
LIME1-208ENST00000493265 SMARCA2P51531 1590 aa31.19■■■□□ 2.58
LIME1-208ENST00000493265 HMGXB3Q12766 1538 aa31.16■■■□□ 2.58
LIME1-208ENST00000493265 RSF1Q96T23 1441 aaPredicted RBP31.11■■■□□ 2.57
LIME1-208ENST00000493265 NESP48681 1621 aa31.02■■■□□ 2.56
LIME1-208ENST00000493265 WIZO95785 1651 aa31.01■■■□□ 2.55
LIME1-208ENST00000493265 BAZ1BQ9UIG0 1483 aaKnown RBP30.99■■■□□ 2.55
LIME1-208ENST00000493265 SUPT5HO00267 1087 aaKnown RBP30.93■■■□□ 2.54
LIME1-208ENST00000493265 PEG3Q9GZU2 1588 aa30.92■■■□□ 2.54
LIME1-208ENST00000493265 THOC2Q8NI27 1593 aaKnown RBP30.76■■■□□ 2.52
LIME1-208ENST00000493265 LAMC3Q9Y6N6 1575 aa30.74■■■□□ 2.51
LIME1-208ENST00000493265 KIF21AQ7Z4S6 1674 aa30.68■■■□□ 2.5
LIME1-208ENST00000493265 TOP2AP11388 1531 aaKnown RBP30.65■■■□□ 2.5
LIME1-208ENST00000493265 PDS5BQ9NTI5 1447 aa30.54■■■□□ 2.48
LIME1-208ENST00000493265 CADPSQ9ULU8 1353 aa30.41■■■□□ 2.46
LIME1-208ENST00000493265 CCDC88BA6NC98 1476 aa30.32■■■□□ 2.44
LIME1-208ENST00000493265 MRC2Q9UBG0 1479 aa30.32■■■□□ 2.44
LIME1-208ENST00000493265 WDR62O43379 1518 aa30.26■■■□□ 2.43
LIME1-208ENST00000493265 CEP164Q9UPV0 1460 aa30.18■■■□□ 2.42
LIME1-208ENST00000493265 FANCD2Q9BXW9 1451 aa30.12■■■□□ 2.41
LIME1-208ENST00000493265 CFTRP13569 1480 aa30.03■■■□□ 2.4
LIME1-208ENST00000493265 TRIM41Q8WV44 630 aa30.01■■■□□ 2.39
LIME1-208ENST00000493265 URB2Q14146 1524 aaKnown RBP29.89■■■□□ 2.38
LIME1-208ENST00000493265 PRDM2Q13029 1718 aa29.84■■■□□ 2.37
LIME1-208ENST00000493265 OSCARQ8IYS5 282 aa29.71■■■□□ 2.35
LIME1-208ENST00000493265 ZNF608Q9ULD9 1512 aaPredicted RBP29.56■■■□□ 2.32
LIME1-208ENST00000493265 IFT140Q96RY7 1462 aa29.55■■■□□ 2.32
LIME1-208ENST00000493265 TOPBP1Q92547 1522 aa29.53■■■□□ 2.32
LIME1-208ENST00000493265 RIMBP3CA6NJZ7 1639 aa29.45■■■□□ 2.31
LIME1-208ENST00000493265 RIMBP3BA6NNM3 1639 aa29.45■■■□□ 2.31
LIME1-208ENST00000493265 RIMBP3Q9UFD9 1639 aa29.45■■■□□ 2.31
LIME1-208ENST00000493265 ABCC8Q09428 1581 aa29.45■■■□□ 2.31
LIME1-208ENST00000493265 EIF4G3O43432 1585 aaKnown RBP29.43■■■□□ 2.3
LIME1-208ENST00000493265 DNMBPQ6XZF7 1577 aa29.42■■■□□ 2.3
LIME1-208ENST00000493265 WRNQ14191 1432 aaPredicted RBP eCLIP29.34■■■□□ 2.29
LIME1-208ENST00000493265 ARHGEF11O15085 1522 aa29.31■■■□□ 2.28
LIME1-208ENST00000493265 CUX1P39880 1505 aa29.31■■■□□ 2.28
LIME1-208ENST00000493265 TARBP1Q13395 1621 aaKnown RBP29.29■■■□□ 2.28
LIME1-208ENST00000493265 CHD1O14646 1710 aa29.28■■■□□ 2.28
LIME1-208ENST00000493265 SYNJ1O43426 1573 aa29.26■■■□□ 2.27
LIME1-208ENST00000493265 AQRO60306 1485 aaKnown RBP eCLIP29.25■■■□□ 2.276e-6■■■■□ 25.1
LIME1-208ENST00000493265 POLA1P09884 1462 aaPredicted RBP29.21■■■□□ 2.27
LIME1-208ENST00000493265 TOP2BQ02880 1626 aa29.17■■■□□ 2.26
LIME1-208ENST00000493265 BIVM-ERCC5R4GMW8 1640 aa29.16■■■□□ 2.26
LIME1-208ENST00000493265 FGD5Q6ZNL6 1462 aa29.13■■■□□ 2.25
LIME1-208ENST00000493265 RAD54L2Q9Y4B4 1467 aa29.12■■■□□ 2.25
LIME1-208ENST00000493265 FBLN2P98095 1184 aa29.12■■■□□ 2.25
LIME1-208ENST00000493265 CHIC1Q5VXU3 224 aa29.11■■■□□ 2.25
LIME1-208ENST00000493265 CYB5RLQ6IPT4 315 aa29.08■■■□□ 2.25
LIME1-208ENST00000493265 SOGA1O94964 1423 aa29.05■■■□□ 2.24
LIME1-208ENST00000493265 TDRD9Q8NDG6 1382 aaKnown RBP29.04■■■□□ 2.24
LIME1-208ENST00000493265 ARAP1Q96P48 1450 aa29.01■■■□□ 2.23
LIME1-208ENST00000493265 SNAPC4Q5SXM2 1469 aa28.97■■■□□ 2.23
LIME1-208ENST00000493265 WDR97A6NE52 1622 aa28.94■■■□□ 2.22
LIME1-208ENST00000493265 CLASP1Q7Z460 1538 aa28.86■■■□□ 2.21
LIME1-208ENST00000493265 TRHP20396 242 aaPredicted RBP28.85■■■□□ 2.21
LIME1-208ENST00000493265 MAGI1Q96QZ7 1491 aaPredicted RBP28.85■■■□□ 2.21
LIME1-208ENST00000493265 CHMP7Q8WUX9 453 aaPredicted RBP28.83■■■□□ 2.21
LIME1-208ENST00000493265 GRIN2BQ13224 1484 aa28.83■■■□□ 2.21
LIME1-208ENST00000493265 ABCA10Q8WWZ4 1543 aa28.82■■■□□ 2.2
LIME1-208ENST00000493265 PBRM1Q86U86 1689 aa28.8■■■□□ 2.2
LIME1-208ENST00000493265 SYNJ2O15056 1496 aa28.76■■■□□ 2.19
LIME1-208ENST00000493265 GAPVD1Q14C86 1478 aa28.71■■■□□ 2.19
LIME1-208ENST00000493265 KIF27Q86VH2 1401 aa28.67■■■□□ 2.18
LIME1-208ENST00000493265 ABCA5Q8WWZ7 1642 aa28.66■■■□□ 2.18
LIME1-208ENST00000493265 RUSC2Q8N2Y8 1516 aa28.65■■■□□ 2.18
LIME1-208ENST00000493265 FAM9AQ8IZU1 332 aaPredicted RBP28.62■■■□□ 2.17
LIME1-208ENST00000493265 IGF1RP08069 1367 aa28.48■■■□□ 2.15
LIME1-208ENST00000493265 ERICH3Q5RHP9 1530 aa28.48■■■□□ 2.15
LIME1-208ENST00000493265 GRIN2AQ12879 1464 aa28.47■■■□□ 2.15
LIME1-208ENST00000493265 ADAMTS12P58397 1594 aa28.47■■■□□ 2.15
LIME1-208ENST00000493265 EEA1Q15075 1411 aa28.44■■■□□ 2.14
LIME1-208ENST00000493265 ERCC6L2Q5T890 1561 aa28.44■■■□□ 2.14
LIME1-208ENST00000493265 CEP170Q5SW79 1584 aa28.41■■■□□ 2.14
LIME1-208ENST00000493265 CSRNP3Q8WYN3 585 aa28.41■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms