RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 NISCHQ9Y2I1 1504 aa17.78■□□□□ 0.44
HERC4-211ENST00000492996 CCDC180Q9P1Z9 1646 aa16.74■□□□□ 0.27
HERC4-211ENST00000492996 MYO15BQ96JP2 1530 aa15.84■□□□□ 0.13
HERC4-211ENST00000492996 SHROOM4Q9ULL8 1493 aa15.53■□□□□ 0.08
HERC4-211ENST00000492996 DCAF1Q9Y4B6 1507 aa15.5■□□□□ 0.07
HERC4-211ENST00000492996 NACADO15069 1562 aa15.42■□□□□ 0.06
HERC4-211ENST00000492996 RB1CC1Q8TDY2 1594 aa15.28■□□□□ 0.04
HERC4-211ENST00000492996 UNC13AQ9UPW8 1703 aa15.15■□□□□ 0.02
HERC4-211ENST00000492996 ABCC9O60706 1549 aa14.93□□□□□ -0.02
HERC4-211ENST00000492996 ZCCHC6Q5VYS8 1495 aaKnown RBP14.93□□□□□ -0.02
HERC4-211ENST00000492996 BICRAQ9NZM4 1560 aa14.89□□□□□ -0.03
HERC4-211ENST00000492996 PEG3Q9GZU2 1588 aa14.4□□□□□ -0.11
HERC4-211ENST00000492996 EIF4G1Q04637 1599 aaKnown RBP14.28□□□□□ -0.12
HERC4-211ENST00000492996 SMARCA2P51531 1590 aa14.25□□□□□ -0.13
HERC4-211ENST00000492996 HMGXB3Q12766 1538 aa14.21□□□□□ -0.13
HERC4-211ENST00000492996 CC2D2AQ9P2K1 1620 aa14.19□□□□□ -0.14
HERC4-211ENST00000492996 NCAPD3P42695 1498 aa14.02□□□□□ -0.17
HERC4-211ENST00000492996 SCRIBQ14160 1630 aa13.99□□□□□ -0.17
HERC4-211ENST00000492996 PRDM2Q13029 1718 aa13.98□□□□□ -0.17
HERC4-211ENST00000492996 SMARCA4P51532 1647 aa13.95□□□□□ -0.18
HERC4-211ENST00000492996 CUX2O14529 1486 aa13.9□□□□□ -0.18
HERC4-211ENST00000492996 BAZ1AQ9NRL2 1556 aaPredicted RBP13.87□□□□□ -0.19
HERC4-211ENST00000492996 LAMC3Q9Y6N6 1575 aa13.82□□□□□ -0.2
HERC4-211ENST00000492996 CECR2Q9BXF3 1484 aa13.82□□□□□ -0.2
HERC4-211ENST00000492996 DNAJC5BQ9UF47 199 aa13.78□□□□□ -0.2
HERC4-211ENST00000492996 THOC2Q8NI27 1593 aaKnown RBP13.77□□□□□ -0.2
HERC4-211ENST00000492996 WDR97A6NE52 1622 aa13.73□□□□□ -0.21
HERC4-211ENST00000492996 ATAD2BQ9ULI0 1458 aa13.71□□□□□ -0.21
HERC4-211ENST00000492996 WDR62O43379 1518 aa13.59□□□□□ -0.23
HERC4-211ENST00000492996 TOP2AP11388 1531 aaKnown RBP13.49□□□□□ -0.25
HERC4-211ENST00000492996 KIF21AQ7Z4S6 1674 aa13.44□□□□□ -0.26
HERC4-211ENST00000492996 BAZ1BQ9UIG0 1483 aaKnown RBP13.38□□□□□ -0.27
HERC4-211ENST00000492996 MROH2BQ7Z745 1585 aa13.37□□□□□ -0.27
HERC4-211ENST00000492996 CFTRP13569 1480 aa13.34□□□□□ -0.27
HERC4-211ENST00000492996 PABPN1Q86U42 306 aaKnown RBP eCLIP13.33□□□□□ -0.28
HERC4-211ENST00000492996 MRC2Q9UBG0 1479 aa13.28□□□□□ -0.28
HERC4-211ENST00000492996 ABCC8Q09428 1581 aa13.26□□□□□ -0.29
HERC4-211ENST00000492996 WIZO95785 1651 aa13.23□□□□□ -0.29
HERC4-211ENST00000492996 PDS5BQ9NTI5 1447 aa13.22□□□□□ -0.29
HERC4-211ENST00000492996 CADPSQ9ULU8 1353 aa13.17□□□□□ -0.3
HERC4-211ENST00000492996 TARBP1Q13395 1621 aaKnown RBP13.14□□□□□ -0.31
HERC4-211ENST00000492996 DNMBPQ6XZF7 1577 aa13.14□□□□□ -0.31
HERC4-211ENST00000492996 RSF1Q96T23 1441 aaPredicted RBP13.1□□□□□ -0.31
HERC4-211ENST00000492996 BIVM-ERCC5R4GMW8 1640 aa13.06□□□□□ -0.32
HERC4-211ENST00000492996 CEP164Q9UPV0 1460 aa13.05□□□□□ -0.32
HERC4-211ENST00000492996 IFT140Q96RY7 1462 aa13.03□□□□□ -0.32
HERC4-211ENST00000492996 NESP48681 1621 aa13□□□□□ -0.33
HERC4-211ENST00000492996 URB2Q14146 1524 aaKnown RBP12.99□□□□□ -0.33
HERC4-211ENST00000492996 DNAJC5Q9H3Z4 198 aa12.99□□□□□ -0.33
HERC4-211ENST00000492996 CLASP1Q7Z460 1538 aa12.97□□□□□ -0.33
HERC4-211ENST00000492996 FANCD2Q9BXW9 1451 aa12.97□□□□□ -0.33
HERC4-211ENST00000492996 ABCA5Q8WWZ7 1642 aa12.97□□□□□ -0.33
HERC4-211ENST00000492996 SHROOM2Q13796 1616 aa12.95□□□□□ -0.34
HERC4-211ENST00000492996 ERCC6Q03468 1493 aa12.93□□□□□ -0.34
HERC4-211ENST00000492996 EIF4G3O43432 1585 aaKnown RBP12.91□□□□□ -0.34
HERC4-211ENST00000492996 PBRM1Q86U86 1689 aa12.9□□□□□ -0.34
HERC4-211ENST00000492996 TOPBP1Q92547 1522 aa12.88□□□□□ -0.35
HERC4-211ENST00000492996 CCDC88BA6NC98 1476 aa12.87□□□□□ -0.35
HERC4-211ENST00000492996 CHD1O14646 1710 aa12.81□□□□□ -0.36
HERC4-211ENST00000492996 TOP2BQ02880 1626 aa12.81□□□□□ -0.36
HERC4-211ENST00000492996 MAGI1Q96QZ7 1491 aaPredicted RBP12.81□□□□□ -0.36
HERC4-211ENST00000492996 ABCA10Q8WWZ4 1543 aa12.78□□□□□ -0.36
HERC4-211ENST00000492996 RIMBP3CA6NJZ7 1639 aa12.75□□□□□ -0.37
HERC4-211ENST00000492996 RIMBP3BA6NNM3 1639 aa12.75□□□□□ -0.37
HERC4-211ENST00000492996 RIMBP3Q9UFD9 1639 aa12.75□□□□□ -0.37
HERC4-211ENST00000492996 ERICH3Q5RHP9 1530 aa12.74□□□□□ -0.37
HERC4-211ENST00000492996 ADAMTS12P58397 1594 aa12.71□□□□□ -0.37
HERC4-211ENST00000492996 SYNJ1O43426 1573 aa12.69□□□□□ -0.38
HERC4-211ENST00000492996 DCAF8L2P0C7V8 631 aa12.68□□□□□ -0.38
HERC4-211ENST00000492996 CUX1P39880 1505 aa12.68□□□□□ -0.38
HERC4-211ENST00000492996 CUL7Q14999 1698 aa12.68□□□□□ -0.38
HERC4-211ENST00000492996 POLA1P09884 1462 aaPredicted RBP12.66□□□□□ -0.38
HERC4-211ENST00000492996 NUP160Q12769 1436 aa12.6□□□□□ -0.39
HERC4-211ENST00000492996 SYNJ2O15056 1496 aa12.59□□□□□ -0.39
HERC4-211ENST00000492996 GRIN2BQ13224 1484 aa12.57□□□□□ -0.4
HERC4-211ENST00000492996 ARHGEF11O15085 1522 aa12.55□□□□□ -0.4
HERC4-211ENST00000492996 RUSC2Q8N2Y8 1516 aa12.55□□□□□ -0.4
HERC4-211ENST00000492996 MAPKBP1O60336 1514 aa12.49□□□□□ -0.41
HERC4-211ENST00000492996 FGD5Q6ZNL6 1462 aa12.49□□□□□ -0.41
HERC4-211ENST00000492996 GLI2P10070 1586 aa12.49□□□□□ -0.41
HERC4-211ENST00000492996 ZNF608Q9ULD9 1512 aaPredicted RBP12.47□□□□□ -0.41
HERC4-211ENST00000492996 CEP170Q5SW79 1584 aa12.45□□□□□ -0.42
HERC4-211ENST00000492996 ARAP1Q96P48 1450 aa12.43□□□□□ -0.42
HERC4-211ENST00000492996 UHRF1BP1LA0JNW5 1464 aa12.42□□□□□ -0.42
HERC4-211ENST00000492996 KIF13AQ9H1H9 1805 aa12.42□□□□□ -0.42
HERC4-211ENST00000492996 GRIN2AQ12879 1464 aa12.39□□□□□ -0.43
HERC4-211ENST00000492996 FHAD1B1AJZ9 1412 aa12.39□□□□□ -0.43
HERC4-211ENST00000492996 SNAPC4Q5SXM2 1469 aa12.37□□□□□ -0.43
HERC4-211ENST00000492996 GAPVD1Q14C86 1478 aa12.36□□□□□ -0.43
HERC4-211ENST00000492996 CTTNBP2Q8WZ74 1663 aa12.35□□□□□ -0.43
HERC4-211ENST00000492996 SOGA1O94964 1423 aa12.33□□□□□ -0.43
HERC4-211ENST00000492996 UGGT2Q9NYU1 1516 aa12.33□□□□□ -0.44
HERC4-211ENST00000492996 WRNQ14191 1432 aaPredicted RBP eCLIP12.29□□□□□ -0.44
HERC4-211ENST00000492996 KDM5BQ9UGL1 1544 aa12.29□□□□□ -0.44
HERC4-211ENST00000492996 PPRC1Q5VV67 1664 aaKnown RBP12.29□□□□□ -0.44
HERC4-211ENST00000492996 MAP3K4Q9Y6R4 1608 aa12.28□□□□□ -0.44
HERC4-211ENST00000492996 SUPT5HO00267 1087 aaKnown RBP12.27□□□□□ -0.44
HERC4-211ENST00000492996 OSCARQ8IYS5 282 aa12.25□□□□□ -0.45
HERC4-211ENST00000492996 DIP2BQ9P265 1576 aa12.24□□□□□ -0.45
HERC4-211ENST00000492996 KIAA0586Q9BVV6 1533 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms