RNA–Protein interactions for RNA: ENST00000492235.1

TREX1-204, Transcript of three prime repair exonuclease 1, humanhuman

TSL 3

Gene TREX1, Length 696 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1-204ENST00000492235 NISCHQ9Y2I1 1504 aa31.66■■■□□ 2.66
TREX1-204ENST00000492235 ABCC9O60706 1549 aa28.77■■■□□ 2.2
TREX1-204ENST00000492235 CCDC180Q9P1Z9 1646 aa28.51■■■□□ 2.15
TREX1-204ENST00000492235 RB1CC1Q8TDY2 1594 aa27.26■■□□□ 1.95
TREX1-204ENST00000492235 DNAJC5BQ9UF47 199 aa27.18■■□□□ 1.94
TREX1-204ENST00000492235 NACADO15069 1562 aa27■■□□□ 1.91
TREX1-204ENST00000492235 DCAF8L2P0C7V8 631 aa26.88■■□□□ 1.89
TREX1-204ENST00000492235 PABPN1Q86U42 306 aaKnown RBP eCLIP26.76■■□□□ 1.87
TREX1-204ENST00000492235 UNC13AQ9UPW8 1703 aa26.68■■□□□ 1.86
TREX1-204ENST00000492235 MYO15BQ96JP2 1530 aa26.51■■□□□ 1.83
TREX1-204ENST00000492235 BICRAQ9NZM4 1560 aa26.48■■□□□ 1.83
TREX1-204ENST00000492235 ZCCHC6Q5VYS8 1495 aaKnown RBP26.19■■□□□ 1.78
TREX1-204ENST00000492235 DCAF1Q9Y4B6 1507 aa26.1■■□□□ 1.77
TREX1-204ENST00000492235 SHROOM4Q9ULL8 1493 aa26.04■■□□□ 1.76
TREX1-204ENST00000492235 SCRIBQ14160 1630 aa26.01■■□□□ 1.75
TREX1-204ENST00000492235 CC2D2AQ9P2K1 1620 aa25.97■■□□□ 1.75
TREX1-204ENST00000492235 CECR2Q9BXF3 1484 aa25.92■■□□□ 1.74
TREX1-204ENST00000492235 EIF4G1Q04637 1599 aaKnown RBP25.85■■□□□ 1.73
TREX1-204ENST00000492235 DNAJC5Q9H3Z4 198 aa25.44■■□□□ 1.66
TREX1-204ENST00000492235 NCAPD3P42695 1498 aa24.92■■□□□ 1.58
TREX1-204ENST00000492235 CUX2O14529 1486 aa24.85■■□□□ 1.57
TREX1-204ENST00000492235 ERCC6Q03468 1493 aa24.85■■□□□ 1.57
TREX1-204ENST00000492235 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.56
TREX1-204ENST00000492235 SMARCA4P51532 1647 aa24.76■■□□□ 1.55
TREX1-204ENST00000492235 SMARCA2P51531 1590 aa24.75■■□□□ 1.55
TREX1-204ENST00000492235 HMGXB3Q12766 1538 aa24.72■■□□□ 1.55
TREX1-204ENST00000492235 NESP48681 1621 aa24.65■■□□□ 1.54
TREX1-204ENST00000492235 BAZ1BQ9UIG0 1483 aaKnown RBP24.59■■□□□ 1.53
TREX1-204ENST00000492235 BAZ1AQ9NRL2 1556 aaPredicted RBP24.59■■□□□ 1.53
TREX1-204ENST00000492235 PEG3Q9GZU2 1588 aa24.49■■□□□ 1.51
TREX1-204ENST00000492235 THOC2Q8NI27 1593 aaKnown RBP24.43■■□□□ 1.5
TREX1-204ENST00000492235 MROH2BQ7Z745 1585 aa24.42■■□□□ 1.5
TREX1-204ENST00000492235 LAMC3Q9Y6N6 1575 aa24.41■■□□□ 1.5
TREX1-204ENST00000492235 KIF21AQ7Z4S6 1674 aa24.34■■□□□ 1.49
TREX1-204ENST00000492235 PDS5BQ9NTI5 1447 aa24.27■■□□□ 1.48
TREX1-204ENST00000492235 TRIM41Q8WV44 630 aa24.19■■□□□ 1.46
TREX1-204ENST00000492235 CADPSQ9ULU8 1353 aa24.16■■□□□ 1.46
TREX1-204ENST00000492235 WIZO95785 1651 aa24.13■■□□□ 1.45
TREX1-204ENST00000492235 MRC2Q9UBG0 1479 aa24.09■■□□□ 1.45
TREX1-204ENST00000492235 WDR62O43379 1518 aa24.04■■□□□ 1.44
TREX1-204ENST00000492235 CEP164Q9UPV0 1460 aa23.95■■□□□ 1.42
TREX1-204ENST00000492235 FANCD2Q9BXW9 1451 aa23.91■■□□□ 1.42
TREX1-204ENST00000492235 CFTRP13569 1480 aa23.84■■□□□ 1.41
TREX1-204ENST00000492235 RSF1Q96T23 1441 aaPredicted RBP23.81■■□□□ 1.4
TREX1-204ENST00000492235 TOP2AP11388 1531 aaKnown RBP23.78■■□□□ 1.4
TREX1-204ENST00000492235 URB2Q14146 1524 aaKnown RBP23.73■■□□□ 1.39
TREX1-204ENST00000492235 OSCARQ8IYS5 282 aa23.69■■□□□ 1.38
TREX1-204ENST00000492235 PRDM2Q13029 1718 aa23.62■■□□□ 1.37
TREX1-204ENST00000492235 CCDC88BA6NC98 1476 aa23.51■■□□□ 1.35
TREX1-204ENST00000492235 ZNF608Q9ULD9 1512 aaPredicted RBP23.48■■□□□ 1.35
TREX1-204ENST00000492235 IFT140Q96RY7 1462 aa23.47■■□□□ 1.35
TREX1-204ENST00000492235 RIMBP3CA6NJZ7 1639 aa23.44■■□□□ 1.34
TREX1-204ENST00000492235 RIMBP3BA6NNM3 1639 aa23.44■■□□□ 1.34
TREX1-204ENST00000492235 RIMBP3Q9UFD9 1639 aa23.44■■□□□ 1.34
TREX1-204ENST00000492235 TOPBP1Q92547 1522 aa23.43■■□□□ 1.34
TREX1-204ENST00000492235 EIF4G3O43432 1585 aaKnown RBP23.35■■□□□ 1.33
TREX1-204ENST00000492235 ABCC8Q09428 1581 aa23.33■■□□□ 1.33
TREX1-204ENST00000492235 ARHGEF11O15085 1522 aa23.33■■□□□ 1.32
TREX1-204ENST00000492235 DNMBPQ6XZF7 1577 aa23.32■■□□□ 1.32
TREX1-204ENST00000492235 TARBP1Q13395 1621 aaKnown RBP23.24■■□□□ 1.31
TREX1-204ENST00000492235 AQRO60306 1485 aaKnown RBP eCLIP23.24■■□□□ 1.31
TREX1-204ENST00000492235 CHD1O14646 1710 aa23.23■■□□□ 1.31
TREX1-204ENST00000492235 CYB5RLQ6IPT4 315 aa23.18■■□□□ 1.3
TREX1-204ENST00000492235 POLA1P09884 1462 aaPredicted RBP23.17■■□□□ 1.3
TREX1-204ENST00000492235 FBLN2P98095 1184 aa23.15■■□□□ 1.3
TREX1-204ENST00000492235 RAD54L2Q9Y4B4 1467 aa23.11■■□□□ 1.29
TREX1-204ENST00000492235 ARAP1Q96P48 1450 aa23.08■■□□□ 1.29
TREX1-204ENST00000492235 TDRD9Q8NDG6 1382 aaKnown RBP23.06■■□□□ 1.28
TREX1-204ENST00000492235 SOGA1O94964 1423 aa23.06■■□□□ 1.28
TREX1-204ENST00000492235 TRHP20396 242 aaPredicted RBP23.03■■□□□ 1.28
TREX1-204ENST00000492235 FGD5Q6ZNL6 1462 aa23■■□□□ 1.27
TREX1-204ENST00000492235 SNAPC4Q5SXM2 1469 aa22.99■■□□□ 1.27
TREX1-204ENST00000492235 WDR97A6NE52 1622 aa22.96■■□□□ 1.27
TREX1-204ENST00000492235 CUX1P39880 1505 aa22.95■■□□□ 1.26
TREX1-204ENST00000492235 CLASP1Q7Z460 1538 aa22.92■■□□□ 1.26
TREX1-204ENST00000492235 CHMP7Q8WUX9 453 aaPredicted RBP22.92■■□□□ 1.26
TREX1-204ENST00000492235 MAGI1Q96QZ7 1491 aaPredicted RBP22.9■■□□□ 1.26
TREX1-204ENST00000492235 SYNJ1O43426 1573 aa22.89■■□□□ 1.26
TREX1-204ENST00000492235 GRIN2BQ13224 1484 aa22.88■■□□□ 1.25
TREX1-204ENST00000492235 AEBP2Q6ZN18 517 aaPredicted RBP22.88■■□□□ 1.25
TREX1-204ENST00000492235 SYNJ2O15056 1496 aa22.84■■□□□ 1.25
TREX1-204ENST00000492235 PBRM1Q86U86 1689 aa22.82■■□□□ 1.24
TREX1-204ENST00000492235 GAPVD1Q14C86 1478 aa22.79■■□□□ 1.24
TREX1-204ENST00000492235 ABCA5Q8WWZ7 1642 aa22.71■■□□□ 1.23
TREX1-204ENST00000492235 ABCA10Q8WWZ4 1543 aa22.7■■□□□ 1.22
TREX1-204ENST00000492235 SUPT5HO00267 1087 aaKnown RBP22.63■■□□□ 1.21
TREX1-204ENST00000492235 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
TREX1-204ENST00000492235 ERCC6L2Q5T890 1561 aa22.58■■□□□ 1.2
TREX1-204ENST00000492235 WRNQ14191 1432 aaPredicted RBP eCLIP22.57■■□□□ 1.2
TREX1-204ENST00000492235 ADAMTS12P58397 1594 aa22.56■■□□□ 1.2
TREX1-204ENST00000492235 CEP170Q5SW79 1584 aa22.54■■□□□ 1.2
TREX1-204ENST00000492235 BIVM-ERCC5R4GMW8 1640 aa22.52■■□□□ 1.2
TREX1-204ENST00000492235 NUP160Q12769 1436 aa22.51■■□□□ 1.19
TREX1-204ENST00000492235 TOP2BQ02880 1626 aa22.51■■□□□ 1.19
TREX1-204ENST00000492235 FHAD1B1AJZ9 1412 aa22.47■■□□□ 1.19
TREX1-204ENST00000492235 SHROOM2Q13796 1616 aa22.45■■□□□ 1.18
TREX1-204ENST00000492235 ERICH3Q5RHP9 1530 aa22.41■■□□□ 1.18
TREX1-204ENST00000492235 PRG4Q92954 1404 aaPredicted RBP22.33■■□□□ 1.17
TREX1-204ENST00000492235 KIF13AQ9H1H9 1805 aa22.31■■□□□ 1.16
TREX1-204ENST00000492235 JPH4Q96JJ6 628 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms