RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 NISCHQ9Y2I1 1504 aa22.49■■□□□ 1.19
USP54-214ENST00000492357 CCDC180Q9P1Z9 1646 aa19.89■□□□□ 0.77
USP54-214ENST00000492357 AEBP2Q6ZN18 517 aaPredicted RBP19.5■□□□□ 0.71
USP54-214ENST00000492357 CHIC1Q5VXU3 224 aa19.19■□□□□ 0.66
USP54-214ENST00000492357 ZCCHC6Q5VYS8 1495 aaKnown RBP18.87■□□□□ 0.61
USP54-214ENST00000492357 DCAF1Q9Y4B6 1507 aa18.79■□□□□ 0.6
USP54-214ENST00000492357 MYO15BQ96JP2 1530 aa18.71■□□□□ 0.59
USP54-214ENST00000492357 ABCC9O60706 1549 aa18.67■□□□□ 0.58
USP54-214ENST00000492357 NACADO15069 1562 aa18.54■□□□□ 0.56
USP54-214ENST00000492357 RB1CC1Q8TDY2 1594 aa18.39■□□□□ 0.53
USP54-214ENST00000492357 DCAF8L2P0C7V8 631 aa18.31■□□□□ 0.52
USP54-214ENST00000492357 SCRIBQ14160 1630 aa17.96■□□□□ 0.47
USP54-214ENST00000492357 UNC13AQ9UPW8 1703 aa17.89■□□□□ 0.46
USP54-214ENST00000492357 SHROOM4Q9ULL8 1493 aa17.85■□□□□ 0.45
USP54-214ENST00000492357 BICRAQ9NZM4 1560 aa17.74■□□□□ 0.43
USP54-214ENST00000492357 BAZ1AQ9NRL2 1556 aaPredicted RBP17.45■□□□□ 0.38
USP54-214ENST00000492357 PABPN1Q86U42 306 aaKnown RBP eCLIP17.45■□□□□ 0.38
USP54-214ENST00000492357 SMARCA4P51532 1647 aa17.34■□□□□ 0.37
USP54-214ENST00000492357 CECR2Q9BXF3 1484 aa17.33■□□□□ 0.37
USP54-214ENST00000492357 RSF1Q96T23 1441 aaPredicted RBP17.29■□□□□ 0.36
USP54-214ENST00000492357 MROH2BQ7Z745 1585 aa17.26■□□□□ 0.35
USP54-214ENST00000492357 PEG3Q9GZU2 1588 aa17.26■□□□□ 0.35
USP54-214ENST00000492357 EIF4G1Q04637 1599 aaKnown RBP17.24■□□□□ 0.35
USP54-214ENST00000492357 SMARCA2P51531 1590 aa17.18■□□□□ 0.34
USP54-214ENST00000492357 ATAD2BQ9ULI0 1458 aa17.09■□□□□ 0.33
USP54-214ENST00000492357 WIZO95785 1651 aa17.09■□□□□ 0.33
USP54-214ENST00000492357 HMGXB3Q12766 1538 aa17.07■□□□□ 0.32
USP54-214ENST00000492357 SUPT5HO00267 1087 aaKnown RBP17.07■□□□□ 0.32
USP54-214ENST00000492357 NCAPD3P42695 1498 aa17.06■□□□□ 0.32
USP54-214ENST00000492357 TOP2AP11388 1531 aaKnown RBP17.05■□□□□ 0.32
USP54-214ENST00000492357 CC2D2AQ9P2K1 1620 aa17■□□□□ 0.31
USP54-214ENST00000492357 BAZ1BQ9UIG0 1483 aaKnown RBP16.98■□□□□ 0.31
USP54-214ENST00000492357 PHF23Q9BUL5 403 aaPredicted RBP16.9■□□□□ 0.3
USP54-214ENST00000492357 CCDC88BA6NC98 1476 aa16.76■□□□□ 0.27
USP54-214ENST00000492357 CFTRP13569 1480 aa16.59■□□□□ 0.25
USP54-214ENST00000492357 PRDM2Q13029 1718 aa16.57■□□□□ 0.24
USP54-214ENST00000492357 LAMC3Q9Y6N6 1575 aa16.55■□□□□ 0.24
USP54-214ENST00000492357 CADPSQ9ULU8 1353 aa16.55■□□□□ 0.24
USP54-214ENST00000492357 DNAJC5BQ9UF47 199 aa16.55■□□□□ 0.24
USP54-214ENST00000492357 SENP3Q9H4L4 574 aaPredicted RBP16.53■□□□□ 0.24
USP54-214ENST00000492357 PDS5BQ9NTI5 1447 aa16.39■□□□□ 0.21
USP54-214ENST00000492357 FANCD2Q9BXW9 1451 aa16.33■□□□□ 0.2
USP54-214ENST00000492357 WRNQ14191 1432 aaPredicted RBP eCLIP16.31■□□□□ 0.2
USP54-214ENST00000492357 NESP48681 1621 aa16.3■□□□□ 0.2
USP54-214ENST00000492357 ABCC8Q09428 1581 aa16.3■□□□□ 0.2
USP54-214ENST00000492357 CEP164Q9UPV0 1460 aa16.29■□□□□ 0.2
USP54-214ENST00000492357 BIVM-ERCC5R4GMW8 1640 aa16.27■□□□□ 0.2
USP54-214ENST00000492357 TOP2BQ02880 1626 aa16.27■□□□□ 0.19
USP54-214ENST00000492357 DNMBPQ6XZF7 1577 aa16.21■□□□□ 0.19
USP54-214ENST00000492357 TRIM41Q8WV44 630 aa16.21■□□□□ 0.19
USP54-214ENST00000492357 KIF21AQ7Z4S6 1674 aa16.21■□□□□ 0.18
USP54-214ENST00000492357 SYNJ1O43426 1573 aa16.2■□□□□ 0.18
USP54-214ENST00000492357 CUX1P39880 1505 aa16.18■□□□□ 0.18
USP54-214ENST00000492357 MRC2Q9UBG0 1479 aa16.16■□□□□ 0.18
USP54-214ENST00000492357 TOPBP1Q92547 1522 aa16.14■□□□□ 0.17
USP54-214ENST00000492357 EEA1Q15075 1411 aa16.11■□□□□ 0.17
USP54-214ENST00000492357 ERCC6Q03468 1493 aa16.11■□□□□ 0.17
USP54-214ENST00000492357 WDR62O43379 1518 aa16.11■□□□□ 0.17
USP54-214ENST00000492357 URB2Q14146 1524 aaKnown RBP16.1■□□□□ 0.17
USP54-214ENST00000492357 THOC2Q8NI27 1593 aaKnown RBP16.07■□□□□ 0.16
USP54-214ENST00000492357 FGD5Q6ZNL6 1462 aa16.05■□□□□ 0.16
USP54-214ENST00000492357 POLA1P09884 1462 aaPredicted RBP16.03■□□□□ 0.16
USP54-214ENST00000492357 WDR97A6NE52 1622 aa16.02■□□□□ 0.16
USP54-214ENST00000492357 ABCA10Q8WWZ4 1543 aa15.99■□□□□ 0.15
USP54-214ENST00000492357 KIF27Q86VH2 1401 aa15.96■□□□□ 0.15
USP54-214ENST00000492357 IFT140Q96RY7 1462 aa15.96■□□□□ 0.14
USP54-214ENST00000492357 SOGA1O94964 1423 aa15.95■□□□□ 0.14
USP54-214ENST00000492357 TARBP1Q13395 1621 aaKnown RBP15.94■□□□□ 0.14
USP54-214ENST00000492357 CUX2O14529 1486 aa15.91■□□□□ 0.14
USP54-214ENST00000492357 ABCA5Q8WWZ7 1642 aa15.87■□□□□ 0.13
USP54-214ENST00000492357 RAD54L2Q9Y4B4 1467 aa15.85■□□□□ 0.13
USP54-214ENST00000492357 CSRNP3Q8WYN3 585 aa15.85■□□□□ 0.13
USP54-214ENST00000492357 ERICH3Q5RHP9 1530 aa15.84■□□□□ 0.13
USP54-214ENST00000492357 KIF21BO75037 1637 aa15.84■□□□□ 0.13
USP54-214ENST00000492357 CUL7Q14999 1698 aa15.82■□□□□ 0.12
USP54-214ENST00000492357 RUSC2Q8N2Y8 1516 aa15.8■□□□□ 0.12
USP54-214ENST00000492357 GAPVD1Q14C86 1478 aa15.8■□□□□ 0.12
USP54-214ENST00000492357 PRXQ9BXM0 1461 aa15.78■□□□□ 0.12
USP54-214ENST00000492357 GRIN2BQ13224 1484 aa15.77■□□□□ 0.11
USP54-214ENST00000492357 IGF1RP08069 1367 aa15.76■□□□□ 0.11
USP54-214ENST00000492357 GOLGA3Q08378 1498 aa15.75■□□□□ 0.11
USP54-214ENST00000492357 PBRM1Q86U86 1689 aa15.75■□□□□ 0.11
USP54-214ENST00000492357 EIF4G3O43432 1585 aaKnown RBP15.75■□□□□ 0.11
USP54-214ENST00000492357 TDRD9Q8NDG6 1382 aaKnown RBP15.73■□□□□ 0.11
USP54-214ENST00000492357 MAGI1Q96QZ7 1491 aaPredicted RBP15.71■□□□□ 0.1
USP54-214ENST00000492357 RAPGEF2Q9Y4G8 1499 aa15.71■□□□□ 0.1
USP54-214ENST00000492357 FAM9AQ8IZU1 332 aaPredicted RBP15.7■□□□□ 0.1
USP54-214ENST00000492357 ZNF608Q9ULD9 1512 aaPredicted RBP15.69■□□□□ 0.1
USP54-214ENST00000492357 CARMIL1Q5VZK9 1371 aa15.69■□□□□ 0.1
USP54-214ENST00000492357 FHAD1B1AJZ9 1412 aa15.68■□□□□ 0.1
USP54-214ENST00000492357 AQRO60306 1485 aaKnown RBP eCLIP15.67■□□□□ 0.1
USP54-214ENST00000492357 PLPPR3Q6T4P5 718 aa15.67■□□□□ 0.1
USP54-214ENST00000492357 ADAMTS12P58397 1594 aa15.66■□□□□ 0.1
USP54-214ENST00000492357 TNIKQ9UKE5 1360 aa15.65■□□□□ 0.1
USP54-214ENST00000492357 SYNJ2O15056 1496 aa15.6■□□□□ 0.09
USP54-214ENST00000492357 SNAPC4Q5SXM2 1469 aa15.59■□□□□ 0.09
USP54-214ENST00000492357 CTTNBP2Q8WZ74 1663 aa15.55■□□□□ 0.08
USP54-214ENST00000492357 GRIN2AQ12879 1464 aa15.54■□□□□ 0.08
USP54-214ENST00000492357 LOC105371045A0A1W2PR82 267 aa15.53■□□□□ 0.08
USP54-214ENST00000492357 UBTFP17480 764 aaKnown RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms