RNA–Protein interactions for RNA: ENST00000491802.1

CPNE9-204, Transcript of copine family member 9, humanhuman

TSL 4

Gene CPNE9, Length 584 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE9-204ENST00000491802 NISCHQ9Y2I1 1504 aa56.61■■■■■ 6.65
CPNE9-204ENST00000491802 CCDC180Q9P1Z9 1646 aa50.49■■■■■ 5.67
CPNE9-204ENST00000491802 ABCC9O60706 1549 aa49.25■■■■■ 5.48
CPNE9-204ENST00000491802 RB1CC1Q8TDY2 1594 aa47.49■■■■■ 5.19
CPNE9-204ENST00000491802 NACADO15069 1562 aa47.45■■■■■ 5.19
CPNE9-204ENST00000491802 MYO15BQ96JP2 1530 aa47.24■■■■■ 5.15
CPNE9-204ENST00000491802 ZCCHC6Q5VYS8 1495 aaKnown RBP47.15■■■■■ 5.14
CPNE9-204ENST00000491802 DCAF8L2P0C7V8 631 aa47.05■■■■■ 5.12
CPNE9-204ENST00000491802 DCAF1Q9Y4B6 1507 aa46.96■■■■■ 5.11
CPNE9-204ENST00000491802 UNC13AQ9UPW8 1703 aa46.44■■■■■ 5.02
CPNE9-204ENST00000491802 BICRAQ9NZM4 1560 aa46.05■■■■■ 4.96
CPNE9-204ENST00000491802 PABPN1Q86U42 306 aaKnown RBP eCLIP45.92■■■■■ 4.94
CPNE9-204ENST00000491802 SCRIBQ14160 1630 aa45.85■■■■■ 4.93
CPNE9-204ENST00000491802 SHROOM4Q9ULL8 1493 aa45.71■■■■■ 4.91
CPNE9-204ENST00000491802 DNAJC5BQ9UF47 199 aa45.28■■■■■ 4.84
CPNE9-204ENST00000491802 EIF4G1Q04637 1599 aaKnown RBP44.83■■■■■ 4.77
CPNE9-204ENST00000491802 CC2D2AQ9P2K1 1620 aa44.65■■■■■ 4.74
CPNE9-204ENST00000491802 CECR2Q9BXF3 1484 aa44.33■■■■■ 4.69
CPNE9-204ENST00000491802 SMARCA4P51532 1647 aa43.95■■■■■ 4.63
CPNE9-204ENST00000491802 BAZ1AQ9NRL2 1556 aaPredicted RBP43.91■■■■■ 4.62
CPNE9-204ENST00000491802 NCAPD3P42695 1498 aa43.76■■■■■ 4.6
CPNE9-204ENST00000491802 ATAD2BQ9ULI0 1458 aa43.72■■■■■ 4.59
CPNE9-204ENST00000491802 SMARCA2P51531 1590 aa43.71■■■■■ 4.59
CPNE9-204ENST00000491802 PEG3Q9GZU2 1588 aa43.63■■■■■ 4.58
CPNE9-204ENST00000491802 HMGXB3Q12766 1538 aa43.57■■■■■ 4.56
CPNE9-204ENST00000491802 MROH2BQ7Z745 1585 aa43.56■■■■■ 4.56
CPNE9-204ENST00000491802 BAZ1BQ9UIG0 1483 aaKnown RBP43.32■■■■■ 4.53
CPNE9-204ENST00000491802 WIZO95785 1651 aa43.09■■■■■ 4.49
CPNE9-204ENST00000491802 RSF1Q96T23 1441 aaPredicted RBP43.04■■■■■ 4.48
CPNE9-204ENST00000491802 TOP2AP11388 1531 aaKnown RBP42.69■■■■■ 4.42
CPNE9-204ENST00000491802 LAMC3Q9Y6N6 1575 aa42.64■■■■■ 4.42
CPNE9-204ENST00000491802 NESP48681 1621 aa42.6■■■■■ 4.41
CPNE9-204ENST00000491802 ERCC6Q03468 1493 aa42.48■■■■■ 4.39
CPNE9-204ENST00000491802 CADPSQ9ULU8 1353 aa42.42■■■■■ 4.38
CPNE9-204ENST00000491802 PDS5BQ9NTI5 1447 aa42.29■■■■■ 4.36
CPNE9-204ENST00000491802 CUX2O14529 1486 aa42.21■■■■■ 4.35
CPNE9-204ENST00000491802 KIF21AQ7Z4S6 1674 aa42.19■■■■■ 4.34
CPNE9-204ENST00000491802 CFTRP13569 1480 aa42.18■■■■■ 4.34
CPNE9-204ENST00000491802 CCDC88BA6NC98 1476 aa42.12■■■■■ 4.33
CPNE9-204ENST00000491802 THOC2Q8NI27 1593 aaKnown RBP42.12■■■■■ 4.33
CPNE9-204ENST00000491802 PRDM2Q13029 1718 aa41.96■■■■■ 4.31
CPNE9-204ENST00000491802 SUPT5HO00267 1087 aaKnown RBP41.95■■■■■ 4.31
CPNE9-204ENST00000491802 FANCD2Q9BXW9 1451 aa41.91■■■■■ 4.3
CPNE9-204ENST00000491802 CEP164Q9UPV0 1460 aa41.88■■■■■ 4.29
CPNE9-204ENST00000491802 MRC2Q9UBG0 1479 aa41.86■■■■■ 4.29
CPNE9-204ENST00000491802 WDR62O43379 1518 aa41.79■■■■■ 4.28
CPNE9-204ENST00000491802 URB2Q14146 1524 aaKnown RBP41.51■■■■■ 4.24
CPNE9-204ENST00000491802 ABCC8Q09428 1581 aa41.32■■■■■ 4.2
CPNE9-204ENST00000491802 TOPBP1Q92547 1522 aa41.25■■■■■ 4.19
CPNE9-204ENST00000491802 DNMBPQ6XZF7 1577 aa41.23■■■■■ 4.19
CPNE9-204ENST00000491802 IFT140Q96RY7 1462 aa41.04■■■■■ 4.16
CPNE9-204ENST00000491802 DNAJC5Q9H3Z4 198 aa40.95■■■■■ 4.15
CPNE9-204ENST00000491802 POLA1P09884 1462 aaPredicted RBP40.9■■■■■ 4.14
CPNE9-204ENST00000491802 CUX1P39880 1505 aa40.88■■■■■ 4.14
CPNE9-204ENST00000491802 TARBP1Q13395 1621 aaKnown RBP40.85■■■■■ 4.13
CPNE9-204ENST00000491802 ZNF608Q9ULD9 1512 aaPredicted RBP40.78■■■■■ 4.12
CPNE9-204ENST00000491802 FGD5Q6ZNL6 1462 aa40.75■■■■■ 4.11
CPNE9-204ENST00000491802 EIF4G3O43432 1585 aaKnown RBP40.69■■■■■ 4.11
CPNE9-204ENST00000491802 SOGA1O94964 1423 aa40.67■■■■■ 4.1
CPNE9-204ENST00000491802 WDR97A6NE52 1622 aa40.64■■■■■ 4.1
CPNE9-204ENST00000491802 RAD54L2Q9Y4B4 1467 aa40.64■■■■■ 4.1
CPNE9-204ENST00000491802 BIVM-ERCC5R4GMW8 1640 aa40.59■■■■■ 4.09
CPNE9-204ENST00000491802 WRNQ14191 1432 aaPredicted RBP eCLIP40.58■■■■■ 4.09
CPNE9-204ENST00000491802 TOP2BQ02880 1626 aa40.57■■■■■ 4.09
CPNE9-204ENST00000491802 AQRO60306 1485 aaKnown RBP eCLIP40.52■■■■■ 4.08
CPNE9-204ENST00000491802 SYNJ1O43426 1573 aa40.49■■■■■ 4.07
CPNE9-204ENST00000491802 ABCA10Q8WWZ4 1543 aa40.42■■■■■ 4.06
CPNE9-204ENST00000491802 TDRD9Q8NDG6 1382 aaKnown RBP40.4■■■■■ 4.06
CPNE9-204ENST00000491802 OSCARQ8IYS5 282 aa40.32■■■■■ 4.05
CPNE9-204ENST00000491802 ABCA5Q8WWZ7 1642 aa40.29■■■■■ 4.04
CPNE9-204ENST00000491802 GRIN2BQ13224 1484 aa40.26■■■■■ 4.04
CPNE9-204ENST00000491802 GAPVD1Q14C86 1478 aa40.23■■■■■ 4.03
CPNE9-204ENST00000491802 PBRM1Q86U86 1689 aa40.21■■■■■ 4.03
CPNE9-204ENST00000491802 MAGI1Q96QZ7 1491 aaPredicted RBP40.21■■■■■ 4.03
CPNE9-204ENST00000491802 CHD1O14646 1710 aa40.2■■■■■ 4.03
CPNE9-204ENST00000491802 SNAPC4Q5SXM2 1469 aa40.18■■■■■ 4.02
CPNE9-204ENST00000491802 SYNJ2O15056 1496 aa40.03■■■■■ 4
CPNE9-204ENST00000491802 ERICH3Q5RHP9 1530 aa39.96■■■■□ 3.99
CPNE9-204ENST00000491802 FBLN2P98095 1184 aa39.93■■■■□ 3.98
CPNE9-204ENST00000491802 CHMP7Q8WUX9 453 aaPredicted RBP39.9■■■■□ 3.98
CPNE9-204ENST00000491802 ADAMTS12P58397 1594 aa39.89■■■■□ 3.98
CPNE9-204ENST00000491802 CLASP1Q7Z460 1538 aa39.81■■■■□ 3.96
CPNE9-204ENST00000491802 FHAD1B1AJZ9 1412 aa39.79■■■■□ 3.96
CPNE9-204ENST00000491802 GRIN2AQ12879 1464 aa39.75■■■■□ 3.95
CPNE9-204ENST00000491802 KIF27Q86VH2 1401 aa39.74■■■■□ 3.95
CPNE9-204ENST00000491802 RIMBP3CA6NJZ7 1639 aa39.74■■■■□ 3.95
CPNE9-204ENST00000491802 RIMBP3BA6NNM3 1639 aa39.74■■■■□ 3.95
CPNE9-204ENST00000491802 RIMBP3Q9UFD9 1639 aa39.74■■■■□ 3.95
CPNE9-204ENST00000491802 ARHGEF11O15085 1522 aa39.72■■■■□ 3.95
CPNE9-204ENST00000491802 NUP160Q12769 1436 aa39.61■■■■□ 3.93
CPNE9-204ENST00000491802 TRIM41Q8WV44 630 aa39.6■■■■□ 3.93
CPNE9-204ENST00000491802 IGF1RP08069 1367 aa39.59■■■■□ 3.93
CPNE9-204ENST00000491802 CUL7Q14999 1698 aa39.58■■■■□ 3.93
CPNE9-204ENST00000491802 CEP170Q5SW79 1584 aa39.55■■■■□ 3.92
CPNE9-204ENST00000491802 ARAP1Q96P48 1450 aa39.38■■■■□ 3.9
CPNE9-204ENST00000491802 SHROOM2Q13796 1616 aa39.38■■■■□ 3.89
CPNE9-204ENST00000491802 RUSC2Q8N2Y8 1516 aa39.36■■■■□ 3.89
CPNE9-204ENST00000491802 CARMIL1Q5VZK9 1371 aa39.33■■■■□ 3.89
CPNE9-204ENST00000491802 CYB5RLQ6IPT4 315 aa39.22■■■■□ 3.87
CPNE9-204ENST00000491802 KIAA0586Q9BVV6 1533 aa39.19■■■■□ 3.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms