RNA–Protein interactions for RNA: ENST00000492858.6

GPNMB-214, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 721 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-214ENST00000492858 NISCHQ9Y2I1 1504 aa30.93■■■□□ 2.54
GPNMB-214ENST00000492858 ABCC9O60706 1549 aa28.58■■■□□ 2.17
GPNMB-214ENST00000492858 CCDC180Q9P1Z9 1646 aa27.94■■■□□ 2.06
GPNMB-214ENST00000492858 DNAJC5BQ9UF47 199 aa27.31■■□□□ 1.96
GPNMB-214ENST00000492858 RB1CC1Q8TDY2 1594 aa26.91■■□□□ 1.9
GPNMB-214ENST00000492858 NACADO15069 1562 aa26.58■■□□□ 1.85
GPNMB-214ENST00000492858 PABPN1Q86U42 306 aaKnown RBP eCLIP26.55■■□□□ 1.84
GPNMB-214ENST00000492858 DCAF8L2P0C7V8 631 aa26.43■■□□□ 1.82
GPNMB-214ENST00000492858 UNC13AQ9UPW8 1703 aa26.23■■□□□ 1.79
GPNMB-214ENST00000492858 BICRAQ9NZM4 1560 aa26.15■■□□□ 1.78
GPNMB-214ENST00000492858 MYO15BQ96JP2 1530 aa26.02■■□□□ 1.76
GPNMB-214ENST00000492858 CECR2Q9BXF3 1484 aa25.79■■□□□ 1.72
GPNMB-214ENST00000492858 CC2D2AQ9P2K1 1620 aa25.74■■□□□ 1.71
GPNMB-214ENST00000492858 SHROOM4Q9ULL8 1493 aa25.72■■□□□ 1.71
GPNMB-214ENST00000492858 EIF4G1Q04637 1599 aaKnown RBP25.56■■□□□ 1.68
GPNMB-214ENST00000492858 ZCCHC6Q5VYS8 1495 aaKnown RBP25.52■■□□□ 1.68
GPNMB-214ENST00000492858 SCRIBQ14160 1630 aa25.49■■□□□ 1.67
GPNMB-214ENST00000492858 DCAF1Q9Y4B6 1507 aa25.49■■□□□ 1.67
GPNMB-214ENST00000492858 DNAJC5Q9H3Z4 198 aa25.47■■□□□ 1.67
GPNMB-214ENST00000492858 CUX2O14529 1486 aa24.83■■□□□ 1.57
GPNMB-214ENST00000492858 ERCC6Q03468 1493 aa24.72■■□□□ 1.55
GPNMB-214ENST00000492858 NCAPD3P42695 1498 aa24.57■■□□□ 1.52
GPNMB-214ENST00000492858 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
GPNMB-214ENST00000492858 NESP48681 1621 aa24.39■■□□□ 1.49
GPNMB-214ENST00000492858 HMGXB3Q12766 1538 aa24.32■■□□□ 1.48
GPNMB-214ENST00000492858 SMARCA2P51531 1590 aa24.31■■□□□ 1.48
GPNMB-214ENST00000492858 SMARCA4P51532 1647 aa24.24■■□□□ 1.47
GPNMB-214ENST00000492858 THOC2Q8NI27 1593 aaKnown RBP24.2■■□□□ 1.47
GPNMB-214ENST00000492858 TRIM41Q8WV44 630 aa24.17■■□□□ 1.46
GPNMB-214ENST00000492858 BAZ1BQ9UIG0 1483 aaKnown RBP24.17■■□□□ 1.46
GPNMB-214ENST00000492858 LAMC3Q9Y6N6 1575 aa24.08■■□□□ 1.45
GPNMB-214ENST00000492858 BAZ1AQ9NRL2 1556 aaPredicted RBP24.03■■□□□ 1.44
GPNMB-214ENST00000492858 PDS5BQ9NTI5 1447 aa24.01■■□□□ 1.43
GPNMB-214ENST00000492858 PEG3Q9GZU2 1588 aa23.99■■□□□ 1.43
GPNMB-214ENST00000492858 KIF21AQ7Z4S6 1674 aa23.99■■□□□ 1.43
GPNMB-214ENST00000492858 MROH2BQ7Z745 1585 aa23.84■■□□□ 1.41
GPNMB-214ENST00000492858 MRC2Q9UBG0 1479 aa23.82■■□□□ 1.4
GPNMB-214ENST00000492858 CADPSQ9ULU8 1353 aa23.81■■□□□ 1.4
GPNMB-214ENST00000492858 WDR62O43379 1518 aa23.76■■□□□ 1.39
GPNMB-214ENST00000492858 OSCARQ8IYS5 282 aa23.63■■□□□ 1.37
GPNMB-214ENST00000492858 CEP164Q9UPV0 1460 aa23.62■■□□□ 1.37
GPNMB-214ENST00000492858 FANCD2Q9BXW9 1451 aa23.55■■□□□ 1.36
GPNMB-214ENST00000492858 WIZO95785 1651 aa23.51■■□□□ 1.35
GPNMB-214ENST00000492858 CFTRP13569 1480 aa23.42■■□□□ 1.34
GPNMB-214ENST00000492858 URB2Q14146 1524 aaKnown RBP23.38■■□□□ 1.33
GPNMB-214ENST00000492858 RIMBP3CA6NJZ7 1639 aa23.35■■□□□ 1.33
GPNMB-214ENST00000492858 RIMBP3BA6NNM3 1639 aa23.35■■□□□ 1.33
GPNMB-214ENST00000492858 RIMBP3Q9UFD9 1639 aa23.35■■□□□ 1.33
GPNMB-214ENST00000492858 ARHGEF11O15085 1522 aa23.23■■□□□ 1.31
GPNMB-214ENST00000492858 ZNF608Q9ULD9 1512 aaPredicted RBP23.2■■□□□ 1.3
GPNMB-214ENST00000492858 TOP2AP11388 1531 aaKnown RBP23.18■■□□□ 1.3
GPNMB-214ENST00000492858 IFT140Q96RY7 1462 aa23.17■■□□□ 1.3
GPNMB-214ENST00000492858 RSF1Q96T23 1441 aaPredicted RBP23.16■■□□□ 1.3
GPNMB-214ENST00000492858 CYB5RLQ6IPT4 315 aa23.15■■□□□ 1.3
GPNMB-214ENST00000492858 TRHP20396 242 aaPredicted RBP23.08■■□□□ 1.29
GPNMB-214ENST00000492858 TOPBP1Q92547 1522 aa23.03■■□□□ 1.28
GPNMB-214ENST00000492858 PRDM2Q13029 1718 aa23.03■■□□□ 1.28
GPNMB-214ENST00000492858 EIF4G3O43432 1585 aaKnown RBP23.01■■□□□ 1.27
GPNMB-214ENST00000492858 ARAP1Q96P48 1450 aa22.98■■□□□ 1.27
GPNMB-214ENST00000492858 CCDC88BA6NC98 1476 aa22.94■■□□□ 1.26
GPNMB-214ENST00000492858 AQRO60306 1485 aaKnown RBP eCLIP22.92■■□□□ 1.26
GPNMB-214ENST00000492858 FBLN2P98095 1184 aa22.92■■□□□ 1.26
GPNMB-214ENST00000492858 ABCC8Q09428 1581 aa22.92■■□□□ 1.26
GPNMB-214ENST00000492858 CHD1O14646 1710 aa22.91■■□□□ 1.26
GPNMB-214ENST00000492858 DNMBPQ6XZF7 1577 aa22.88■■□□□ 1.25
GPNMB-214ENST00000492858 TARBP1Q13395 1621 aaKnown RBP22.84■■□□□ 1.25
GPNMB-214ENST00000492858 AEBP2Q6ZN18 517 aaPredicted RBP22.81■■□□□ 1.24
GPNMB-214ENST00000492858 POLA1P09884 1462 aaPredicted RBP22.77■■□□□ 1.24
GPNMB-214ENST00000492858 TDRD9Q8NDG6 1382 aaKnown RBP22.71■■□□□ 1.23
GPNMB-214ENST00000492858 RAD54L2Q9Y4B4 1467 aa22.71■■□□□ 1.23
GPNMB-214ENST00000492858 SNAPC4Q5SXM2 1469 aa22.67■■□□□ 1.22
GPNMB-214ENST00000492858 CLASP1Q7Z460 1538 aa22.67■■□□□ 1.22
GPNMB-214ENST00000492858 SOGA1O94964 1423 aa22.66■■□□□ 1.22
GPNMB-214ENST00000492858 CHMP7Q8WUX9 453 aaPredicted RBP22.64■■□□□ 1.21
GPNMB-214ENST00000492858 SYNJ1O43426 1573 aa22.6■■□□□ 1.21
GPNMB-214ENST00000492858 MAGI1Q96QZ7 1491 aaPredicted RBP22.57■■□□□ 1.2
GPNMB-214ENST00000492858 WDR97A6NE52 1622 aa22.55■■□□□ 1.2
GPNMB-214ENST00000492858 FGD5Q6ZNL6 1462 aa22.54■■□□□ 1.2
GPNMB-214ENST00000492858 GRIN2BQ13224 1484 aa22.53■■□□□ 1.2
GPNMB-214ENST00000492858 SYNJ2O15056 1496 aa22.51■■□□□ 1.19
GPNMB-214ENST00000492858 GAPVD1Q14C86 1478 aa22.49■■□□□ 1.19
GPNMB-214ENST00000492858 CUX1P39880 1505 aa22.44■■□□□ 1.18
GPNMB-214ENST00000492858 PBRM1Q86U86 1689 aa22.33■■□□□ 1.17
GPNMB-214ENST00000492858 ERCC6L2Q5T890 1561 aa22.29■■□□□ 1.16
GPNMB-214ENST00000492858 ABCA10Q8WWZ4 1543 aa22.25■■□□□ 1.15
GPNMB-214ENST00000492858 ABCA5Q8WWZ7 1642 aa22.24■■□□□ 1.15
GPNMB-214ENST00000492858 GRIN2AQ12879 1464 aa22.22■■□□□ 1.15
GPNMB-214ENST00000492858 CEP170Q5SW79 1584 aa22.2■■□□□ 1.14
GPNMB-214ENST00000492858 NUP160Q12769 1436 aa22.17■■□□□ 1.14
GPNMB-214ENST00000492858 ADAMTS12P58397 1594 aa22.12■■□□□ 1.13
GPNMB-214ENST00000492858 SHROOM2Q13796 1616 aa22.09■■□□□ 1.13
GPNMB-214ENST00000492858 KIF13AQ9H1H9 1805 aa22.08■■□□□ 1.13
GPNMB-214ENST00000492858 WRNQ14191 1432 aaPredicted RBP eCLIP22.07■■□□□ 1.12
GPNMB-214ENST00000492858 FHAD1B1AJZ9 1412 aa22.06■■□□□ 1.12
GPNMB-214ENST00000492858 PRG4Q92954 1404 aaPredicted RBP22.02■■□□□ 1.12
GPNMB-214ENST00000492858 FAM69CQ0P6D2 419 aa22.01■■□□□ 1.11
GPNMB-214ENST00000492858 ABCC10Q5T3U5 1492 aa21.97■■□□□ 1.11
GPNMB-214ENST00000492858 JPH4Q96JJ6 628 aa21.97■■□□□ 1.11
GPNMB-214ENST00000492858 ERICH3Q5RHP9 1530 aa21.95■■□□□ 1.1
GPNMB-214ENST00000492858 NPM1P06748 294 aaKnown RBP eCLIP21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms