RNA–Protein interactions for RNA: ENST00000491860.1

NUP50-217, Transcript of nucleoporin 50, humanhuman

TSL 2

Gene NUP50, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-217ENST00000491860 NISCHQ9Y2I1 1504 aa21.71■■□□□ 1.07
NUP50-217ENST00000491860 ABCC9O60706 1549 aa19.66■□□□□ 0.74
NUP50-217ENST00000491860 CCDC180Q9P1Z9 1646 aa19.51■□□□□ 0.71
NUP50-217ENST00000491860 DNAJC5BQ9UF47 199 aa18.7■□□□□ 0.58
NUP50-217ENST00000491860 RB1CC1Q8TDY2 1594 aa18.67■□□□□ 0.58
NUP50-217ENST00000491860 NACADO15069 1562 aa18.49■□□□□ 0.55
NUP50-217ENST00000491860 MYO15BQ96JP2 1530 aa18.24■□□□□ 0.51
NUP50-217ENST00000491860 UNC13AQ9UPW8 1703 aa18.24■□□□□ 0.51
NUP50-217ENST00000491860 DCAF8L2P0C7V8 631 aa18.21■□□□□ 0.51
NUP50-217ENST00000491860 PABPN1Q86U42 306 aaKnown RBP eCLIP18.2■□□□□ 0.5
NUP50-217ENST00000491860 BICRAQ9NZM4 1560 aa18.14■□□□□ 0.49
NUP50-217ENST00000491860 DCAF1Q9Y4B6 1507 aa18.02■□□□□ 0.47
NUP50-217ENST00000491860 ZCCHC6Q5VYS8 1495 aaKnown RBP18.01■□□□□ 0.47
NUP50-217ENST00000491860 SHROOM4Q9ULL8 1493 aa17.95■□□□□ 0.46
NUP50-217ENST00000491860 CC2D2AQ9P2K1 1620 aa17.8■□□□□ 0.44
NUP50-217ENST00000491860 CECR2Q9BXF3 1484 aa17.78■□□□□ 0.44
NUP50-217ENST00000491860 EIF4G1Q04637 1599 aaKnown RBP17.7■□□□□ 0.42
NUP50-217ENST00000491860 SCRIBQ14160 1630 aa17.67■□□□□ 0.42
NUP50-217ENST00000491860 DNAJC5Q9H3Z4 198 aa17.45■□□□□ 0.38
NUP50-217ENST00000491860 CUX2O14529 1486 aa17.17■□□□□ 0.34
NUP50-217ENST00000491860 NCAPD3P42695 1498 aa17.06■□□□□ 0.32
NUP50-217ENST00000491860 ERCC6Q03468 1493 aa17■□□□□ 0.31
NUP50-217ENST00000491860 ATAD2BQ9ULI0 1458 aa16.93■□□□□ 0.3
NUP50-217ENST00000491860 SMARCA2P51531 1590 aa16.93■□□□□ 0.3
NUP50-217ENST00000491860 HMGXB3Q12766 1538 aa16.92■□□□□ 0.3
NUP50-217ENST00000491860 SMARCA4P51532 1647 aa16.91■□□□□ 0.3
NUP50-217ENST00000491860 BAZ1AQ9NRL2 1556 aaPredicted RBP16.89■□□□□ 0.3
NUP50-217ENST00000491860 NESP48681 1621 aa16.81■□□□□ 0.28
NUP50-217ENST00000491860 PEG3Q9GZU2 1588 aa16.8■□□□□ 0.28
NUP50-217ENST00000491860 THOC2Q8NI27 1593 aaKnown RBP16.77■□□□□ 0.28
NUP50-217ENST00000491860 BAZ1BQ9UIG0 1483 aaKnown RBP16.76■□□□□ 0.27
NUP50-217ENST00000491860 LAMC3Q9Y6N6 1575 aa16.73■□□□□ 0.27
NUP50-217ENST00000491860 MROH2BQ7Z745 1585 aa16.67■□□□□ 0.26
NUP50-217ENST00000491860 KIF21AQ7Z4S6 1674 aa16.62■□□□□ 0.25
NUP50-217ENST00000491860 PDS5BQ9NTI5 1447 aa16.62■□□□□ 0.25
NUP50-217ENST00000491860 CADPSQ9ULU8 1353 aa16.49■□□□□ 0.23
NUP50-217ENST00000491860 MRC2Q9UBG0 1479 aa16.48■□□□□ 0.23
NUP50-217ENST00000491860 WIZO95785 1651 aa16.48■□□□□ 0.23
NUP50-217ENST00000491860 WDR62O43379 1518 aa16.48■□□□□ 0.23
NUP50-217ENST00000491860 TRIM41Q8WV44 630 aa16.44■□□□□ 0.22
NUP50-217ENST00000491860 RSF1Q96T23 1441 aaPredicted RBP16.38■□□□□ 0.21
NUP50-217ENST00000491860 CEP164Q9UPV0 1460 aa16.35■□□□□ 0.21
NUP50-217ENST00000491860 TOP2AP11388 1531 aaKnown RBP16.35■□□□□ 0.21
NUP50-217ENST00000491860 FANCD2Q9BXW9 1451 aa16.29■□□□□ 0.2
NUP50-217ENST00000491860 CFTRP13569 1480 aa16.28■□□□□ 0.2
NUP50-217ENST00000491860 OSCARQ8IYS5 282 aa16.26■□□□□ 0.19
NUP50-217ENST00000491860 PRDM2Q13029 1718 aa16.19■□□□□ 0.18
NUP50-217ENST00000491860 URB2Q14146 1524 aaKnown RBP16.19■□□□□ 0.18
NUP50-217ENST00000491860 CCDC88BA6NC98 1476 aa16.11■□□□□ 0.17
NUP50-217ENST00000491860 RIMBP3CA6NJZ7 1639 aa16.11■□□□□ 0.17
NUP50-217ENST00000491860 RIMBP3BA6NNM3 1639 aa16.11■□□□□ 0.17
NUP50-217ENST00000491860 RIMBP3Q9UFD9 1639 aa16.11■□□□□ 0.17
NUP50-217ENST00000491860 IFT140Q96RY7 1462 aa16.04■□□□□ 0.16
NUP50-217ENST00000491860 ABCC8Q09428 1581 aa16.03■□□□□ 0.16
NUP50-217ENST00000491860 ARHGEF11O15085 1522 aa16.03■□□□□ 0.16
NUP50-217ENST00000491860 ZNF608Q9ULD9 1512 aaPredicted RBP16■□□□□ 0.15
NUP50-217ENST00000491860 TOPBP1Q92547 1522 aa15.96■□□□□ 0.15
NUP50-217ENST00000491860 EIF4G3O43432 1585 aaKnown RBP15.94■□□□□ 0.14
NUP50-217ENST00000491860 DNMBPQ6XZF7 1577 aa15.92■□□□□ 0.14
NUP50-217ENST00000491860 TARBP1Q13395 1621 aaKnown RBP15.87■□□□□ 0.13
NUP50-217ENST00000491860 CHD1O14646 1710 aa15.87■□□□□ 0.13
NUP50-217ENST00000491860 ARAP1Q96P48 1450 aa15.84■□□□□ 0.13
NUP50-217ENST00000491860 CYB5RLQ6IPT4 315 aa15.84■□□□□ 0.13
NUP50-217ENST00000491860 AQRO60306 1485 aaKnown RBP eCLIP15.8■□□□□ 0.12
NUP50-217ENST00000491860 POLA1P09884 1462 aaPredicted RBP15.78■□□□□ 0.12
NUP50-217ENST00000491860 WDR97A6NE52 1622 aa15.77■□□□□ 0.12
NUP50-217ENST00000491860 TRHP20396 242 aaPredicted RBP15.74■□□□□ 0.11
NUP50-217ENST00000491860 SOGA1O94964 1423 aa15.73■□□□□ 0.11
NUP50-217ENST00000491860 CLASP1Q7Z460 1538 aa15.72■□□□□ 0.11
NUP50-217ENST00000491860 FBLN2P98095 1184 aa15.7■□□□□ 0.1
NUP50-217ENST00000491860 FGD5Q6ZNL6 1462 aa15.69■□□□□ 0.1
NUP50-217ENST00000491860 SUPT5HO00267 1087 aaKnown RBP15.68■□□□□ 0.1
NUP50-217ENST00000491860 RAD54L2Q9Y4B4 1467 aa15.67■□□□□ 0.1
NUP50-217ENST00000491860 CUX1P39880 1505 aa15.67■□□□□ 0.1
NUP50-217ENST00000491860 SYNJ1O43426 1573 aa15.66■□□□□ 0.1
NUP50-217ENST00000491860 SNAPC4Q5SXM2 1469 aa15.65■□□□□ 0.1
NUP50-217ENST00000491860 MAGI1Q96QZ7 1491 aaPredicted RBP15.65■□□□□ 0.1
NUP50-217ENST00000491860 TDRD9Q8NDG6 1382 aaKnown RBP15.65■□□□□ 0.1
NUP50-217ENST00000491860 GRIN2BQ13224 1484 aa15.61■□□□□ 0.09
NUP50-217ENST00000491860 SYNJ2O15056 1496 aa15.6■□□□□ 0.09
NUP50-217ENST00000491860 CHMP7Q8WUX9 453 aaPredicted RBP15.58■□□□□ 0.08
NUP50-217ENST00000491860 ABCA10Q8WWZ4 1543 aa15.57■□□□□ 0.08
NUP50-217ENST00000491860 GAPVD1Q14C86 1478 aa15.54■□□□□ 0.08
NUP50-217ENST00000491860 PBRM1Q86U86 1689 aa15.54■□□□□ 0.08
NUP50-217ENST00000491860 WRNQ14191 1432 aaPredicted RBP eCLIP15.53■□□□□ 0.08
NUP50-217ENST00000491860 AEBP2Q6ZN18 517 aaPredicted RBP15.52■□□□□ 0.08
NUP50-217ENST00000491860 ABCA5Q8WWZ7 1642 aa15.51■□□□□ 0.07
NUP50-217ENST00000491860 TOP2BQ02880 1626 aa15.5■□□□□ 0.07
NUP50-217ENST00000491860 BIVM-ERCC5R4GMW8 1640 aa15.5■□□□□ 0.07
NUP50-217ENST00000491860 GRIN2AQ12879 1464 aa15.4■□□□□ 0.06
NUP50-217ENST00000491860 ERICH3Q5RHP9 1530 aa15.4■□□□□ 0.06
NUP50-217ENST00000491860 ADAMTS12P58397 1594 aa15.38■□□□□ 0.05
NUP50-217ENST00000491860 ERCC6L2Q5T890 1561 aa15.38■□□□□ 0.05
NUP50-217ENST00000491860 NUP160Q12769 1436 aa15.38■□□□□ 0.05
NUP50-217ENST00000491860 SHROOM2Q13796 1616 aa15.38■□□□□ 0.05
NUP50-217ENST00000491860 CEP170Q5SW79 1584 aa15.37■□□□□ 0.05
NUP50-217ENST00000491860 FHAD1B1AJZ9 1412 aa15.37■□□□□ 0.05
NUP50-217ENST00000491860 KIF13AQ9H1H9 1805 aa15.31■□□□□ 0.04
NUP50-217ENST00000491860 KIF27Q86VH2 1401 aa15.23■□□□□ 0.03
NUP50-217ENST00000491860 CUL7Q14999 1698 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms