RNA–Protein interactions for RNA: ENST00000493212.1

PHTF1-212, Transcript of putative homeodomain transcription factor 1, humanhuman

TSL 4

Gene PHTF1, Length 956 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-212ENST00000493212 NISCHQ9Y2I1 1504 aa52.19■■■■■ 5.94
PHTF1-212ENST00000493212 CCDC180Q9P1Z9 1646 aa46.83■■■■■ 5.09
PHTF1-212ENST00000493212 ABCC9O60706 1549 aa46.74■■■■■ 5.07
PHTF1-212ENST00000493212 RB1CC1Q8TDY2 1594 aa44.53■■■■■ 4.72
PHTF1-212ENST00000493212 NACADO15069 1562 aa44.26■■■■■ 4.68
PHTF1-212ENST00000493212 DNAJC5BQ9UF47 199 aa43.9■■■■■ 4.62
PHTF1-212ENST00000493212 DCAF8L2P0C7V8 631 aa43.84■■■■■ 4.61
PHTF1-212ENST00000493212 MYO15BQ96JP2 1530 aa43.73■■■■■ 4.59
PHTF1-212ENST00000493212 UNC13AQ9UPW8 1703 aa43.55■■■■■ 4.56
PHTF1-212ENST00000493212 PABPN1Q86U42 306 aaKnown RBP eCLIP43.49■■■■■ 4.55
PHTF1-212ENST00000493212 BICRAQ9NZM4 1560 aa43.31■■■■■ 4.52
PHTF1-212ENST00000493212 ZCCHC6Q5VYS8 1495 aaKnown RBP43.27■■■■■ 4.52
PHTF1-212ENST00000493212 DCAF1Q9Y4B6 1507 aa43.16■■■■■ 4.5
PHTF1-212ENST00000493212 SHROOM4Q9ULL8 1493 aa42.73■■■■■ 4.43
PHTF1-212ENST00000493212 SCRIBQ14160 1630 aa42.6■■■■■ 4.41
PHTF1-212ENST00000493212 CC2D2AQ9P2K1 1620 aa42.27■■■■■ 4.36
PHTF1-212ENST00000493212 EIF4G1Q04637 1599 aaKnown RBP42.2■■■■■ 4.35
PHTF1-212ENST00000493212 CECR2Q9BXF3 1484 aa42.12■■■■■ 4.33
PHTF1-212ENST00000493212 NCAPD3P42695 1498 aa40.89■■■■■ 4.14
PHTF1-212ENST00000493212 ATAD2BQ9ULI0 1458 aa40.74■■■■■ 4.11
PHTF1-212ENST00000493212 SMARCA4P51532 1647 aa40.7■■■■■ 4.11
PHTF1-212ENST00000493212 SMARCA2P51531 1590 aa40.61■■■■■ 4.09
PHTF1-212ENST00000493212 HMGXB3Q12766 1538 aa40.58■■■■■ 4.09
PHTF1-212ENST00000493212 BAZ1AQ9NRL2 1556 aaPredicted RBP40.48■■■■■ 4.07
PHTF1-212ENST00000493212 PEG3Q9GZU2 1588 aa40.36■■■■■ 4.05
PHTF1-212ENST00000493212 CUX2O14529 1486 aa40.33■■■■■ 4.05
PHTF1-212ENST00000493212 ERCC6Q03468 1493 aa40.32■■■■■ 4.05
PHTF1-212ENST00000493212 BAZ1BQ9UIG0 1483 aaKnown RBP40.3■■■■■ 4.04
PHTF1-212ENST00000493212 DNAJC5Q9H3Z4 198 aa40.28■■■■■ 4.04
PHTF1-212ENST00000493212 MROH2BQ7Z745 1585 aa40.2■■■■■ 4.03
PHTF1-212ENST00000493212 NESP48681 1621 aa40.19■■■■■ 4.02
PHTF1-212ENST00000493212 LAMC3Q9Y6N6 1575 aa39.93■■■■□ 3.98
PHTF1-212ENST00000493212 THOC2Q8NI27 1593 aaKnown RBP39.83■■■■□ 3.97
PHTF1-212ENST00000493212 WIZO95785 1651 aa39.7■■■■□ 3.95
PHTF1-212ENST00000493212 KIF21AQ7Z4S6 1674 aa39.67■■■■□ 3.94
PHTF1-212ENST00000493212 PDS5BQ9NTI5 1447 aa39.66■■■■□ 3.94
PHTF1-212ENST00000493212 CADPSQ9ULU8 1353 aa39.6■■■■□ 3.93
PHTF1-212ENST00000493212 RSF1Q96T23 1441 aaPredicted RBP39.38■■■■□ 3.89
PHTF1-212ENST00000493212 MRC2Q9UBG0 1479 aa39.34■■■■□ 3.89
PHTF1-212ENST00000493212 WDR62O43379 1518 aa39.29■■■■□ 3.88
PHTF1-212ENST00000493212 TOP2AP11388 1531 aaKnown RBP39.22■■■■□ 3.87
PHTF1-212ENST00000493212 CFTRP13569 1480 aa39.19■■■■□ 3.86
PHTF1-212ENST00000493212 CEP164Q9UPV0 1460 aa39.17■■■■□ 3.86
PHTF1-212ENST00000493212 FANCD2Q9BXW9 1451 aa39.14■■■■□ 3.86
PHTF1-212ENST00000493212 URB2Q14146 1524 aaKnown RBP38.85■■■■□ 3.81
PHTF1-212ENST00000493212 CCDC88BA6NC98 1476 aa38.76■■■■□ 3.8
PHTF1-212ENST00000493212 PRDM2Q13029 1718 aa38.76■■■■□ 3.8
PHTF1-212ENST00000493212 OSCARQ8IYS5 282 aa38.43■■■■□ 3.74
PHTF1-212ENST00000493212 TOPBP1Q92547 1522 aa38.43■■■■□ 3.74
PHTF1-212ENST00000493212 IFT140Q96RY7 1462 aa38.41■■■■□ 3.74
PHTF1-212ENST00000493212 TRIM41Q8WV44 630 aa38.4■■■■□ 3.74
PHTF1-212ENST00000493212 ZNF608Q9ULD9 1512 aaPredicted RBP38.35■■■■□ 3.73
PHTF1-212ENST00000493212 ABCC8Q09428 1581 aa38.32■■■■□ 3.73
PHTF1-212ENST00000493212 DNMBPQ6XZF7 1577 aa38.27■■■■□ 3.72
PHTF1-212ENST00000493212 EIF4G3O43432 1585 aaKnown RBP38.14■■■■□ 3.7
PHTF1-212ENST00000493212 TARBP1Q13395 1621 aaKnown RBP38.11■■■■□ 3.69
PHTF1-212ENST00000493212 POLA1P09884 1462 aaPredicted RBP38.03■■■■□ 3.68
PHTF1-212ENST00000493212 AQRO60306 1485 aaKnown RBP eCLIP37.98■■■■□ 3.67
PHTF1-212ENST00000493212 RIMBP3CA6NJZ7 1639 aa37.98■■■■□ 3.67
PHTF1-212ENST00000493212 RIMBP3BA6NNM3 1639 aa37.98■■■■□ 3.67
PHTF1-212ENST00000493212 RIMBP3Q9UFD9 1639 aa37.98■■■■□ 3.67
PHTF1-212ENST00000493212 RAD54L2Q9Y4B4 1467 aa37.87■■■■□ 3.65
PHTF1-212ENST00000493212 ARHGEF11O15085 1522 aa37.87■■■■□ 3.65
PHTF1-212ENST00000493212 CHD1O14646 1710 aa37.83■■■■□ 3.65
PHTF1-212ENST00000493212 SOGA1O94964 1423 aa37.82■■■■□ 3.64
PHTF1-212ENST00000493212 FGD5Q6ZNL6 1462 aa37.77■■■■□ 3.64
PHTF1-212ENST00000493212 CUX1P39880 1505 aa37.77■■■■□ 3.64
PHTF1-212ENST00000493212 TDRD9Q8NDG6 1382 aaKnown RBP37.74■■■■□ 3.63
PHTF1-212ENST00000493212 WDR97A6NE52 1622 aa37.72■■■■□ 3.63
PHTF1-212ENST00000493212 FBLN2P98095 1184 aa37.62■■■■□ 3.61
PHTF1-212ENST00000493212 SNAPC4Q5SXM2 1469 aa37.6■■■■□ 3.61
PHTF1-212ENST00000493212 MAGI1Q96QZ7 1491 aaPredicted RBP37.52■■■■□ 3.6
PHTF1-212ENST00000493212 CYB5RLQ6IPT4 315 aa37.51■■■■□ 3.6
PHTF1-212ENST00000493212 GRIN2BQ13224 1484 aa37.51■■■■□ 3.59
PHTF1-212ENST00000493212 ARAP1Q96P48 1450 aa37.51■■■■□ 3.59
PHTF1-212ENST00000493212 SUPT5HO00267 1087 aaKnown RBP37.49■■■■□ 3.59
PHTF1-212ENST00000493212 CLASP1Q7Z460 1538 aa37.46■■■■□ 3.59
PHTF1-212ENST00000493212 SYNJ2O15056 1496 aa37.39■■■■□ 3.58
PHTF1-212ENST00000493212 CHMP7Q8WUX9 453 aaPredicted RBP37.39■■■■□ 3.58
PHTF1-212ENST00000493212 ABCA10Q8WWZ4 1543 aa37.38■■■■□ 3.57
PHTF1-212ENST00000493212 GAPVD1Q14C86 1478 aa37.38■■■■□ 3.57
PHTF1-212ENST00000493212 SYNJ1O43426 1573 aa37.38■■■■□ 3.57
PHTF1-212ENST00000493212 PBRM1Q86U86 1689 aa37.35■■■■□ 3.57
PHTF1-212ENST00000493212 ABCA5Q8WWZ7 1642 aa37.33■■■■□ 3.57
PHTF1-212ENST00000493212 WRNQ14191 1432 aaPredicted RBP eCLIP37.19■■■■□ 3.54
PHTF1-212ENST00000493212 BIVM-ERCC5R4GMW8 1640 aa37.18■■■■□ 3.54
PHTF1-212ENST00000493212 TOP2BQ02880 1626 aa37.17■■■■□ 3.54
PHTF1-212ENST00000493212 GRIN2AQ12879 1464 aa37.04■■■■□ 3.52
PHTF1-212ENST00000493212 ADAMTS12P58397 1594 aa37.04■■■■□ 3.52
PHTF1-212ENST00000493212 TRHP20396 242 aaPredicted RBP37.03■■■■□ 3.52
PHTF1-212ENST00000493212 NUP160Q12769 1436 aa36.95■■■■□ 3.51
PHTF1-212ENST00000493212 CEP170Q5SW79 1584 aa36.92■■■■□ 3.5
PHTF1-212ENST00000493212 FHAD1B1AJZ9 1412 aa36.91■■■■□ 3.5
PHTF1-212ENST00000493212 ERICH3Q5RHP9 1530 aa36.9■■■■□ 3.5
PHTF1-212ENST00000493212 ERCC6L2Q5T890 1561 aa36.86■■■■□ 3.49
PHTF1-212ENST00000493212 SHROOM2Q13796 1616 aa36.79■■■■□ 3.48
PHTF1-212ENST00000493212 PRG4Q92954 1404 aaPredicted RBP36.52■■■■□ 3.44
PHTF1-212ENST00000493212 RUSC2Q8N2Y8 1516 aa36.51■■■■□ 3.44
PHTF1-212ENST00000493212 JPH4Q96JJ6 628 aa36.5■■■■□ 3.43
PHTF1-212ENST00000493212 IGF1RP08069 1367 aa36.43■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms