RNA–Protein interactions for RNA: ENST00000491607.5

SMIM4-205, Transcript of small integral membrane protein 4, humanhuman

TSL 3

Gene SMIM4, Length 314 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM4-205ENST00000491607 NISCHQ9Y2I1 1504 aa45.69■■■■■ 4.9
SMIM4-205ENST00000491607 CCDC180Q9P1Z9 1646 aa40.89■■■■■ 4.14
SMIM4-205ENST00000491607 ABCC9O60706 1549 aa40.77■■■■■ 4.12
SMIM4-205ENST00000491607 RB1CC1Q8TDY2 1594 aa38.87■■■■□ 3.81
SMIM4-205ENST00000491607 NACADO15069 1562 aa38.63■■■■□ 3.77
SMIM4-205ENST00000491607 DCAF8L2P0C7V8 631 aa38.6■■■■□ 3.77
SMIM4-205ENST00000491607 MYO15BQ96JP2 1530 aa38.12■■■■□ 3.69
SMIM4-205ENST00000491607 DNAJC5BQ9UF47 199 aa38.03■■■■□ 3.68
SMIM4-205ENST00000491607 PABPN1Q86U42 306 aaKnown RBP eCLIP38.01■■■■□ 3.68
SMIM4-205ENST00000491607 UNC13AQ9UPW8 1703 aa37.93■■■■□ 3.66
SMIM4-205ENST00000491607 ZCCHC6Q5VYS8 1495 aaKnown RBP37.9■■■■□ 3.66
SMIM4-205ENST00000491607 DCAF1Q9Y4B6 1507 aa37.71■■■■□ 3.63
SMIM4-205ENST00000491607 BICRAQ9NZM4 1560 aa37.69■■■■□ 3.62
SMIM4-205ENST00000491607 SCRIBQ14160 1630 aa37.35■■■■□ 3.57
SMIM4-205ENST00000491607 SHROOM4Q9ULL8 1493 aa37.2■■■■□ 3.55
SMIM4-205ENST00000491607 CC2D2AQ9P2K1 1620 aa36.81■■■■□ 3.48
SMIM4-205ENST00000491607 EIF4G1Q04637 1599 aaKnown RBP36.78■■■■□ 3.48
SMIM4-205ENST00000491607 CECR2Q9BXF3 1484 aa36.7■■■■□ 3.47
SMIM4-205ENST00000491607 NCAPD3P42695 1498 aa35.66■■■■□ 3.3
SMIM4-205ENST00000491607 SMARCA4P51532 1647 aa35.61■■■■□ 3.29
SMIM4-205ENST00000491607 ATAD2BQ9ULI0 1458 aa35.59■■■■□ 3.29
SMIM4-205ENST00000491607 SMARCA2P51531 1590 aa35.51■■■■□ 3.27
SMIM4-205ENST00000491607 BAZ1AQ9NRL2 1556 aaPredicted RBP35.47■■■■□ 3.27
SMIM4-205ENST00000491607 HMGXB3Q12766 1538 aa35.42■■■■□ 3.26
SMIM4-205ENST00000491607 BAZ1BQ9UIG0 1483 aaKnown RBP35.29■■■■□ 3.24
SMIM4-205ENST00000491607 PEG3Q9GZU2 1588 aa35.23■■■■□ 3.23
SMIM4-205ENST00000491607 ERCC6Q03468 1493 aa35.22■■■■□ 3.23
SMIM4-205ENST00000491607 MROH2BQ7Z745 1585 aa35.22■■■■□ 3.23
SMIM4-205ENST00000491607 NESP48681 1621 aa35.07■■■■□ 3.21
SMIM4-205ENST00000491607 CUX2O14529 1486 aa35.03■■■■□ 3.2
SMIM4-205ENST00000491607 LAMC3Q9Y6N6 1575 aa34.83■■■■□ 3.17
SMIM4-205ENST00000491607 WIZO95785 1651 aa34.81■■■■□ 3.16
SMIM4-205ENST00000491607 DNAJC5Q9H3Z4 198 aa34.78■■■■□ 3.16
SMIM4-205ENST00000491607 PDS5BQ9NTI5 1447 aa34.65■■■■□ 3.14
SMIM4-205ENST00000491607 THOC2Q8NI27 1593 aaKnown RBP34.65■■■■□ 3.14
SMIM4-205ENST00000491607 KIF21AQ7Z4S6 1674 aa34.61■■■■□ 3.13
SMIM4-205ENST00000491607 CADPSQ9ULU8 1353 aa34.6■■■■□ 3.13
SMIM4-205ENST00000491607 RSF1Q96T23 1441 aaPredicted RBP34.56■■■■□ 3.12
SMIM4-205ENST00000491607 TOP2AP11388 1531 aaKnown RBP34.39■■■■□ 3.1
SMIM4-205ENST00000491607 MRC2Q9UBG0 1479 aa34.34■■■■□ 3.09
SMIM4-205ENST00000491607 CEP164Q9UPV0 1460 aa34.26■■■■□ 3.07
SMIM4-205ENST00000491607 CFTRP13569 1480 aa34.24■■■■□ 3.07
SMIM4-205ENST00000491607 FANCD2Q9BXW9 1451 aa34.23■■■■□ 3.07
SMIM4-205ENST00000491607 WDR62O43379 1518 aa34.23■■■■□ 3.07
SMIM4-205ENST00000491607 CCDC88BA6NC98 1476 aa34■■■■□ 3.03
SMIM4-205ENST00000491607 URB2Q14146 1524 aaKnown RBP33.92■■■■□ 3.02
SMIM4-205ENST00000491607 PRDM2Q13029 1718 aa33.88■■■■□ 3.01
SMIM4-205ENST00000491607 TOPBP1Q92547 1522 aa33.58■■■□□ 2.97
SMIM4-205ENST00000491607 IFT140Q96RY7 1462 aa33.55■■■□□ 2.96
SMIM4-205ENST00000491607 ABCC8Q09428 1581 aa33.52■■■□□ 2.96
SMIM4-205ENST00000491607 OSCARQ8IYS5 282 aa33.49■■■□□ 2.95
SMIM4-205ENST00000491607 DNMBPQ6XZF7 1577 aa33.48■■■□□ 2.95
SMIM4-205ENST00000491607 ZNF608Q9ULD9 1512 aaPredicted RBP33.48■■■□□ 2.95
SMIM4-205ENST00000491607 TRIM41Q8WV44 630 aa33.43■■■□□ 2.94
SMIM4-205ENST00000491607 EIF4G3O43432 1585 aaKnown RBP33.31■■■□□ 2.92
SMIM4-205ENST00000491607 POLA1P09884 1462 aaPredicted RBP33.26■■■□□ 2.92
SMIM4-205ENST00000491607 SUPT5HO00267 1087 aaKnown RBP33.26■■■□□ 2.91
SMIM4-205ENST00000491607 TARBP1Q13395 1621 aaKnown RBP33.25■■■□□ 2.91
SMIM4-205ENST00000491607 AQRO60306 1485 aaKnown RBP eCLIP33.21■■■□□ 2.91
SMIM4-205ENST00000491607 RAD54L2Q9Y4B4 1467 aa33.15■■■□□ 2.9
SMIM4-205ENST00000491607 SOGA1O94964 1423 aa33.13■■■□□ 2.89
SMIM4-205ENST00000491607 FGD5Q6ZNL6 1462 aa33.1■■■□□ 2.89
SMIM4-205ENST00000491607 CUX1P39880 1505 aa33.07■■■□□ 2.89
SMIM4-205ENST00000491607 TDRD9Q8NDG6 1382 aaKnown RBP33.05■■■□□ 2.88
SMIM4-205ENST00000491607 FBLN2P98095 1184 aa33.02■■■□□ 2.88
SMIM4-205ENST00000491607 RIMBP3CA6NJZ7 1639 aa33.02■■■□□ 2.88
SMIM4-205ENST00000491607 RIMBP3BA6NNM3 1639 aa33.02■■■□□ 2.88
SMIM4-205ENST00000491607 RIMBP3Q9UFD9 1639 aa33.02■■■□□ 2.88
SMIM4-205ENST00000491607 CHD1O14646 1710 aa33■■■□□ 2.87
SMIM4-205ENST00000491607 ARHGEF11O15085 1522 aa32.93■■■□□ 2.86
SMIM4-205ENST00000491607 WDR97A6NE52 1622 aa32.92■■■□□ 2.86
SMIM4-205ENST00000491607 SNAPC4Q5SXM2 1469 aa32.88■■■□□ 2.85
SMIM4-205ENST00000491607 GRIN2BQ13224 1484 aa32.81■■■□□ 2.84
SMIM4-205ENST00000491607 MAGI1Q96QZ7 1491 aaPredicted RBP32.79■■■□□ 2.84
SMIM4-205ENST00000491607 CHMP7Q8WUX9 453 aaPredicted RBP32.78■■■□□ 2.84
SMIM4-205ENST00000491607 GAPVD1Q14C86 1478 aa32.73■■■□□ 2.83
SMIM4-205ENST00000491607 CYB5RLQ6IPT4 315 aa32.72■■■□□ 2.83
SMIM4-205ENST00000491607 ABCA10Q8WWZ4 1543 aa32.7■■■□□ 2.83
SMIM4-205ENST00000491607 PBRM1Q86U86 1689 aa32.69■■■□□ 2.82
SMIM4-205ENST00000491607 SYNJ2O15056 1496 aa32.68■■■□□ 2.82
SMIM4-205ENST00000491607 SYNJ1O43426 1573 aa32.66■■■□□ 2.82
SMIM4-205ENST00000491607 WRNQ14191 1432 aaPredicted RBP eCLIP32.64■■■□□ 2.82
SMIM4-205ENST00000491607 ABCA5Q8WWZ7 1642 aa32.64■■■□□ 2.82
SMIM4-205ENST00000491607 CLASP1Q7Z460 1538 aa32.62■■■□□ 2.81
SMIM4-205ENST00000491607 ARAP1Q96P48 1450 aa32.62■■■□□ 2.81
SMIM4-205ENST00000491607 TOP2BQ02880 1626 aa32.59■■■□□ 2.81
SMIM4-205ENST00000491607 BIVM-ERCC5R4GMW8 1640 aa32.59■■■□□ 2.81
SMIM4-205ENST00000491607 GRIN2AQ12879 1464 aa32.39■■■□□ 2.78
SMIM4-205ENST00000491607 ADAMTS12P58397 1594 aa32.39■■■□□ 2.78
SMIM4-205ENST00000491607 TRHP20396 242 aaPredicted RBP32.34■■■□□ 2.77
SMIM4-205ENST00000491607 FHAD1B1AJZ9 1412 aa32.32■■■□□ 2.76
SMIM4-205ENST00000491607 ERICH3Q5RHP9 1530 aa32.3■■■□□ 2.76
SMIM4-205ENST00000491607 CEP170Q5SW79 1584 aa32.26■■■□□ 2.75
SMIM4-205ENST00000491607 NUP160Q12769 1436 aa32.25■■■□□ 2.75
SMIM4-205ENST00000491607 ERCC6L2Q5T890 1561 aa32.15■■■□□ 2.74
SMIM4-205ENST00000491607 SHROOM2Q13796 1616 aa32.08■■■□□ 2.73
SMIM4-205ENST00000491607 KIF27Q86VH2 1401 aa32■■■□□ 2.71
SMIM4-205ENST00000491607 PRG4Q92954 1404 aaPredicted RBP31.97■■■□□ 2.71
SMIM4-205ENST00000491607 JPH4Q96JJ6 628 aa31.94■■■□□ 2.7
SMIM4-205ENST00000491607 RUSC2Q8N2Y8 1516 aa31.94■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms