RNA–Protein interactions for RNA: ENST00000493259.5

CPA4-210, Transcript of carboxypeptidase A4, humanhuman

TSL 2 BASIC

Gene CPA4, Length 1,512 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPA4-210ENST00000493259 NISCHQ9Y2I1 1504 aa27.84■■■□□ 2.05
CPA4-210ENST00000493259 ABCC9O60706 1549 aa25.54■■□□□ 1.68
CPA4-210ENST00000493259 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
CPA4-210ENST00000493259 DNAJC5BQ9UF47 199 aa24.3■■□□□ 1.48
CPA4-210ENST00000493259 RB1CC1Q8TDY2 1594 aa24.11■■□□□ 1.45
CPA4-210ENST00000493259 NACADO15069 1562 aa23.84■■□□□ 1.41
CPA4-210ENST00000493259 PABPN1Q86U42 306 aaKnown RBP eCLIP23.74■■□□□ 1.39
CPA4-210ENST00000493259 DCAF8L2P0C7V8 631 aa23.71■■□□□ 1.39
CPA4-210ENST00000493259 UNC13AQ9UPW8 1703 aa23.57■■□□□ 1.36
CPA4-210ENST00000493259 BICRAQ9NZM4 1560 aa23.44■■□□□ 1.34
CPA4-210ENST00000493259 MYO15BQ96JP2 1530 aa23.37■■□□□ 1.33
CPA4-210ENST00000493259 SHROOM4Q9ULL8 1493 aa23.05■■□□□ 1.28
CPA4-210ENST00000493259 CC2D2AQ9P2K1 1620 aa23.04■■□□□ 1.28
CPA4-210ENST00000493259 CECR2Q9BXF3 1484 aa23.03■■□□□ 1.28
CPA4-210ENST00000493259 ZCCHC6Q5VYS8 1495 aaKnown RBP23■■□□□ 1.27
CPA4-210ENST00000493259 DCAF1Q9Y4B6 1507 aa22.95■■□□□ 1.26
CPA4-210ENST00000493259 SCRIBQ14160 1630 aa22.92■■□□□ 1.26
CPA4-210ENST00000493259 EIF4G1Q04637 1599 aaKnown RBP22.9■■□□□ 1.26
CPA4-210ENST00000493259 DNAJC5Q9H3Z4 198 aa22.56■■□□□ 1.2
CPA4-210ENST00000493259 CUX2O14529 1486 aa22.13■■□□□ 1.13
CPA4-210ENST00000493259 ERCC6Q03468 1493 aa22.07■■□□□ 1.12
CPA4-210ENST00000493259 NCAPD3P42695 1498 aa22.03■■□□□ 1.12
CPA4-210ENST00000493259 ATAD2BQ9ULI0 1458 aa21.92■■□□□ 1.1
CPA4-210ENST00000493259 NESP48681 1621 aa21.84■■□□□ 1.09
CPA4-210ENST00000493259 HMGXB3Q12766 1538 aa21.82■■□□□ 1.08
CPA4-210ENST00000493259 SMARCA2P51531 1590 aa21.82■■□□□ 1.08
CPA4-210ENST00000493259 SMARCA4P51532 1647 aa21.81■■□□□ 1.08
CPA4-210ENST00000493259 BAZ1BQ9UIG0 1483 aaKnown RBP21.69■■□□□ 1.06
CPA4-210ENST00000493259 THOC2Q8NI27 1593 aaKnown RBP21.67■■□□□ 1.06
CPA4-210ENST00000493259 BAZ1AQ9NRL2 1556 aaPredicted RBP21.63■■□□□ 1.05
CPA4-210ENST00000493259 LAMC3Q9Y6N6 1575 aa21.59■■□□□ 1.05
CPA4-210ENST00000493259 PEG3Q9GZU2 1588 aa21.57■■□□□ 1.04
CPA4-210ENST00000493259 KIF21AQ7Z4S6 1674 aa21.52■■□□□ 1.04
CPA4-210ENST00000493259 PDS5BQ9NTI5 1447 aa21.48■■□□□ 1.03
CPA4-210ENST00000493259 MROH2BQ7Z745 1585 aa21.47■■□□□ 1.03
CPA4-210ENST00000493259 TRIM41Q8WV44 630 aa21.45■■□□□ 1.02
CPA4-210ENST00000493259 CADPSQ9ULU8 1353 aa21.35■■□□□ 1.01
CPA4-210ENST00000493259 MRC2Q9UBG0 1479 aa21.33■■□□□ 1
CPA4-210ENST00000493259 WDR62O43379 1518 aa21.29■■□□□ 1
CPA4-210ENST00000493259 WIZO95785 1651 aa21.19■□□□□ 0.98
CPA4-210ENST00000493259 CEP164Q9UPV0 1460 aa21.18■□□□□ 0.98
CPA4-210ENST00000493259 FANCD2Q9BXW9 1451 aa21.12■□□□□ 0.97
CPA4-210ENST00000493259 OSCARQ8IYS5 282 aa21.08■□□□□ 0.96
CPA4-210ENST00000493259 CFTRP13569 1480 aa21.02■□□□□ 0.96
CPA4-210ENST00000493259 URB2Q14146 1524 aaKnown RBP20.97■□□□□ 0.95
CPA4-210ENST00000493259 TOP2AP11388 1531 aaKnown RBP20.88■□□□□ 0.93
CPA4-210ENST00000493259 RSF1Q96T23 1441 aaPredicted RBP20.88■□□□□ 0.93
CPA4-210ENST00000493259 RIMBP3CA6NJZ7 1639 aa20.85■□□□□ 0.93
CPA4-210ENST00000493259 RIMBP3BA6NNM3 1639 aa20.85■□□□□ 0.93
CPA4-210ENST00000493259 RIMBP3Q9UFD9 1639 aa20.85■□□□□ 0.93
CPA4-210ENST00000493259 ZNF608Q9ULD9 1512 aaPredicted RBP20.79■□□□□ 0.92
CPA4-210ENST00000493259 IFT140Q96RY7 1462 aa20.76■□□□□ 0.91
CPA4-210ENST00000493259 PRDM2Q13029 1718 aa20.75■□□□□ 0.91
CPA4-210ENST00000493259 ARHGEF11O15085 1522 aa20.75■□□□□ 0.91
CPA4-210ENST00000493259 TOPBP1Q92547 1522 aa20.67■□□□□ 0.9
CPA4-210ENST00000493259 CCDC88BA6NC98 1476 aa20.66■□□□□ 0.9
CPA4-210ENST00000493259 EIF4G3O43432 1585 aaKnown RBP20.64■□□□□ 0.9
CPA4-210ENST00000493259 CYB5RLQ6IPT4 315 aa20.63■□□□□ 0.89
CPA4-210ENST00000493259 ABCC8Q09428 1581 aa20.58■□□□□ 0.88
CPA4-210ENST00000493259 DNMBPQ6XZF7 1577 aa20.55■□□□□ 0.88
CPA4-210ENST00000493259 CHD1O14646 1710 aa20.55■□□□□ 0.88
CPA4-210ENST00000493259 AQRO60306 1485 aaKnown RBP eCLIP20.55■□□□□ 0.88
CPA4-210ENST00000493259 TRHP20396 242 aaPredicted RBP20.53■□□□□ 0.88
CPA4-210ENST00000493259 ARAP1Q96P48 1450 aa20.52■□□□□ 0.88
CPA4-210ENST00000493259 TARBP1Q13395 1621 aaKnown RBP20.51■□□□□ 0.87
CPA4-210ENST00000493259 FBLN2P98095 1184 aa20.5■□□□□ 0.87
CPA4-210ENST00000493259 POLA1P09884 1462 aaPredicted RBP20.45■□□□□ 0.86
CPA4-210ENST00000493259 RAD54L2Q9Y4B4 1467 aa20.39■□□□□ 0.86
CPA4-210ENST00000493259 TDRD9Q8NDG6 1382 aaKnown RBP20.37■□□□□ 0.85
CPA4-210ENST00000493259 SOGA1O94964 1423 aa20.34■□□□□ 0.85
CPA4-210ENST00000493259 SNAPC4Q5SXM2 1469 aa20.33■□□□□ 0.84
CPA4-210ENST00000493259 CLASP1Q7Z460 1538 aa20.31■□□□□ 0.84
CPA4-210ENST00000493259 CHMP7Q8WUX9 453 aaPredicted RBP20.27■□□□□ 0.84
CPA4-210ENST00000493259 FGD5Q6ZNL6 1462 aa20.26■□□□□ 0.83
CPA4-210ENST00000493259 SYNJ1O43426 1573 aa20.26■□□□□ 0.83
CPA4-210ENST00000493259 WDR97A6NE52 1622 aa20.25■□□□□ 0.83
CPA4-210ENST00000493259 MAGI1Q96QZ7 1491 aaPredicted RBP20.24■□□□□ 0.83
CPA4-210ENST00000493259 GRIN2BQ13224 1484 aa20.2■□□□□ 0.82
CPA4-210ENST00000493259 AEBP2Q6ZN18 517 aaPredicted RBP20.19■□□□□ 0.82
CPA4-210ENST00000493259 CUX1P39880 1505 aa20.19■□□□□ 0.82
CPA4-210ENST00000493259 SYNJ2O15056 1496 aa20.18■□□□□ 0.82
CPA4-210ENST00000493259 GAPVD1Q14C86 1478 aa20.12■□□□□ 0.81
CPA4-210ENST00000493259 PBRM1Q86U86 1689 aa20.1■□□□□ 0.81
CPA4-210ENST00000493259 ABCA5Q8WWZ7 1642 aa20.01■□□□□ 0.79
CPA4-210ENST00000493259 ABCA10Q8WWZ4 1543 aa20■□□□□ 0.79
CPA4-210ENST00000493259 ERCC6L2Q5T890 1561 aa19.99■□□□□ 0.79
CPA4-210ENST00000493259 GRIN2AQ12879 1464 aa19.95■□□□□ 0.78
CPA4-210ENST00000493259 CEP170Q5SW79 1584 aa19.91■□□□□ 0.78
CPA4-210ENST00000493259 ADAMTS12P58397 1594 aa19.89■□□□□ 0.77
CPA4-210ENST00000493259 NUP160Q12769 1436 aa19.89■□□□□ 0.77
CPA4-210ENST00000493259 WRNQ14191 1432 aaPredicted RBP eCLIP19.84■□□□□ 0.77
CPA4-210ENST00000493259 SHROOM2Q13796 1616 aa19.84■□□□□ 0.77
CPA4-210ENST00000493259 FHAD1B1AJZ9 1412 aa19.81■□□□□ 0.76
CPA4-210ENST00000493259 KIF13AQ9H1H9 1805 aa19.78■□□□□ 0.76
CPA4-210ENST00000493259 TOP2BQ02880 1626 aa19.75■□□□□ 0.75
CPA4-210ENST00000493259 BIVM-ERCC5R4GMW8 1640 aa19.75■□□□□ 0.75
CPA4-210ENST00000493259 PRG4Q92954 1404 aaPredicted RBP19.73■□□□□ 0.75
CPA4-210ENST00000493259 ERICH3Q5RHP9 1530 aa19.73■□□□□ 0.75
CPA4-210ENST00000493259 SUPT5HO00267 1087 aaKnown RBP19.71■□□□□ 0.75
CPA4-210ENST00000493259 JPH4Q96JJ6 628 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms