RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 NISCHQ9Y2I1 1504 aa33.51■■■□□ 2.95
HDAC3-213ENST00000492506 ABCC9O60706 1549 aa30.52■■■□□ 2.48
HDAC3-213ENST00000492506 CCDC180Q9P1Z9 1646 aa30.26■■■□□ 2.44
HDAC3-213ENST00000492506 DNAJC5BQ9UF47 199 aa29.01■■■□□ 2.23
HDAC3-213ENST00000492506 RB1CC1Q8TDY2 1594 aa28.92■■■□□ 2.22
HDAC3-213ENST00000492506 NACADO15069 1562 aa28.65■■■□□ 2.18
HDAC3-213ENST00000492506 UNC13AQ9UPW8 1703 aa28.4■■■□□ 2.14
HDAC3-213ENST00000492506 PABPN1Q86U42 306 aaKnown RBP eCLIP28.34■■■□□ 2.13
HDAC3-213ENST00000492506 DCAF8L2P0C7V8 631 aa28.3■■■□□ 2.12
HDAC3-213ENST00000492506 BICRAQ9NZM4 1560 aa28.17■■■□□ 2.1
HDAC3-213ENST00000492506 MYO15BQ96JP2 1530 aa28.16■■■□□ 2.1
HDAC3-213ENST00000492506 ZCCHC6Q5VYS8 1495 aaKnown RBP27.7■■■□□ 2.02
HDAC3-213ENST00000492506 SHROOM4Q9ULL8 1493 aa27.68■■■□□ 2.02
HDAC3-213ENST00000492506 DCAF1Q9Y4B6 1507 aa27.67■■■□□ 2.02
HDAC3-213ENST00000492506 CC2D2AQ9P2K1 1620 aa27.61■■■□□ 2.01
HDAC3-213ENST00000492506 CECR2Q9BXF3 1484 aa27.53■■■□□ 2
HDAC3-213ENST00000492506 SCRIBQ14160 1630 aa27.5■■□□□ 1.99
HDAC3-213ENST00000492506 EIF4G1Q04637 1599 aaKnown RBP27.46■■□□□ 1.99
HDAC3-213ENST00000492506 DNAJC5Q9H3Z4 198 aa26.85■■□□□ 1.89
HDAC3-213ENST00000492506 CUX2O14529 1486 aa26.45■■□□□ 1.82
HDAC3-213ENST00000492506 NCAPD3P42695 1498 aa26.45■■□□□ 1.82
HDAC3-213ENST00000492506 ERCC6Q03468 1493 aa26.33■■□□□ 1.81
HDAC3-213ENST00000492506 ATAD2BQ9ULI0 1458 aa26.32■■□□□ 1.8
HDAC3-213ENST00000492506 SMARCA4P51532 1647 aa26.23■■□□□ 1.79
HDAC3-213ENST00000492506 HMGXB3Q12766 1538 aa26.23■■□□□ 1.79
HDAC3-213ENST00000492506 SMARCA2P51531 1590 aa26.21■■□□□ 1.79
HDAC3-213ENST00000492506 NESP48681 1621 aa26.16■■□□□ 1.78
HDAC3-213ENST00000492506 BAZ1AQ9NRL2 1556 aaPredicted RBP26.01■■□□□ 1.75
HDAC3-213ENST00000492506 BAZ1BQ9UIG0 1483 aaKnown RBP26.01■■□□□ 1.75
HDAC3-213ENST00000492506 THOC2Q8NI27 1593 aaKnown RBP26■■□□□ 1.75
HDAC3-213ENST00000492506 PEG3Q9GZU2 1588 aa26■■□□□ 1.75
HDAC3-213ENST00000492506 LAMC3Q9Y6N6 1575 aa25.91■■□□□ 1.74
HDAC3-213ENST00000492506 KIF21AQ7Z4S6 1674 aa25.86■■□□□ 1.73
HDAC3-213ENST00000492506 MROH2BQ7Z745 1585 aa25.82■■□□□ 1.72
HDAC3-213ENST00000492506 PDS5BQ9NTI5 1447 aa25.72■■□□□ 1.71
HDAC3-213ENST00000492506 CADPSQ9ULU8 1353 aa25.6■■□□□ 1.69
HDAC3-213ENST00000492506 MRC2Q9UBG0 1479 aa25.54■■□□□ 1.68
HDAC3-213ENST00000492506 WDR62O43379 1518 aa25.54■■□□□ 1.68
HDAC3-213ENST00000492506 WIZO95785 1651 aa25.52■■□□□ 1.68
HDAC3-213ENST00000492506 TRIM41Q8WV44 630 aa25.45■■□□□ 1.66
HDAC3-213ENST00000492506 CEP164Q9UPV0 1460 aa25.36■■□□□ 1.65
HDAC3-213ENST00000492506 FANCD2Q9BXW9 1451 aa25.31■■□□□ 1.64
HDAC3-213ENST00000492506 CFTRP13569 1480 aa25.27■■□□□ 1.64
HDAC3-213ENST00000492506 URB2Q14146 1524 aaKnown RBP25.17■■□□□ 1.62
HDAC3-213ENST00000492506 OSCARQ8IYS5 282 aa25.15■■□□□ 1.62
HDAC3-213ENST00000492506 RSF1Q96T23 1441 aaPredicted RBP25.13■■□□□ 1.61
HDAC3-213ENST00000492506 TOP2AP11388 1531 aaKnown RBP25.13■■□□□ 1.61
HDAC3-213ENST00000492506 PRDM2Q13029 1718 aa25.07■■□□□ 1.6
HDAC3-213ENST00000492506 RIMBP3CA6NJZ7 1639 aa24.95■■□□□ 1.58
HDAC3-213ENST00000492506 RIMBP3BA6NNM3 1639 aa24.95■■□□□ 1.58
HDAC3-213ENST00000492506 RIMBP3Q9UFD9 1639 aa24.95■■□□□ 1.58
HDAC3-213ENST00000492506 ZNF608Q9ULD9 1512 aaPredicted RBP24.91■■□□□ 1.58
HDAC3-213ENST00000492506 IFT140Q96RY7 1462 aa24.87■■□□□ 1.57
HDAC3-213ENST00000492506 CCDC88BA6NC98 1476 aa24.85■■□□□ 1.57
HDAC3-213ENST00000492506 TOPBP1Q92547 1522 aa24.81■■□□□ 1.56
HDAC3-213ENST00000492506 ARHGEF11O15085 1522 aa24.81■■□□□ 1.56
HDAC3-213ENST00000492506 EIF4G3O43432 1585 aaKnown RBP24.76■■□□□ 1.55
HDAC3-213ENST00000492506 ABCC8Q09428 1581 aa24.71■■□□□ 1.55
HDAC3-213ENST00000492506 DNMBPQ6XZF7 1577 aa24.7■■□□□ 1.54
HDAC3-213ENST00000492506 CHD1O14646 1710 aa24.69■■□□□ 1.54
HDAC3-213ENST00000492506 TARBP1Q13395 1621 aaKnown RBP24.68■■□□□ 1.54
HDAC3-213ENST00000492506 AQRO60306 1485 aaKnown RBP eCLIP24.62■■□□□ 1.532e-26■■■■■ 39.4
HDAC3-213ENST00000492506 CYB5RLQ6IPT4 315 aa24.58■■□□□ 1.53
HDAC3-213ENST00000492506 ARAP1Q96P48 1450 aa24.55■■□□□ 1.52
HDAC3-213ENST00000492506 POLA1P09884 1462 aaPredicted RBP24.54■■□□□ 1.52
HDAC3-213ENST00000492506 RAD54L2Q9Y4B4 1467 aa24.45■■□□□ 1.51
HDAC3-213ENST00000492506 FBLN2P98095 1184 aa24.43■■□□□ 1.5
HDAC3-213ENST00000492506 SOGA1O94964 1423 aa24.39■■□□□ 1.5
HDAC3-213ENST00000492506 TDRD9Q8NDG6 1382 aaKnown RBP24.39■■□□□ 1.49
HDAC3-213ENST00000492506 TRHP20396 242 aaPredicted RBP24.38■■□□□ 1.49
HDAC3-213ENST00000492506 CLASP1Q7Z460 1538 aa24.37■■□□□ 1.49
HDAC3-213ENST00000492506 WDR97A6NE52 1622 aa24.36■■□□□ 1.49
HDAC3-213ENST00000492506 SNAPC4Q5SXM2 1469 aa24.34■■□□□ 1.49
HDAC3-213ENST00000492506 FGD5Q6ZNL6 1462 aa24.32■■□□□ 1.48
HDAC3-213ENST00000492506 CUX1P39880 1505 aa24.28■■□□□ 1.48
HDAC3-213ENST00000492506 MAGI1Q96QZ7 1491 aaPredicted RBP24.27■■□□□ 1.48
HDAC3-213ENST00000492506 SYNJ1O43426 1573 aa24.27■■□□□ 1.48
HDAC3-213ENST00000492506 GRIN2BQ13224 1484 aa24.22■■□□□ 1.47
HDAC3-213ENST00000492506 CHMP7Q8WUX9 453 aaPredicted RBP24.22■■□□□ 1.47
HDAC3-213ENST00000492506 SYNJ2O15056 1496 aa24.19■■□□□ 1.46
HDAC3-213ENST00000492506 PBRM1Q86U86 1689 aa24.18■■□□□ 1.46
HDAC3-213ENST00000492506 GAPVD1Q14C86 1478 aa24.09■■□□□ 1.45
HDAC3-213ENST00000492506 ABCA5Q8WWZ7 1642 aa24.08■■□□□ 1.45
HDAC3-213ENST00000492506 ABCA10Q8WWZ4 1543 aa24.05■■□□□ 1.44
HDAC3-213ENST00000492506 ERCC6L2Q5T890 1561 aa23.98■■□□□ 1.43
HDAC3-213ENST00000492506 GRIN2AQ12879 1464 aa23.93■■□□□ 1.42
HDAC3-213ENST00000492506 ADAMTS12P58397 1594 aa23.9■■□□□ 1.42
HDAC3-213ENST00000492506 CEP170Q5SW79 1584 aa23.9■■□□□ 1.42
HDAC3-213ENST00000492506 AEBP2Q6ZN18 517 aaPredicted RBP23.89■■□□□ 1.41
HDAC3-213ENST00000492506 NUP160Q12769 1436 aa23.88■■□□□ 1.41
HDAC3-213ENST00000492506 SHROOM2Q13796 1616 aa23.87■■□□□ 1.41
HDAC3-213ENST00000492506 WRNQ14191 1432 aaPredicted RBP eCLIP23.83■■□□□ 1.4
HDAC3-213ENST00000492506 BIVM-ERCC5R4GMW8 1640 aa23.82■■□□□ 1.4
HDAC3-213ENST00000492506 TOP2BQ02880 1626 aa23.8■■□□□ 1.4
HDAC3-213ENST00000492506 KIF13AQ9H1H9 1805 aa23.77■■□□□ 1.4
HDAC3-213ENST00000492506 FHAD1B1AJZ9 1412 aa23.76■■□□□ 1.39
HDAC3-213ENST00000492506 ERICH3Q5RHP9 1530 aa23.73■■□□□ 1.39
HDAC3-213ENST00000492506 SUPT5HO00267 1087 aaKnown RBP23.67■■□□□ 1.38
HDAC3-213ENST00000492506 PRG4Q92954 1404 aaPredicted RBP23.63■■□□□ 1.37
HDAC3-213ENST00000492506 JPH4Q96JJ6 628 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms