RNA–Protein interactions for RNA: ENST00000492851.1

COL6A1-205, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 435 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-205ENST00000492851 NISCHQ9Y2I1 1504 aa30.8■■■□□ 2.52
COL6A1-205ENST00000492851 CCDC180Q9P1Z9 1646 aa27.55■■■□□ 2
COL6A1-205ENST00000492851 ABCC9O60706 1549 aa27.41■■□□□ 1.98
COL6A1-205ENST00000492851 RB1CC1Q8TDY2 1594 aa26.21■■□□□ 1.79
COL6A1-205ENST00000492851 NACADO15069 1562 aa26.08■■□□□ 1.77
COL6A1-205ENST00000492851 DCAF8L2P0C7V8 631 aa26.02■■□□□ 1.76
COL6A1-205ENST00000492851 MYO15BQ96JP2 1530 aa25.81■■□□□ 1.72
COL6A1-205ENST00000492851 DNAJC5BQ9UF47 199 aa25.59■■□□□ 1.69
COL6A1-205ENST00000492851 PABPN1Q86U42 306 aaKnown RBP eCLIP25.58■■□□□ 1.695e-7■■□□□ 12
COL6A1-205ENST00000492851 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
COL6A1-205ENST00000492851 DCAF1Q9Y4B6 1507 aa25.51■■□□□ 1.67
COL6A1-205ENST00000492851 UNC13AQ9UPW8 1703 aa25.42■■□□□ 1.66
COL6A1-205ENST00000492851 BICRAQ9NZM4 1560 aa25.34■■□□□ 1.65
COL6A1-205ENST00000492851 SHROOM4Q9ULL8 1493 aa25.18■■□□□ 1.62
COL6A1-205ENST00000492851 SCRIBQ14160 1630 aa25.04■■□□□ 1.6
COL6A1-205ENST00000492851 EIF4G1Q04637 1599 aaKnown RBP24.76■■□□□ 1.55
COL6A1-205ENST00000492851 CC2D2AQ9P2K1 1620 aa24.75■■□□□ 1.55
COL6A1-205ENST00000492851 CECR2Q9BXF3 1484 aa24.72■■□□□ 1.55
COL6A1-205ENST00000492851 NCAPD3P42695 1498 aa24.1■■□□□ 1.45
COL6A1-205ENST00000492851 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
COL6A1-205ENST00000492851 SMARCA2P51531 1590 aa23.96■■□□□ 1.43
COL6A1-205ENST00000492851 SMARCA4P51532 1647 aa23.95■■□□□ 1.42
COL6A1-205ENST00000492851 BAZ1AQ9NRL2 1556 aaPredicted RBP23.92■■□□□ 1.42
COL6A1-205ENST00000492851 HMGXB3Q12766 1538 aa23.88■■□□□ 1.41
COL6A1-205ENST00000492851 BAZ1BQ9UIG0 1483 aaKnown RBP23.78■■□□□ 1.4
COL6A1-205ENST00000492851 PEG3Q9GZU2 1588 aa23.76■■□□□ 1.39
COL6A1-205ENST00000492851 ERCC6Q03468 1493 aa23.73■■□□□ 1.39
COL6A1-205ENST00000492851 MROH2BQ7Z745 1585 aa23.68■■□□□ 1.38
COL6A1-205ENST00000492851 CUX2O14529 1486 aa23.65■■□□□ 1.38
COL6A1-205ENST00000492851 NESP48681 1621 aa23.54■■□□□ 1.36
COL6A1-205ENST00000492851 DNAJC5Q9H3Z4 198 aa23.52■■□□□ 1.36
COL6A1-205ENST00000492851 LAMC3Q9Y6N6 1575 aa23.5■■□□□ 1.35
COL6A1-205ENST00000492851 PDS5BQ9NTI5 1447 aa23.43■■□□□ 1.34
COL6A1-205ENST00000492851 CADPSQ9ULU8 1353 aa23.39■■□□□ 1.33
COL6A1-205ENST00000492851 WIZO95785 1651 aa23.36■■□□□ 1.33
COL6A1-205ENST00000492851 RSF1Q96T23 1441 aaPredicted RBP23.29■■□□□ 1.32
COL6A1-205ENST00000492851 THOC2Q8NI27 1593 aaKnown RBP23.26■■□□□ 1.31
COL6A1-205ENST00000492851 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
COL6A1-205ENST00000492851 TOP2AP11388 1531 aaKnown RBP23.15■■□□□ 1.3
COL6A1-205ENST00000492851 MRC2Q9UBG0 1479 aa23.14■■□□□ 1.29
COL6A1-205ENST00000492851 CFTRP13569 1480 aa23.11■■□□□ 1.29
COL6A1-205ENST00000492851 CEP164Q9UPV0 1460 aa23.08■■□□□ 1.29
COL6A1-205ENST00000492851 FANCD2Q9BXW9 1451 aa23.06■■□□□ 1.28
COL6A1-205ENST00000492851 WDR62O43379 1518 aa23.05■■□□□ 1.28
COL6A1-205ENST00000492851 CCDC88BA6NC98 1476 aa22.9■■□□□ 1.26
COL6A1-205ENST00000492851 URB2Q14146 1524 aaKnown RBP22.81■■□□□ 1.24
COL6A1-205ENST00000492851 PRDM2Q13029 1718 aa22.75■■□□□ 1.23
COL6A1-205ENST00000492851 ABCC8Q09428 1581 aa22.71■■□□□ 1.23
COL6A1-205ENST00000492851 OSCARQ8IYS5 282 aa22.68■■□□□ 1.22
COL6A1-205ENST00000492851 IFT140Q96RY7 1462 aa22.64■■□□□ 1.21
COL6A1-205ENST00000492851 TOPBP1Q92547 1522 aa22.62■■□□□ 1.21
COL6A1-205ENST00000492851 DNMBPQ6XZF7 1577 aa22.55■■□□□ 1.2
COL6A1-205ENST00000492851 ZNF608Q9ULD9 1512 aaPredicted RBP22.49■■□□□ 1.19
COL6A1-205ENST00000492851 TRIM41Q8WV44 630 aa22.49■■□□□ 1.19
COL6A1-205ENST00000492851 SUPT5HO00267 1087 aaKnown RBP22.39■■□□□ 1.17
COL6A1-205ENST00000492851 POLA1P09884 1462 aaPredicted RBP22.39■■□□□ 1.17
COL6A1-205ENST00000492851 TARBP1Q13395 1621 aaKnown RBP22.37■■□□□ 1.17
COL6A1-205ENST00000492851 SOGA1O94964 1423 aa22.37■■□□□ 1.17
COL6A1-205ENST00000492851 EIF4G3O43432 1585 aaKnown RBP22.36■■□□□ 1.17
COL6A1-205ENST00000492851 AQRO60306 1485 aaKnown RBP eCLIP22.35■■□□□ 1.17
COL6A1-205ENST00000492851 RAD54L2Q9Y4B4 1467 aa22.28■■□□□ 1.16
COL6A1-205ENST00000492851 FGD5Q6ZNL6 1462 aa22.27■■□□□ 1.16
COL6A1-205ENST00000492851 TDRD9Q8NDG6 1382 aaKnown RBP22.26■■□□□ 1.15
COL6A1-205ENST00000492851 FBLN2P98095 1184 aa22.26■■□□□ 1.15
COL6A1-205ENST00000492851 WDR97A6NE52 1622 aa22.25■■□□□ 1.15
COL6A1-205ENST00000492851 CUX1P39880 1505 aa22.24■■□□□ 1.15
COL6A1-205ENST00000492851 RIMBP3CA6NJZ7 1639 aa22.17■■□□□ 1.14
COL6A1-205ENST00000492851 RIMBP3BA6NNM3 1639 aa22.17■■□□□ 1.14
COL6A1-205ENST00000492851 RIMBP3Q9UFD9 1639 aa22.17■■□□□ 1.14
COL6A1-205ENST00000492851 ARHGEF11O15085 1522 aa22.16■■□□□ 1.14
COL6A1-205ENST00000492851 CHMP7Q8WUX9 453 aaPredicted RBP22.16■■□□□ 1.14
COL6A1-205ENST00000492851 GRIN2BQ13224 1484 aa22.15■■□□□ 1.14
COL6A1-205ENST00000492851 MAGI1Q96QZ7 1491 aaPredicted RBP22.13■■□□□ 1.13
COL6A1-205ENST00000492851 CHD1O14646 1710 aa22.12■■□□□ 1.13
COL6A1-205ENST00000492851 SNAPC4Q5SXM2 1469 aa22.11■■□□□ 1.13
COL6A1-205ENST00000492851 CYB5RLQ6IPT4 315 aa22.08■■□□□ 1.13
COL6A1-205ENST00000492851 GAPVD1Q14C86 1478 aa22.07■■□□□ 1.12
COL6A1-205ENST00000492851 ABCA10Q8WWZ4 1543 aa22.06■■□□□ 1.12
COL6A1-205ENST00000492851 WRNQ14191 1432 aaPredicted RBP eCLIP22.06■■□□□ 1.12
COL6A1-205ENST00000492851 SYNJ2O15056 1496 aa22.04■■□□□ 1.12
COL6A1-205ENST00000492851 SYNJ1O43426 1573 aa22.01■■□□□ 1.11
COL6A1-205ENST00000492851 CLASP1Q7Z460 1538 aa21.95■■□□□ 1.1
COL6A1-205ENST00000492851 TOP2BQ02880 1626 aa21.95■■□□□ 1.1
COL6A1-205ENST00000492851 ABCA5Q8WWZ7 1642 aa21.94■■□□□ 1.1
COL6A1-205ENST00000492851 ARAP1Q96P48 1450 aa21.93■■□□□ 1.1
COL6A1-205ENST00000492851 PBRM1Q86U86 1689 aa21.92■■□□□ 1.1
COL6A1-205ENST00000492851 BIVM-ERCC5R4GMW8 1640 aa21.91■■□□□ 1.1
COL6A1-205ENST00000492851 GRIN2AQ12879 1464 aa21.83■■□□□ 1.08
COL6A1-205ENST00000492851 FHAD1B1AJZ9 1412 aa21.82■■□□□ 1.08
COL6A1-205ENST00000492851 TRHP20396 242 aaPredicted RBP21.82■■□□□ 1.08
COL6A1-205ENST00000492851 ERICH3Q5RHP9 1530 aa21.8■■□□□ 1.08
COL6A1-205ENST00000492851 ADAMTS12P58397 1594 aa21.76■■□□□ 1.07
COL6A1-205ENST00000492851 NUP160Q12769 1436 aa21.75■■□□□ 1.07
COL6A1-205ENST00000492851 CEP170Q5SW79 1584 aa21.66■■□□□ 1.06
COL6A1-205ENST00000492851 KIF27Q86VH2 1401 aa21.63■■□□□ 1.05
COL6A1-205ENST00000492851 JPH4Q96JJ6 628 aa21.61■■□□□ 1.05
COL6A1-205ENST00000492851 SHROOM2Q13796 1616 aa21.58■■□□□ 1.05
COL6A1-205ENST00000492851 IGF1RP08069 1367 aa21.57■■□□□ 1.04
COL6A1-205ENST00000492851 ERCC6L2Q5T890 1561 aa21.55■■□□□ 1.04
COL6A1-205ENST00000492851 PRG4Q92954 1404 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms