RNA–Protein interactions for RNA: ENST00000491825.1

CDC42SE1-205, Transcript of CDC42 small effector 1, humanhuman

TSL 2

Gene CDC42SE1, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-205ENST00000491825 NISCHQ9Y2I1 1504 aa37.22■■■■□ 3.55
CDC42SE1-205ENST00000491825 CCDC180Q9P1Z9 1646 aa33.33■■■□□ 2.93
CDC42SE1-205ENST00000491825 ABCC9O60706 1549 aa33.24■■■□□ 2.91
CDC42SE1-205ENST00000491825 RB1CC1Q8TDY2 1594 aa31.68■■■□□ 2.66
CDC42SE1-205ENST00000491825 NACADO15069 1562 aa31.5■■■□□ 2.63
CDC42SE1-205ENST00000491825 DCAF8L2P0C7V8 631 aa31.21■■■□□ 2.59
CDC42SE1-205ENST00000491825 MYO15BQ96JP2 1530 aa31.16■■■□□ 2.58
CDC42SE1-205ENST00000491825 DNAJC5BQ9UF47 199 aa31.15■■■□□ 2.58
CDC42SE1-205ENST00000491825 PABPN1Q86U42 306 aaKnown RBP eCLIP30.94■■■□□ 2.54
CDC42SE1-205ENST00000491825 UNC13AQ9UPW8 1703 aa30.91■■■□□ 2.54
CDC42SE1-205ENST00000491825 ZCCHC6Q5VYS8 1495 aaKnown RBP30.9■■■□□ 2.54
CDC42SE1-205ENST00000491825 BICRAQ9NZM4 1560 aa30.81■■■□□ 2.52
CDC42SE1-205ENST00000491825 DCAF1Q9Y4B6 1507 aa30.78■■■□□ 2.52
CDC42SE1-205ENST00000491825 SHROOM4Q9ULL8 1493 aa30.43■■■□□ 2.46
CDC42SE1-205ENST00000491825 SCRIBQ14160 1630 aa30.36■■■□□ 2.45
CDC42SE1-205ENST00000491825 CC2D2AQ9P2K1 1620 aa30.04■■■□□ 2.4
CDC42SE1-205ENST00000491825 EIF4G1Q04637 1599 aaKnown RBP30.03■■■□□ 2.4
CDC42SE1-205ENST00000491825 CECR2Q9BXF3 1484 aa29.95■■■□□ 2.39
CDC42SE1-205ENST00000491825 NCAPD3P42695 1498 aa29.12■■■□□ 2.25
CDC42SE1-205ENST00000491825 ATAD2BQ9ULI0 1458 aa29.04■■■□□ 2.24
CDC42SE1-205ENST00000491825 SMARCA4P51532 1647 aa29■■■□□ 2.23
CDC42SE1-205ENST00000491825 SMARCA2P51531 1590 aa28.92■■■□□ 2.22
CDC42SE1-205ENST00000491825 HMGXB3Q12766 1538 aa28.91■■■□□ 2.22
CDC42SE1-205ENST00000491825 BAZ1AQ9NRL2 1556 aaPredicted RBP28.86■■■□□ 2.21
CDC42SE1-205ENST00000491825 PEG3Q9GZU2 1588 aa28.76■■■□□ 2.19
CDC42SE1-205ENST00000491825 BAZ1BQ9UIG0 1483 aaKnown RBP28.72■■■□□ 2.19
CDC42SE1-205ENST00000491825 MROH2BQ7Z745 1585 aa28.68■■■□□ 2.18
CDC42SE1-205ENST00000491825 ERCC6Q03468 1493 aa28.66■■■□□ 2.18
CDC42SE1-205ENST00000491825 CUX2O14529 1486 aa28.65■■■□□ 2.18
CDC42SE1-205ENST00000491825 NESP48681 1621 aa28.6■■■□□ 2.17
CDC42SE1-205ENST00000491825 DNAJC5Q9H3Z4 198 aa28.51■■■□□ 2.15
CDC42SE1-205ENST00000491825 LAMC3Q9Y6N6 1575 aa28.41■■■□□ 2.14
CDC42SE1-205ENST00000491825 THOC2Q8NI27 1593 aaKnown RBP28.32■■■□□ 2.12
CDC42SE1-205ENST00000491825 WIZO95785 1651 aa28.29■■■□□ 2.12
CDC42SE1-205ENST00000491825 PDS5BQ9NTI5 1447 aa28.23■■■□□ 2.11
CDC42SE1-205ENST00000491825 CADPSQ9ULU8 1353 aa28.22■■■□□ 2.11
CDC42SE1-205ENST00000491825 KIF21AQ7Z4S6 1674 aa28.18■■■□□ 2.1
CDC42SE1-205ENST00000491825 RSF1Q96T23 1441 aaPredicted RBP28.13■■■□□ 2.09
CDC42SE1-205ENST00000491825 MRC2Q9UBG0 1479 aa28.01■■■□□ 2.07
CDC42SE1-205ENST00000491825 TOP2AP11388 1531 aaKnown RBP27.98■■■□□ 2.07
CDC42SE1-205ENST00000491825 WDR62O43379 1518 aa27.96■■■□□ 2.07
CDC42SE1-205ENST00000491825 CFTRP13569 1480 aa27.94■■■□□ 2.06
CDC42SE1-205ENST00000491825 CEP164Q9UPV0 1460 aa27.89■■■□□ 2.06
CDC42SE1-205ENST00000491825 FANCD2Q9BXW9 1451 aa27.89■■■□□ 2.05
CDC42SE1-205ENST00000491825 URB2Q14146 1524 aaKnown RBP27.67■■■□□ 2.02
CDC42SE1-205ENST00000491825 CCDC88BA6NC98 1476 aa27.65■■■□□ 2.02
CDC42SE1-205ENST00000491825 PRDM2Q13029 1718 aa27.54■■■□□ 2
CDC42SE1-205ENST00000491825 TOPBP1Q92547 1522 aa27.37■■□□□ 1.97
CDC42SE1-205ENST00000491825 IFT140Q96RY7 1462 aa27.35■■□□□ 1.97
CDC42SE1-205ENST00000491825 ZNF608Q9ULD9 1512 aaPredicted RBP27.31■■□□□ 1.96
CDC42SE1-205ENST00000491825 OSCARQ8IYS5 282 aa27.29■■□□□ 1.96
CDC42SE1-205ENST00000491825 ABCC8Q09428 1581 aa27.28■■□□□ 1.96
CDC42SE1-205ENST00000491825 DNMBPQ6XZF7 1577 aa27.27■■□□□ 1.96
CDC42SE1-205ENST00000491825 TRIM41Q8WV44 630 aa27.22■■□□□ 1.95
CDC42SE1-205ENST00000491825 EIF4G3O43432 1585 aaKnown RBP27.14■■□□□ 1.94
CDC42SE1-205ENST00000491825 TARBP1Q13395 1621 aaKnown RBP27.13■■□□□ 1.93
CDC42SE1-205ENST00000491825 POLA1P09884 1462 aaPredicted RBP27.12■■□□□ 1.93
CDC42SE1-205ENST00000491825 AQRO60306 1485 aaKnown RBP eCLIP27.05■■□□□ 1.921e-6■■□□□ 13.1
CDC42SE1-205ENST00000491825 RAD54L2Q9Y4B4 1467 aa26.99■■□□□ 1.91
CDC42SE1-205ENST00000491825 RIMBP3CA6NJZ7 1639 aa26.95■■□□□ 1.91
CDC42SE1-205ENST00000491825 RIMBP3BA6NNM3 1639 aa26.95■■□□□ 1.91
CDC42SE1-205ENST00000491825 RIMBP3Q9UFD9 1639 aa26.95■■□□□ 1.91
CDC42SE1-205ENST00000491825 SOGA1O94964 1423 aa26.94■■□□□ 1.9
CDC42SE1-205ENST00000491825 CUX1P39880 1505 aa26.94■■□□□ 1.9
CDC42SE1-205ENST00000491825 FGD5Q6ZNL6 1462 aa26.93■■□□□ 1.9
CDC42SE1-205ENST00000491825 ARHGEF11O15085 1522 aa26.91■■□□□ 1.9
CDC42SE1-205ENST00000491825 TDRD9Q8NDG6 1382 aaKnown RBP26.88■■□□□ 1.89
CDC42SE1-205ENST00000491825 CHD1O14646 1710 aa26.86■■□□□ 1.89
CDC42SE1-205ENST00000491825 WDR97A6NE52 1622 aa26.85■■□□□ 1.89
CDC42SE1-205ENST00000491825 SUPT5HO00267 1087 aaKnown RBP26.82■■□□□ 1.88
CDC42SE1-205ENST00000491825 SNAPC4Q5SXM2 1469 aa26.79■■□□□ 1.88
CDC42SE1-205ENST00000491825 FBLN2P98095 1184 aa26.76■■□□□ 1.87
CDC42SE1-205ENST00000491825 MAGI1Q96QZ7 1491 aaPredicted RBP26.73■■□□□ 1.87
CDC42SE1-205ENST00000491825 GRIN2BQ13224 1484 aa26.72■■□□□ 1.87
CDC42SE1-205ENST00000491825 ARAP1Q96P48 1450 aa26.68■■□□□ 1.86
CDC42SE1-205ENST00000491825 CLASP1Q7Z460 1538 aa26.66■■□□□ 1.86
CDC42SE1-205ENST00000491825 ABCA10Q8WWZ4 1543 aa26.66■■□□□ 1.86
CDC42SE1-205ENST00000491825 SYNJ2O15056 1496 aa26.64■■□□□ 1.86
CDC42SE1-205ENST00000491825 GAPVD1Q14C86 1478 aa26.63■■□□□ 1.85
CDC42SE1-205ENST00000491825 CYB5RLQ6IPT4 315 aa26.63■■□□□ 1.85
CDC42SE1-205ENST00000491825 CHMP7Q8WUX9 453 aaPredicted RBP26.61■■□□□ 1.85
CDC42SE1-205ENST00000491825 ABCA5Q8WWZ7 1642 aa26.61■■□□□ 1.85
CDC42SE1-205ENST00000491825 SYNJ1O43426 1573 aa26.58■■□□□ 1.85
CDC42SE1-205ENST00000491825 PBRM1Q86U86 1689 aa26.57■■□□□ 1.84
CDC42SE1-205ENST00000491825 WRNQ14191 1432 aaPredicted RBP eCLIP26.53■■□□□ 1.84
CDC42SE1-205ENST00000491825 TOP2BQ02880 1626 aa26.51■■□□□ 1.83
CDC42SE1-205ENST00000491825 BIVM-ERCC5R4GMW8 1640 aa26.5■■□□□ 1.83
CDC42SE1-205ENST00000491825 ADAMTS12P58397 1594 aa26.4■■□□□ 1.82
CDC42SE1-205ENST00000491825 GRIN2AQ12879 1464 aa26.39■■□□□ 1.82
CDC42SE1-205ENST00000491825 NUP160Q12769 1436 aa26.33■■□□□ 1.81
CDC42SE1-205ENST00000491825 FHAD1B1AJZ9 1412 aa26.31■■□□□ 1.8
CDC42SE1-205ENST00000491825 ERICH3Q5RHP9 1530 aa26.3■■□□□ 1.8
CDC42SE1-205ENST00000491825 CEP170Q5SW79 1584 aa26.29■■□□□ 1.8
CDC42SE1-205ENST00000491825 TRHP20396 242 aaPredicted RBP26.26■■□□□ 1.79
CDC42SE1-205ENST00000491825 ERCC6L2Q5T890 1561 aa26.23■■□□□ 1.79
CDC42SE1-205ENST00000491825 SHROOM2Q13796 1616 aa26.18■■□□□ 1.78
CDC42SE1-205ENST00000491825 RUSC2Q8N2Y8 1516 aa26.03■■□□□ 1.76
CDC42SE1-205ENST00000491825 PRG4Q92954 1404 aaPredicted RBP26.01■■□□□ 1.75
CDC42SE1-205ENST00000491825 IGF1RP08069 1367 aa25.99■■□□□ 1.75
CDC42SE1-205ENST00000491825 KIF27Q86VH2 1401 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms