RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-204ENST00000493161 NISCHQ9Y2I1 1504 aa34.76■■■■□ 3.15
SAMM50-204ENST00000493161 ABCC9O60706 1549 aa31.54■■■□□ 2.64
SAMM50-204ENST00000493161 CCDC180Q9P1Z9 1646 aa31.21■■■□□ 2.59
SAMM50-204ENST00000493161 DNAJC5BQ9UF47 199 aa29.86■■■□□ 2.37
SAMM50-204ENST00000493161 RB1CC1Q8TDY2 1594 aa29.84■■■□□ 2.37
SAMM50-204ENST00000493161 NACADO15069 1562 aa29.57■■■□□ 2.32
SAMM50-204ENST00000493161 DCAF8L2P0C7V8 631 aa29.49■■■□□ 2.31
SAMM50-204ENST00000493161 PABPN1Q86U42 306 aaKnown RBP eCLIP29.37■■■□□ 2.29
SAMM50-204ENST00000493161 UNC13AQ9UPW8 1703 aa29.21■■■□□ 2.27
SAMM50-204ENST00000493161 MYO15BQ96JP2 1530 aa29.07■■■□□ 2.24
SAMM50-204ENST00000493161 BICRAQ9NZM4 1560 aa29.06■■■□□ 2.24
SAMM50-204ENST00000493161 ZCCHC6Q5VYS8 1495 aaKnown RBP28.76■■■□□ 2.19
SAMM50-204ENST00000493161 DCAF1Q9Y4B6 1507 aa28.64■■■□□ 2.17
SAMM50-204ENST00000493161 SCRIBQ14160 1630 aa28.52■■■□□ 2.16
SAMM50-204ENST00000493161 SHROOM4Q9ULL8 1493 aa28.5■■■□□ 2.15
SAMM50-204ENST00000493161 CC2D2AQ9P2K1 1620 aa28.45■■■□□ 2.14
SAMM50-204ENST00000493161 CECR2Q9BXF3 1484 aa28.4■■■□□ 2.14
SAMM50-204ENST00000493161 EIF4G1Q04637 1599 aaKnown RBP28.33■■■□□ 2.12
SAMM50-204ENST00000493161 DNAJC5Q9H3Z4 198 aa27.48■■□□□ 1.99
SAMM50-204ENST00000493161 NCAPD3P42695 1498 aa27.34■■□□□ 1.97
SAMM50-204ENST00000493161 ATAD2BQ9ULI0 1458 aa27.25■■□□□ 1.95
SAMM50-204ENST00000493161 CUX2O14529 1486 aa27.19■■□□□ 1.94
SAMM50-204ENST00000493161 ERCC6Q03468 1493 aa27.19■■□□□ 1.94
SAMM50-204ENST00000493161 SMARCA4P51532 1647 aa27.16■■□□□ 1.94
SAMM50-204ENST00000493161 SMARCA2P51531 1590 aa27.1■■□□□ 1.93
SAMM50-204ENST00000493161 HMGXB3Q12766 1538 aa27.09■■□□□ 1.93
SAMM50-204ENST00000493161 NESP48681 1621 aa27.06■■□□□ 1.92
SAMM50-204ENST00000493161 BAZ1AQ9NRL2 1556 aaPredicted RBP26.96■■□□□ 1.91
SAMM50-204ENST00000493161 BAZ1BQ9UIG0 1483 aaKnown RBP26.95■■□□□ 1.91
SAMM50-204ENST00000493161 PEG3Q9GZU2 1588 aa26.87■■□□□ 1.89
SAMM50-204ENST00000493161 MROH2BQ7Z745 1585 aa26.83■■□□□ 1.89
SAMM50-204ENST00000493161 THOC2Q8NI27 1593 aaKnown RBP26.77■■□□□ 1.88
SAMM50-204ENST00000493161 LAMC3Q9Y6N6 1575 aa26.72■■□□□ 1.87
SAMM50-204ENST00000493161 KIF21AQ7Z4S6 1674 aa26.65■■□□□ 1.86
SAMM50-204ENST00000493161 PDS5BQ9NTI5 1447 aa26.58■■□□□ 1.85
SAMM50-204ENST00000493161 CADPSQ9ULU8 1353 aa26.5■■□□□ 1.83
SAMM50-204ENST00000493161 WIZO95785 1651 aa26.49■■□□□ 1.83
SAMM50-204ENST00000493161 MRC2Q9UBG0 1479 aa26.39■■□□□ 1.82
SAMM50-204ENST00000493161 WDR62O43379 1518 aa26.34■■□□□ 1.81
SAMM50-204ENST00000493161 CEP164Q9UPV0 1460 aa26.23■■□□□ 1.79
SAMM50-204ENST00000493161 TRIM41Q8WV44 630 aa26.22■■□□□ 1.79
SAMM50-204ENST00000493161 FANCD2Q9BXW9 1451 aa26.22■■□□□ 1.79
SAMM50-204ENST00000493161 RSF1Q96T23 1441 aaPredicted RBP26.18■■□□□ 1.78
SAMM50-204ENST00000493161 CFTRP13569 1480 aa26.16■■□□□ 1.78
SAMM50-204ENST00000493161 TOP2AP11388 1531 aaKnown RBP26.09■■□□□ 1.77
SAMM50-204ENST00000493161 URB2Q14146 1524 aaKnown RBP26.05■■□□□ 1.76
SAMM50-204ENST00000493161 OSCARQ8IYS5 282 aa25.95■■□□□ 1.74
SAMM50-204ENST00000493161 CCDC88BA6NC98 1476 aa25.84■■□□□ 1.73
SAMM50-204ENST00000493161 PRDM2Q13029 1718 aa25.82■■□□□ 1.72
SAMM50-204ENST00000493161 ZNF608Q9ULD9 1512 aaPredicted RBP25.78■■□□□ 1.72
SAMM50-204ENST00000493161 IFT140Q96RY7 1462 aa25.72■■□□□ 1.71
SAMM50-204ENST00000493161 TOPBP1Q92547 1522 aa25.7■■□□□ 1.7
SAMM50-204ENST00000493161 RIMBP3CA6NJZ7 1639 aa25.66■■□□□ 1.7
SAMM50-204ENST00000493161 RIMBP3BA6NNM3 1639 aa25.66■■□□□ 1.7
SAMM50-204ENST00000493161 RIMBP3Q9UFD9 1639 aa25.66■■□□□ 1.7
SAMM50-204ENST00000493161 EIF4G3O43432 1585 aaKnown RBP25.57■■□□□ 1.68
SAMM50-204ENST00000493161 DNMBPQ6XZF7 1577 aa25.56■■□□□ 1.68
SAMM50-204ENST00000493161 ABCC8Q09428 1581 aa25.55■■□□□ 1.68
SAMM50-204ENST00000493161 ARHGEF11O15085 1522 aa25.54■■□□□ 1.68
SAMM50-204ENST00000493161 AQRO60306 1485 aaKnown RBP eCLIP25.51■■□□□ 1.67
SAMM50-204ENST00000493161 TARBP1Q13395 1621 aaKnown RBP25.49■■□□□ 1.67
SAMM50-204ENST00000493161 POLA1P09884 1462 aaPredicted RBP25.43■■□□□ 1.66
SAMM50-204ENST00000493161 CHD1O14646 1710 aa25.43■■□□□ 1.66
SAMM50-204ENST00000493161 CYB5RLQ6IPT4 315 aa25.4■■□□□ 1.66
SAMM50-204ENST00000493161 RAD54L2Q9Y4B4 1467 aa25.39■■□□□ 1.65
SAMM50-204ENST00000493161 FBLN2P98095 1184 aa25.37■■□□□ 1.65
SAMM50-204ENST00000493161 TDRD9Q8NDG6 1382 aaKnown RBP25.32■■□□□ 1.64
SAMM50-204ENST00000493161 SOGA1O94964 1423 aa25.3■■□□□ 1.64
SAMM50-204ENST00000493161 ARAP1Q96P48 1450 aa25.29■■□□□ 1.64
SAMM50-204ENST00000493161 FGD5Q6ZNL6 1462 aa25.24■■□□□ 1.63
SAMM50-204ENST00000493161 SNAPC4Q5SXM2 1469 aa25.21■■□□□ 1.63
SAMM50-204ENST00000493161 CUX1P39880 1505 aa25.21■■□□□ 1.63
SAMM50-204ENST00000493161 TRHP20396 242 aaPredicted RBP25.17■■□□□ 1.62
SAMM50-204ENST00000493161 CLASP1Q7Z460 1538 aa25.13■■□□□ 1.61
SAMM50-204ENST00000493161 CHMP7Q8WUX9 453 aaPredicted RBP25.12■■□□□ 1.61
SAMM50-204ENST00000493161 WDR97A6NE52 1622 aa25.12■■□□□ 1.61
SAMM50-204ENST00000493161 GRIN2BQ13224 1484 aa25.09■■□□□ 1.61
SAMM50-204ENST00000493161 MAGI1Q96QZ7 1491 aaPredicted RBP25.09■■□□□ 1.61
SAMM50-204ENST00000493161 SYNJ1O43426 1573 aa25.05■■□□□ 1.6
SAMM50-204ENST00000493161 SYNJ2O15056 1496 aa25.02■■□□□ 1.6
SAMM50-204ENST00000493161 GAPVD1Q14C86 1478 aa24.98■■□□□ 1.59
SAMM50-204ENST00000493161 PBRM1Q86U86 1689 aa24.97■■□□□ 1.59
SAMM50-204ENST00000493161 ABCA10Q8WWZ4 1543 aa24.91■■□□□ 1.58
SAMM50-204ENST00000493161 ABCA5Q8WWZ7 1642 aa24.91■■□□□ 1.58
SAMM50-204ENST00000493161 SUPT5HO00267 1087 aaKnown RBP24.9■■□□□ 1.58
SAMM50-204ENST00000493161 ERCC6L2Q5T890 1561 aa24.8■■□□□ 1.56
SAMM50-204ENST00000493161 GRIN2AQ12879 1464 aa24.77■■□□□ 1.56
SAMM50-204ENST00000493161 WRNQ14191 1432 aaPredicted RBP eCLIP24.77■■□□□ 1.56
SAMM50-204ENST00000493161 ADAMTS12P58397 1594 aa24.73■■□□□ 1.55
SAMM50-204ENST00000493161 CEP170Q5SW79 1584 aa24.72■■□□□ 1.55
SAMM50-204ENST00000493161 NUP160Q12769 1436 aa24.7■■□□□ 1.55
SAMM50-204ENST00000493161 BIVM-ERCC5R4GMW8 1640 aa24.7■■□□□ 1.54
SAMM50-204ENST00000493161 TOP2BQ02880 1626 aa24.69■■□□□ 1.54
SAMM50-204ENST00000493161 FHAD1B1AJZ9 1412 aa24.64■■□□□ 1.54
SAMM50-204ENST00000493161 SHROOM2Q13796 1616 aa24.61■■□□□ 1.53
SAMM50-204ENST00000493161 ERICH3Q5RHP9 1530 aa24.58■■□□□ 1.53
SAMM50-204ENST00000493161 AEBP2Q6ZN18 517 aaPredicted RBP24.55■■□□□ 1.52
SAMM50-204ENST00000493161 PRG4Q92954 1404 aaPredicted RBP24.51■■□□□ 1.51
SAMM50-204ENST00000493161 JPH4Q96JJ6 628 aa24.46■■□□□ 1.51
SAMM50-204ENST00000493161 KIF13AQ9H1H9 1805 aa24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms