RNA–Protein interactions for RNA: ENST00000491467.1

SRGAP3-210, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 4

Gene SRGAP3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-210ENST00000491467 NISCHQ9Y2I1 1504 aa26.79■■□□□ 1.88
SRGAP3-210ENST00000491467 ABCC9O60706 1549 aa26.21■■□□□ 1.79
SRGAP3-210ENST00000491467 DNAJC5BQ9UF47 199 aa25.87■■□□□ 1.73
SRGAP3-210ENST00000491467 DNAJC5Q9H3Z4 198 aa24.84■■□□□ 1.57
SRGAP3-210ENST00000491467 CCDC180Q9P1Z9 1646 aa24.74■■□□□ 1.55
SRGAP3-210ENST00000491467 RB1CC1Q8TDY2 1594 aa24.28■■□□□ 1.48
SRGAP3-210ENST00000491467 PABPN1Q86U42 306 aaKnown RBP eCLIP24.18■■□□□ 1.46
SRGAP3-210ENST00000491467 UNC13AQ9UPW8 1703 aa23.85■■□□□ 1.41
SRGAP3-210ENST00000491467 CECR2Q9BXF3 1484 aa23.73■■□□□ 1.39
SRGAP3-210ENST00000491467 NACADO15069 1562 aa23.69■■□□□ 1.38
SRGAP3-210ENST00000491467 CC2D2AQ9P2K1 1620 aa23.6■■□□□ 1.37
SRGAP3-210ENST00000491467 BICRAQ9NZM4 1560 aa23.58■■□□□ 1.37
SRGAP3-210ENST00000491467 DCAF8L2P0C7V8 631 aa23.46■■□□□ 1.35
SRGAP3-210ENST00000491467 TRIM41Q8WV44 630 aa23.27■■□□□ 1.32
SRGAP3-210ENST00000491467 EIF4G1Q04637 1599 aaKnown RBP23.14■■□□□ 1.3
SRGAP3-210ENST00000491467 CUX2O14529 1486 aa23.13■■□□□ 1.29
SRGAP3-210ENST00000491467 SHROOM4Q9ULL8 1493 aa23.01■■□□□ 1.27
SRGAP3-210ENST00000491467 MYO15BQ96JP2 1530 aa22.77■■□□□ 1.24
SRGAP3-210ENST00000491467 ERCC6Q03468 1493 aa22.75■■□□□ 1.23
SRGAP3-210ENST00000491467 SCRIBQ14160 1630 aa22.49■■□□□ 1.19
SRGAP3-210ENST00000491467 AEBP2Q6ZN18 517 aaPredicted RBP22.33■■□□□ 1.17
SRGAP3-210ENST00000491467 THOC2Q8NI27 1593 aaKnown RBP22.12■■□□□ 1.13
SRGAP3-210ENST00000491467 NESP48681 1621 aa22.09■■□□□ 1.13
SRGAP3-210ENST00000491467 ZCCHC6Q5VYS8 1495 aaKnown RBP22■■□□□ 1.11
SRGAP3-210ENST00000491467 DCAF1Q9Y4B6 1507 aa21.96■■□□□ 1.11
SRGAP3-210ENST00000491467 SMARCA2P51531 1590 aa21.92■■□□□ 1.1
SRGAP3-210ENST00000491467 BAZ1AQ9NRL2 1556 aaPredicted RBP21.91■■□□□ 1.1
SRGAP3-210ENST00000491467 OSCARQ8IYS5 282 aa21.9■■□□□ 1.1
SRGAP3-210ENST00000491467 NCAPD3P42695 1498 aa21.85■■□□□ 1.09
SRGAP3-210ENST00000491467 TRHP20396 242 aaPredicted RBP21.84■■□□□ 1.09
SRGAP3-210ENST00000491467 KIF21AQ7Z4S6 1674 aa21.83■■□□□ 1.09
SRGAP3-210ENST00000491467 RIMBP3CA6NJZ7 1639 aa21.81■■□□□ 1.08
SRGAP3-210ENST00000491467 RIMBP3BA6NNM3 1639 aa21.81■■□□□ 1.08
SRGAP3-210ENST00000491467 RIMBP3Q9UFD9 1639 aa21.81■■□□□ 1.08
SRGAP3-210ENST00000491467 LAMC3Q9Y6N6 1575 aa21.67■■□□□ 1.06
SRGAP3-210ENST00000491467 ATAD2BQ9ULI0 1458 aa21.6■■□□□ 1.05
SRGAP3-210ENST00000491467 PDS5BQ9NTI5 1447 aa21.58■■□□□ 1.05
SRGAP3-210ENST00000491467 ILDR1Q86SU0 546 aaPredicted RBP21.58■■□□□ 1.05
SRGAP3-210ENST00000491467 HMGXB3Q12766 1538 aa21.57■■□□□ 1.04
SRGAP3-210ENST00000491467 CYB5RLQ6IPT4 315 aa21.53■■□□□ 1.04
SRGAP3-210ENST00000491467 ARHGEF11O15085 1522 aa21.52■■□□□ 1.04
SRGAP3-210ENST00000491467 MRC2Q9UBG0 1479 aa21.48■■□□□ 1.03
SRGAP3-210ENST00000491467 WDR62O43379 1518 aa21.45■■□□□ 1.02
SRGAP3-210ENST00000491467 BAZ1BQ9UIG0 1483 aaKnown RBP21.36■■□□□ 1.01
SRGAP3-210ENST00000491467 SMARCA4P51532 1647 aa21.26■□□□□ 0.99
SRGAP3-210ENST00000491467 ARAP1Q96P48 1450 aa21.19■□□□□ 0.98
SRGAP3-210ENST00000491467 CADPSQ9ULU8 1353 aa21.15■□□□□ 0.98
SRGAP3-210ENST00000491467 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
SRGAP3-210ENST00000491467 PEG3Q9GZU2 1588 aa20.97■□□□□ 0.95
SRGAP3-210ENST00000491467 FANCD2Q9BXW9 1451 aa20.94■□□□□ 0.94
SRGAP3-210ENST00000491467 CHD1O14646 1710 aa20.92■□□□□ 0.94
SRGAP3-210ENST00000491467 RSF1Q96T23 1441 aaPredicted RBP20.87■□□□□ 0.93
SRGAP3-210ENST00000491467 URB2Q14146 1524 aaKnown RBP20.86■□□□□ 0.93
SRGAP3-210ENST00000491467 ZNF608Q9ULD9 1512 aaPredicted RBP20.86■□□□□ 0.93
SRGAP3-210ENST00000491467 FBLN2P98095 1184 aa20.77■□□□□ 0.92
SRGAP3-210ENST00000491467 SUPT5HO00267 1087 aaKnown RBP20.72■□□□□ 0.91
SRGAP3-210ENST00000491467 IFT140Q96RY7 1462 aa20.72■□□□□ 0.91
SRGAP3-210ENST00000491467 EIF4G3O43432 1585 aaKnown RBP20.7■□□□□ 0.9
SRGAP3-210ENST00000491467 MROH2BQ7Z745 1585 aa20.65■□□□□ 0.9
SRGAP3-210ENST00000491467 KDM4FA0A1W2PPD8 638 aa20.64■□□□□ 0.89
SRGAP3-210ENST00000491467 CFTRP13569 1480 aa20.57■□□□□ 0.88
SRGAP3-210ENST00000491467 AQRO60306 1485 aaKnown RBP eCLIP20.5■□□□□ 0.87
SRGAP3-210ENST00000491467 CLASP1Q7Z460 1538 aa20.49■□□□□ 0.87
SRGAP3-210ENST00000491467 KIF13AQ9H1H9 1805 aa20.48■□□□□ 0.87
SRGAP3-210ENST00000491467 FBXO41Q8TF61 875 aa20.47■□□□□ 0.87
SRGAP3-210ENST00000491467 ERCC6L2Q5T890 1561 aa20.46■□□□□ 0.87
SRGAP3-210ENST00000491467 GAPVD1Q14C86 1478 aa20.43■□□□□ 0.86
SRGAP3-210ENST00000491467 LMTK3Q96Q04 1460 aa20.43■□□□□ 0.86
SRGAP3-210ENST00000491467 PRDM2Q13029 1718 aa20.42■□□□□ 0.86
SRGAP3-210ENST00000491467 WIZO95785 1651 aa20.42■□□□□ 0.86
SRGAP3-210ENST00000491467 SYNJ1O43426 1573 aa20.41■□□□□ 0.86
SRGAP3-210ENST00000491467 TOPBP1Q92547 1522 aa20.37■□□□□ 0.85
SRGAP3-210ENST00000491467 HECW2Q9P2P5 1572 aa20.36■□□□□ 0.85
SRGAP3-210ENST00000491467 TARBP1Q13395 1621 aaKnown RBP20.32■□□□□ 0.84
SRGAP3-210ENST00000491467 CHMP7Q8WUX9 453 aaPredicted RBP20.32■□□□□ 0.84
SRGAP3-210ENST00000491467 SOCS7O14512 581 aa20.29■□□□□ 0.84
SRGAP3-210ENST00000491467 KDM6BO15054 1643 aa20.24■□□□□ 0.83
SRGAP3-210ENST00000491467 SNAPC4Q5SXM2 1469 aa20.24■□□□□ 0.83
SRGAP3-210ENST00000491467 ABCC8Q09428 1581 aa20.23■□□□□ 0.83
SRGAP3-210ENST00000491467 DNMBPQ6XZF7 1577 aa20.18■□□□□ 0.82
SRGAP3-210ENST00000491467 FAM69CQ0P6D2 419 aa20.16■□□□□ 0.82
SRGAP3-210ENST00000491467 ILDR2Q71H61 639 aa20.16■□□□□ 0.82
SRGAP3-210ENST00000491467 TDRD9Q8NDG6 1382 aaKnown RBP20.14■□□□□ 0.81
SRGAP3-210ENST00000491467 ADGRL1O94910 1474 aa20.13■□□□□ 0.81
SRGAP3-210ENST00000491467 TSPOAP1O95153 1857 aa20.11■□□□□ 0.81
SRGAP3-210ENST00000491467 SYNJ2O15056 1496 aa20.1■□□□□ 0.81
SRGAP3-210ENST00000491467 CHIC1Q5VXU3 224 aa20.09■□□□□ 0.81
SRGAP3-210ENST00000491467 MAGI1Q96QZ7 1491 aaPredicted RBP20.08■□□□□ 0.81
SRGAP3-210ENST00000491467 POLA1P09884 1462 aaPredicted RBP20.06■□□□□ 0.8
SRGAP3-210ENST00000491467 RAD54L2Q9Y4B4 1467 aa20.06■□□□□ 0.8
SRGAP3-210ENST00000491467 DISP3Q9P2K9 1392 aa20.03■□□□□ 0.8
SRGAP3-210ENST00000491467 ABCC10Q5T3U5 1492 aa20.03■□□□□ 0.8
SRGAP3-210ENST00000491467 SOGA1O94964 1423 aa19.98■□□□□ 0.79
SRGAP3-210ENST00000491467 WDR97A6NE52 1622 aa19.97■□□□□ 0.79
SRGAP3-210ENST00000491467 DIP2BQ9P265 1576 aa19.96■□□□□ 0.79
SRGAP3-210ENST00000491467 TOP2AP11388 1531 aaKnown RBP19.96■□□□□ 0.79
SRGAP3-210ENST00000491467 GRIN2BQ13224 1484 aa19.95■□□□□ 0.78
SRGAP3-210ENST00000491467 CEP170Q5SW79 1584 aa19.92■□□□□ 0.78
SRGAP3-210ENST00000491467 NPM1P06748 294 aaKnown RBP eCLIP19.91■□□□□ 0.78
SRGAP3-210ENST00000491467 PBRM1Q86U86 1689 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms